Solver: Mage: read_bin: Put velocity into np table.

src/Model/Geometry/ProfileXYZ.py

@@ -92,6 +92,7 @@ class ProfileXYZ(Profile, SQLSubModel):
         self.station_up_to_date = False
 
         self._get_water_limits_cache = {}
+        self._get_water_limits_ac_cache = {}
 
     @classmethod
     def _db_create(cls, execute, ext=""):
@@ -621,6 +622,7 @@ class ProfileXYZ(Profile, SQLSubModel):
         """
         return [x for x in lst if not np.isnan(x)]
 
+    @timer
     def speed(self, q, z):
         area = self.wet_area(z)
 
@@ -672,6 +674,7 @@ class ProfileXYZ(Profile, SQLSubModel):
             length += line.length
         return length
 
+    @timer
     def compute_wet_area(self, z):
         area = 0.0
         if len(self.tab.L) > 0:
@@ -712,6 +715,7 @@ class ProfileXYZ(Profile, SQLSubModel):
                 if len(line.coords) > 2:
                     poly = geometry.Polygon(line)
                     area += poly.area
+
         return area
 
     def wet_radius(self, z):
@@ -734,6 +738,7 @@ class ProfileXYZ(Profile, SQLSubModel):
         line = geometry.LineString(list(zip(station, zz)))
         return line
 
+    @timer
     def wet_lines(self, z):
         points = self._points
         if len(points) < 3:
@@ -810,7 +815,6 @@ class ProfileXYZ(Profile, SQLSubModel):
         return points
 
     def get_nb_wet_areas(self, z):
-
         n_zones = 0
         points = self._points
         if points[0].z <= z:
@@ -822,10 +826,13 @@ class ProfileXYZ(Profile, SQLSubModel):
 
         return n_zones
 
+    @timer
     def get_all_water_limits_ac(self, z):
         """
         Determine all water limits for z elevation.
         """
+        if z in self._get_water_limits_ac_cache:
+            return self._get_water_limits_ac_cache[z]
 
         points = self._points
         if len(points) < 3:
@@ -858,10 +865,19 @@ class ProfileXYZ(Profile, SQLSubModel):
             logger.error(f"ERROR in get_all_water_limits_ac")
             return [], []
 
-        return start, list(reversed(end))
+        res = start, list(reversed(end))
+        self._get_water_limits_ac_cache[z] = res
+
+        return res
 
     @timer
     def get_water_limits(self, z):
+        if z in self._get_water_limits_cache:
+            return self._get_water_limits_cache[z]
+
+        return self.get_water_limits_compute(z)
+
+    def get_water_limits_compute(self, z):
         """
         Determine left and right limits of water elevation.
         """
@@ -870,9 +886,6 @@ class ProfileXYZ(Profile, SQLSubModel):
         i_left = -1
         i_right = -1
 
-        if z in self._get_water_limits_cache:
-            return self._get_water_limits_cache[z]
-
         for i in range(self.number_points):
             if self.point(i).z <= z:
                 i_left = i
@@ -919,15 +932,20 @@ class ProfileXYZ(Profile, SQLSubModel):
         # Create a generator to improve results data reading speed
         yield pt_left, pt_right
 
+    @timer
     def compute_tabulation(self):
         sorted_points = sorted(self._points, key=lambda p: p.z)
+
         self.tab.z = np.array([p.z for p in sorted_points], np.float64)
         self.tab.L = np.zeros(len(self.tab.z), np.float64)
         self.tab.A = np.zeros(len(self.tab.z), np.float64)
+
         for i in range(1, len(self.tab.z)):
             self.tab.L[i] = self.compute_wet_width(self.tab.z[i])
+
             dx = (self.tab.L[i] + self.tab.L[i-1])/2
             dz = self.tab.z[i] - self.tab.z[i-1]
+
             self.tab.A[i] = self.tab.A[i-1] + dz * dx
 
         self.tab_up_to_date = True

src/Model/Results/River/River.py

@@ -79,7 +79,8 @@ class Profile(SQLSubModel):
 
                 # If is a generator, compute value(s)
                 if isinstance(v, types.GeneratorType):
-                    v = self._data[timestamp][key] = next(v)
+                    v = next(v)
+                    self._data[timestamp][key] = v
 
                 return v
 

src/Solver/Mage.py

@@ -1083,7 +1083,7 @@ class Mage8(Mage):
             newline()
 
             reachs = []
-            iprofiles = {}
+            iprofiles = []
             profile_len = []
             reach_offset = {}
 
@@ -1099,14 +1099,14 @@ class Mage8(Mage):
                 i2 = data[2*i+1] - 1
 
                 # Add profile id correspondance to reach
-                key = (i1, i2)
+                for key in range(i1, i2 + 1):
-                iprofiles[key] = r
+                    iprofiles.append(i)
 
                 # Profile ID offset
                 reach_offset[r] = i1
                 profile_len.append(i2-i1+1)
 
-            logger.debug(f"read_bin: iprofiles = {iprofiles}")
+            logger.debug(f"read_bin: iprofiles = {len(iprofiles)}")
 
             endline()
 
@@ -1124,16 +1124,6 @@ class Mage8(Mage):
             # Data
             newline()
 
-            def ip_to_r(i): return iprofiles[
-                next(
-                    filter(
-                        lambda k: k[0] <= i <= k[1],
-                        iprofiles
-                    )
-                )
-            ]
-            def ip_to_ri(r, i): return i - reach_offset[r]
-
             # check results and geometry consistency
             for i, r in enumerate(reachs):
                 lp = len(r.profiles)
@@ -1144,6 +1134,8 @@ class Mage8(Mage):
                     return
 
             ts = set()
+            tmp_table = {}
+
             end = False
             while not end:
                 n = read_int(1)[0]
@@ -1152,15 +1144,18 @@ class Mage8(Mage):
                     f, dtype=np.byte, count=1)).decode()
                 data = read_float(n)
 
-                # logger.debug(f"read_bin: timestamp = {timestamp} sec")
+                if key not in tmp_table:
+                    tmp_table[key] = []
+
+                tmp_table[key].append(data)
                 ts.add(timestamp)
 
                 if key in ["Z", "Q"]:
                     for i, d in enumerate(data):
                         # Get reach corresponding to profile ID
-                        reach = ip_to_r(i)
+                        reach = reachs[iprofiles[i]]
                         # Get profile id in reach
-                        ri = ip_to_ri(reach, i)
+                        ri = i - reach_offset[reach]
 
                         # Set data for profile RI
                         reach.set(ri, timestamp, key, d)
@@ -1176,6 +1171,10 @@ class Mage8(Mage):
                 endline()
                 end = newline().size <= 0
 
+            table = {}
+            for k in tmp_table:
+                table[k] = np.array(tmp_table[k])
+
             results.set("timestamps", ts)
             ts_list = sorted(ts)
             logger.info(f"compute tab...")
@@ -1185,14 +1184,22 @@ class Mage8(Mage):
 
             logger.info(f"compute velocity...")
 
-            for r in reachs:
+            velocity_arr = np.zeros((len(ts), len(iprofiles)))
-                for t in ts_list:
+            for ti, t in enumerate(ts_list):
-                    for i, p in enumerate(r.profiles):
+                j = 0
+                for r in reachs:
+                    for pi, p in enumerate(r.profiles):
                         v = p.geometry.speed(
                                 p.get_ts_key(t, "Q"),
                                 p.get_ts_key(t, "Z")
                         )
-                        r.set(i, t, "V", v)
+                        r.set(pi, t, "V", v)
+                        velocity_arr[ti, j] = v
+                        j += 1
+
+            table["V"] = velocity_arr
+            results.set("table", table)
+
             logger.info(f"read_bin: ... end with {len(ts)} timestamp read")
 
         results.bufferize("Z")
@@ -1322,6 +1329,7 @@ class Mage8(Mage):
                     newline()
                     npts = read_int(n)
                     endline()
+
                 sum_npts = sum(npts)
                 logger.debug(f"read_gra: Number of points: {sum_npts}")