Manifest: Minor change.

.gitignore

@@ -9,8 +9,6 @@
 *.class
 
 tmp
-mage8
-adists
 
 *.tar
 *.tar.*

.gitlab-ci.yml

@@ -29,7 +29,8 @@ stages:
 #############
 
 variables:
-  MAGE_8_VERSION: "v8.3.5"
+  MAGE_8_VERSION: "v8.3.6"
+  CUSTOM_PYTHON_VERSION: "3.10.14-build2"
 
 dl-mage8-doc:
   stage: downloads
@@ -83,6 +84,21 @@ dl-mage8-windows:
       - mage8-windows/mailleurTT.exe
       - mage8-windows/libbief.dll
 
+dl-python-linux:
+  stage: downloads
+  tags:
+    - linux
+  rules:
+    - if: $CI_COMMIT_BRANCH == 'setup.py' || $CI_COMMIT_TAG
+  script:
+    - curl -L -o python.tar.xz https://gitlab.irstea.fr/parouby/custom-python-build/-/releases/$CUSTOM_PYTHON_VERSION/downloads/python.tar.xz
+    - mkdir -p linux-python/
+    - cd linux-python
+    - tar xvf ../python.tar.xz
+  artifacts:
+    paths:
+      - linux-python
+
 #############
 # CONFIGURE #
 #############
@@ -262,6 +278,11 @@ build-linux:
     - cp -v ../mage8-linux/* pamhyr/mage8/
     # Copy Pamhyr
     - cp -r dist/pamhyr/* pamhyr/
+    # Pamhyr script to force x11
+    - echo '#!/usr/bin/env bash' > pamhyr/pamhyr-x11
+    - echo "" >> pamhyr/pamhyr-x11
+    - echo "GDK_BACKEND=x11 ./pamhyr $@" >> pamhyr/pamhyr-x11
+    - chmod +x pamhyr/pamhyr-x11
     # Copy Pamhyr resources
     - mkdir -p pamhyr/_internal/View
     - mkdir -p pamhyr/_internal/View/ui
@@ -333,7 +354,7 @@ build-windows:
     - python -m pip install -U -r ..\requirements.txt
     # Run Pyinstaller
     # - pyinstaller --noconsole -y ..\src\pamhyr.py
-    - pyinstaller --hide-console hide-early -y ..\src\pamhyr.py
+    - pyinstaller -i ../src/View/ui/ressources/icon.ico --hide-console hide-early -y ..\src\pamhyr.py
     # Create directory
     - mkdir pamhyr
     - dir
@@ -403,6 +424,41 @@ windows-package-exe:
     - copy ..\packages\pamhyr.nsi pamhyr.nsi
     - .\make-windows-exe.bat
 
+linux-python-with-sources:
+  stage: package
+  tags:
+    - release
+    - linux
+  needs:
+    - job: dl-python-linux
+      artifacts: true
+    - job: set-version
+      artifacts: true
+    - job: build-lang
+      artifacts: true
+  rules:
+    - if: $CI_COMMIT_BRANCH == 'setup.py' || $CI_COMMIT_TAG
+  artifacts:
+    paths:
+      - linux-sources-with-python.tar.xz
+  script:
+    - git archive --format=tar.gz --output=src.tar.gz origin/$CI_COMMIT_BRANCH
+    - cd linux-python
+    - mkdir -p pamhyr
+    - cd pamhyr
+    - tar xvf ../../src.tar.gz
+    - cp -v ../../VERSION ./
+    - cp -v ../../src/lang/*.qm ./src/lang/
+    - cd ..
+    - cp ../packages/setup.sh ./setup.sh
+    - sed -i 's|python3|$(dirname $0)/python/python|' setup.sh
+    - sed -i 's|.pamhyr-env|$(dirname $0)/.pamhyr-env|' setup.sh
+    - sed -i 's|./pamhyr|$(dirname $0)/pamhyr|' setup.sh
+    - cd ..
+    - mv linux-python pamhyr
+    - tar cf linux-sources-with-python.tar.xz pamhyr
+    - mv pamhyr linux-python # Keep 'pamhyr' path avalaible
+
 ########
 # HASH #
 ########

.idea/.gitignore

@@ -1,3 +0,0 @@
-# Default ignored files
-/shelf/
-/workspace.xml

.idea/inspectionProfiles/profiles_settings.xml

@@ -1,6 +0,0 @@
-<component name="InspectionProjectProfileManager">
-  <settings>
-    <option name="USE_PROJECT_PROFILE" value="false" />
-    <version value="1.0" />
-  </settings>
-</component>

.idea/misc.xml

@@ -1,7 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<project version="4">
-  <component name="Black">
-    <option name="sdkName" value="Python 3.10 (pamhyr)" />
-  </component>
-  <component name="ProjectRootManager" version="2" project-jdk-name="Python 3.10 (pamhyr)" project-jdk-type="Python SDK" />
-</project>

.idea/modules.xml

@@ -1,8 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<project version="4">
-  <component name="ProjectModuleManager">
-    <modules>
-      <module fileurl="file://$PROJECT_DIR$/.idea/pamhyr.iml" filepath="$PROJECT_DIR$/.idea/pamhyr.iml" />
-    </modules>
-  </component>
-</project>

.idea/pamhyr.iml

@@ -1,14 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<module type="PYTHON_MODULE" version="4">
-  <component name="NewModuleRootManager">
-    <content url="file://$MODULE_DIR$">
-      <excludeFolder url="file://$MODULE_DIR$/venv" />
-    </content>
-    <orderEntry type="jdk" jdkName="Python 3.10 (pamhyr)" jdkType="Python SDK" />
-    <orderEntry type="sourceFolder" forTests="false" />
-  </component>
-  <component name="PyDocumentationSettings">
-    <option name="format" value="PLAIN" />
-    <option name="myDocStringFormat" value="Plain" />
-  </component>
-</module>

.idea/vcs.xml

@@ -1,6 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<project version="4">
-  <component name="VcsDirectoryMappings">
-    <mapping directory="" vcs="Git" />
-  </component>
-</project>

guix.sh

@@ -0,0 +1,3 @@
+#!/usr/bin/env bash
+
+guix shell --manifest=manifest.scm -- python3 ./src/pamhyr.py $@

manifest.scm

@@ -0,0 +1,22 @@
+;; manifest.scm -- Pamhyr
+;; Copyright (C) 2024  INRAE
+;;
+;; This program is free software: you can redistribute it and/or modify
+;; it under the terms of the GNU General Public License as published by
+;; the Free Software Foundation, either version 3 of the License, or
+;; (at your option) any later version.
+;;
+;; This program is distributed in the hope that it will be useful,
+;; but WITHOUT ANY WARRANTY; without even the implied warranty of
+;; MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+;; GNU General Public License for more details.
+;;
+;; You should have received a copy of the GNU General Public License
+;; along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+(specifications->manifest
+ (list "python" "zlib" "python-platformdirs" "python-lxml"
+       "python-pyqt@5" "python-pyqt5-sip"
+       "python-pyqtgraph" "python-qscintilla"
+       "python-numpy" "python-shapely" "python-pyshp"
+       "python-matplotlib"))

packages/pamhyr.nsi

@@ -3,6 +3,7 @@
 !define LIC_NAME "LICENSE"
 !define APP_NAME "PAMHYR"
 
+Icon "pamhyr\_internal\View\ui\ressources\icon.ico"
 Name "Pamhyr2"
 OutFile "pamhyr-windows.exe"
 LicenseData "pamhyr\_internal\LICENSE"

packages/setup.sh

@@ -0,0 +1,54 @@
+#! /usr/bin/env bash
+# setup.sh -- Pamhyr
+# Copyright (C) 2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+function perr() {
+    >&2 echo $1
+}
+
+function try() {
+    echo "$1"
+    res=$($1)
+    if [ $? -ne 0 ];
+    then
+        perr " !!! Command failed with exit value $?: '$1'"
+        perr " - $res"
+        exit 2
+    fi
+}
+
+if [ $# -ne 0 ];
+then
+    perr "usage: $0"
+    exit 1
+fi
+
+OLD_PWD=$PWD
+
+try "python3 -m venv .pamhyr-env"
+try "source .pamhyr-env/bin/activate"
+try "python3 -m pip install -r ./pamhyr/requirements.txt"
+
+echo '#! /usr/bin/env bash' > run-pamhyr
+echo 'source .pamhyr-env/bin/activate' >> run-pamhyr
+echo 'if [ $XDG_SESSION_TYPE == wayland ]; then' >> run-pamhyr
+echo '  export QT_QPA_PLATFORM=wayland' >> run-pamhyr
+echo 'fi' >> run-pamhyr
+echo 'python3 ./pamhyr/src/pamhyr.py $@' >> run-pamhyr
+
+try "chmod +x run-pamhyr"
+
+cd $OLD_PWD

setup.py

@@ -0,0 +1,30 @@
+#!/usr/bin/env python3
+
+import os
+
+from setuptools import find_packages, setup
+
+def read_requirements():
+    req = []
+
+    with open("requirements.txt", "r") as f:
+        for line in f:
+            if line[0] == "#":
+                continue
+
+            req.append(line)
+
+    return req
+
+setup(
+    name="Pamhyr2",
+    version="0.0.8",
+    description='River 1D modelling interface',
+    maintainer='INRAE',
+    maintainer_email='pierre-antoine.rouby@inrae.fr',
+    url='https://gitlab.irstea.fr/theophile.terraz/pamhyr',
+    packages=find_packages("."),
+    package_dir={"Pamhyr2": "Pamhyr2"},
+    scripts=[os.path.join("src", "pamhyr.py")],
+    install_requires=read_requirements(),
+)

src/Checker/Adists.py

@@ -1,51 +0,0 @@
-# Adists.py -- Pamhyr study checkers
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-import time
-import logging
-from functools import reduce
-
-from PyQt5.QtCore import QCoreApplication
-
-from Modules import Modules
-from Checker.Checker import AbstractModelChecker, STATUS
-
-_translate = QCoreApplication.translate
-
-logger = logging.getLogger()
-
-class AdistsOutputKpChecker(AbstractModelChecker):
-    def __init__(self):
-        super(AdistsOutputKpChecker, self).__init__()
-
-        self._name = _translate("Checker", "AdisTS output Kp checker")
-        self._description = _translate(
-            "Checker", "Check output Kp"
-        )
-        self._modules = Modules.OUTPUT_KP
-
-    def run(self, study):
-        ok = True
-        nerror = 0
-        self._summary = "ok"
-        self._status = STATUS.OK
-
-        if not self.basic_check(study):
-            return False
-
-        return ok

src/Checker/Mage.py

@@ -206,11 +206,11 @@ class MageGeometryGuideLineChecker(StudyGeometryChecker):
     def __init__(self, version="mage8"):
         super(MageGeometryGuideLineChecker, self).__init__()
 
-        self._name = _translate("Checker", "Mage geometry guide line checker")
+        self._name = _translate("Checker", "Mage geometry guideline checker")
         self._description = _translate(
             "Checker",
-            "Check if exists geometry guide line is correctly defined \
-for each reaches of the study"
+            "Check if exists geometry guidelines are correctly defined \
+for each reach"
         )
         self._solver = version
         self._modules = Modules.GEOMETRY
@@ -241,7 +241,7 @@ for each reaches of the study"
             for profile in profiles:
                 if not profile.has_standard_named_points():
                     self._status = STATUS.WARNING
-                    self._summary = "no_standard_guileline_defined"
+                    self._summary = "no_standard_guideline_defined"
                     return False
 
         for gl in gls[1:]:

src/Checker/Study.py

@@ -34,9 +34,9 @@ class StudyNetworkReachChecker(AbstractModelChecker):
     def __init__(self):
         super(StudyNetworkReachChecker, self).__init__()
 
-        self._name = _translate("Checker", "Study network reach checker")
+        self._name = _translate("Checker", "Study reach network checker")
         self._description = _translate(
-            "Checker", "Check if exists at least one reach for study"
+            "Checker", "Check if exists at least one reach exists"
         )
         self._modules = Modules.NETWORK
 
@@ -63,7 +63,7 @@ class StudyGeometryChecker(AbstractModelChecker):
 
         self._name = _translate("Checker", "Study geometry checker")
         self._description = _translate(
-            "Checker", "Check if exists geometry for each reach of study"
+            "Checker", "Check if the geometry of each reach exists"
         )
         self._modules = Modules.GEOMETRY
 

src/Checker/__init__.py

@@ -1,4 +1,4 @@
-# translate.py -- Pamhyr
+# __init__.py -- Pamhyr
 # Copyright (C) 2023-2024  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
@@ -15,24 +15,3 @@
 # along with this program.  If not, see <https://www.gnu.org/licenses/>.
 
 # -*- coding: utf-8 -*-
-
-from PyQt5.QtCore import QCoreApplication
-
-from View.Translate import MainTranslate
-
-_translate = QCoreApplication.translate
-
-
-class PollutantsTranslate(MainTranslate):
-    def __init__(self):
-        super(PollutantsTranslate, self).__init__()
-
-        self._dict["Pollutants"] = _translate(
-            "Pollutants", "Pollutants"
-        )
-
-        self._dict["x"] = _translate("Pollutants", "X (m)")
-
-        self._sub_dict["table_headers"] = {
-            "name": self._dict["name"],
-        }

src/Model/AdditionalFile/__init__.py

@@ -1,4 +1,4 @@
-# translate.py -- Pamhyr
+# __init__.py -- Pamhyr
 # Copyright (C) 2023-2024  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
@@ -15,22 +15,3 @@
 # along with this program.  If not, see <https://www.gnu.org/licenses/>.
 
 # -*- coding: utf-8 -*-
-
-from PyQt5.QtCore import QCoreApplication
-
-from View.Translate import MainTranslate
-
-_translate = QCoreApplication.translate
-
-class BCAdisTSTranslate(MainTranslate):
-    def __init__(self):
-        super(BCAdisTSTranslate, self).__init__()
-
-        self._dict["Boundary conditions AdisTS"] = _translate(
-            "BoundaryConditionsAdisTS", "Boundary conditions AdisTS"
-        )
-
-        self._sub_dict["table_headers"] = {
-            "type": self._dict["type"],
-            "node": _translate("BoundaryCondition", "Node")
-        }

src/Model/BoundaryCondition/__init__.py

@@ -1,4 +1,4 @@
-# translate.py -- Pamhyr
+# __init__.py -- Pamhyr
 # Copyright (C) 2023-2024  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
@@ -15,26 +15,3 @@
 # along with this program.  If not, see <https://www.gnu.org/licenses/>.
 
 # -*- coding: utf-8 -*-
-
-from PyQt5.QtCore import QCoreApplication
-
-from View.Translate import MainTranslate
-
-_translate = QCoreApplication.translate
-
-
-class OutputKpAdisTSTranslate(MainTranslate):
-    def __init__(self):
-        super(OutputKpAdisTSTranslate, self).__init__()
-
-        self._dict["Output Kp"] = _translate(
-            "OutputKpAdisTS", "Output Kp"
-        )
-
-        self._dict["x"] = _translate("OutputKpAdisTS", "X (m)")
-
-        self._sub_dict["table_headers"] = {
-            "title": self._dict["title"],
-            "reach": self._dict["reach"],
-            "kp": self._dict["unit_kp"],
-        }

src/Model/BoundaryConditionsAdisTS/BoundaryConditionAdisTS.py

@@ -1,221 +0,0 @@
-# BoundaryConditionsAdisTS.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-import logging
-
-from tools import (
-    trace, timer,
-    old_pamhyr_date_to_timestamp,
-    date_iso_to_timestamp,
-    date_dmy_to_timestamp,
-)
-
-from Model.Tools.PamhyrDB import SQLSubModel
-from Model.Except import NotImplementedMethodeError
-
-logger = logging.getLogger()
-
-
-class BoundaryConditionAdisTS(SQLSubModel):
-    _sub_classes = []
-    _id_cnt = 0
-
-    def __init__(self, id: int = -1,
-                 pollutant: int = -1, status=None):
-        super(BoundaryConditionAdisTS, self).__init__()
-
-        self._status = status
-
-        if id == -1:
-            self.id = BoundaryConditionAdisTS._id_cnt
-        else:
-            self.id = id
-
-        self._type = ""
-        self._node = None
-        self._pollutant = pollutant
-        self._data = []
-        self._header = []
-        self._types = [self.time_convert, float]
-
-        BoundaryConditionAdisTS._id_cnt = max(BoundaryConditionAdisTS._id_cnt + 1, self.id)
-
-    @classmethod
-    def _db_create(cls, execute):
-        execute("""
-          CREATE TABLE boundary_condition_adists(
-            id INTEGER NOT NULL PRIMARY KEY,
-            pollutant INTEGER NOT NULL,
-            type TEXT NOT NULL,
-            node INTEGER,
-            FOREIGN KEY(pollutant) REFERENCES Pollutants(id),
-            FOREIGN KEY(node) REFERENCES river_node(id)
-          )
-        """)
-
-        execute("""
-          CREATE TABLE boundary_condition_data_adists(
-            id INTEGER NOT NULL PRIMARY KEY AUTOINCREMENT,
-            data0 TEXT NOT NULL,
-            data1 TEXT NOT NULL,
-            bc INTEGER,
-            FOREIGN KEY(bc) REFERENCES boundary_condition_adists(id)
-          )
-        """)
-
-        return cls._create_submodel(execute)
-
-    @classmethod
-    def _db_update(cls, execute, version):
-        return True
-
-    @classmethod
-    def _db_load(cls, execute, data=None):
-        new = []
-
-        table = execute(
-            "SELECT id, pollutant, type, node " +
-            "FROM boundary_condition_adists"
-        )
-
-        if table is not None:
-            for row in table:
-                bc = cls(
-                    id=row[0],
-                    pollutant=row[1],
-                    status=data['status']
-                )
-
-                bc.type = row[2]
-
-                bc.node = None
-                if row[3] != -1:
-                    bc.node = next(filter(lambda n: n.id == row[3], data["nodes"])).id
-
-                values = execute(
-                    "SELECT data0, data1 FROM boundary_condition_data_adists " +
-                    f"WHERE bc = '{bc.id}'"
-                )
-
-                # Write data
-                for v in values:
-                    data0 = bc._types[0](v[0])
-                    data1 = bc._types[1](v[1])
-                    # Replace data at pos ind
-                    bc._data.append((data0, data1))
-
-                new.append(bc)
-
-        return new
-
-    def _db_save(self, execute, data=None):
-
-        execute(f"DELETE FROM boundary_condition_adists WHERE id = {self.id}")
-        execute(f"DELETE FROM boundary_condition_data_adists WHERE bc = {self.id}")
-
-        node = -1
-        if self._node is not None:
-            node = self._node
-
-        sql = (
-            "INSERT INTO " +
-            "boundary_condition_adists(id, pollutant, type, node) " +
-            "VALUES (" +
-            f"{self.id}, {self._pollutant}, " +
-            f"'{self._db_format(self._type)}', {node}" +
-            ")"
-        )
-        execute(sql)
-
-        for d in self._data:
-            data0 = self._db_format(str(d[0]))
-            data1 = self._db_format(str(d[1]))
-
-            sql = (
-                "INSERT INTO " +
-                "boundary_condition_data_adists(data0, data1, bc) " +
-                f"VALUES ('{data0}', {data1}, {self.id})"
-            )
-            execute(sql)
-
-        return True
-
-    def __len__(self):
-        return len(self._data)
-
-    @classmethod
-    def time_convert(cls, data):
-        if type(data) is str:
-            if data.count("-") == 2:
-                return date_iso_to_timestamp(data)
-            if data.count("/") == 2:
-                return date_dmy_to_timestamp(data)
-            if data.count(":") == 3:
-                return old_pamhyr_date_to_timestamp(data)
-            if data.count(":") == 2:
-                return old_pamhyr_date_to_timestamp("00:" + data)
-            if data.count(".") == 1:
-                return round(float(data))
-
-        return int(data)
-
-    @property
-    def node(self):
-        return self._node
-
-    @node.setter
-    def node(self, node):
-        self._node = node
-        self._status.modified()
-
-    @property
-    def header(self):
-        return self._header.copy()
-
-    @header.setter
-    def header(self, header):
-        self._header = header
-        self._status.modified()
-
-    @property
-    def pollutant(self):
-        return self._pollutant
-
-    @property
-    def type(self):
-        return self._type
-
-    @type.setter
-    def type(self, type):
-        self._type = type
-        self._status.modified()
-
-    @property
-    def data(self):
-        return self._data.copy()
-
-
-
-
-
-
-
-
-
-
-

src/Model/BoundaryConditionsAdisTS/BoundaryConditionsAdisTSList.py

@@ -1,68 +0,0 @@
-# BoundaryConditionsAdisTSList.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-from copy import copy
-from tools import trace, timer
-
-from Model.Tools.PamhyrList import PamhyrModelList
-from Model.Except import NotImplementedMethodeError
-
-from Model.BoundaryConditionsAdisTS.BoundaryConditionAdisTS import BoundaryConditionAdisTS
-
-class BoundaryConditionsAdisTSList(PamhyrModelList):
-    _sub_classes = [
-        BoundaryConditionAdisTS,
-    ]
-
-    @classmethod
-    def _db_load(cls, execute, data=None):
-        new = cls(status=data['status'])
-
-        if data is None:
-            data = {}
-
-        new._lst = BoundaryConditionAdisTS._db_load(
-            execute, data
-        )
-
-        return new
-
-    def _db_save(self, execute, data=None):
-        execute("DELETE FROM boundary_condition_adists")
-        execute("DELETE FROM boundary_condition_data_adists")
-
-        if data is None:
-            data = {}
-
-        for bc in self._lst:
-            bc._db_save(execute, data=data)
-
-        return True
-
-    def new(self, index, pollutant):
-        n = BoundaryConditionAdisTS(pollutant=pollutant, status=self._status)
-        self._lst.insert(index, n)
-        self._status.modified()
-        return n
-
-    @property
-    def BCs_AdisTS_List(self):
-        return self.lst
-
-
-

src/Model/D90AdisTS/D90AdisTS.py

@@ -1,201 +0,0 @@
-# D90AdisTS.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-import logging
-from functools import reduce
-
-from tools import trace, timer, old_pamhyr_date_to_timestamp
-
-from Model.Tools.PamhyrDB import SQLSubModel
-from Model.Except import NotImplementedMethodeError
-
-from Model.D90AdisTS.D90AdisTSSpec import D90AdisTSSpec
-
-logger = logging.getLogger()
-
-class D90AdisTS(SQLSubModel):
-    _sub_classes = [
-        D90AdisTSSpec,
-    ]
-    _id_cnt = 0
-
-    def __init__(self, id: int = -1, name: str = "default",
-                 status=None):
-        super(D90AdisTS, self).__init__()
-
-        self._status = status
-
-        if id == -1:
-            self.id = D90AdisTS._id_cnt
-        else:
-            self.id = id
-
-        self._name = name
-        self._d90 = None
-        self._enabled = True
-        self._data = []
-
-        D90AdisTS._id_cnt = max(
-            D90AdisTS._id_cnt + 1,
-            self.id
-        )
-
-    @classmethod
-    def _db_create(cls, execute):
-        execute("""
-                  CREATE TABLE d90_adists(
-                    id INTEGER NOT NULL PRIMARY KEY,
-                    name TEXT NOT NULL,
-                    d90 REAL NOT NULL,
-                    enabled BOOLEAN NOT NULL
-                  )
-                """)
-
-        return cls._create_submodel(execute)
-
-    @classmethod
-    def _db_update(cls, execute, version):
-        major, minor, release = version.strip().split(".")
-        if major == minor == "0":
-            if int(release) < 6:
-                cls._db_create(execute)
-
-        return True
-
-    @classmethod
-    def _db_load(cls, execute, data=None):
-        new = []
-
-        table = execute(
-            "SELECT id, name, d90, enabled " +
-            "FROM d90_adists"
-        )
-
-        if table is not None:
-            for row in table:
-                d90_id = row[0]
-                name = row[1]
-                d90 = row[2]
-                enabled = (row[3] == 1)
-
-                D90 = cls(
-                    id=d90_id,
-                    name=name,
-                    status=data['status']
-                )
-
-                D90.d90 = d90
-                D90.enabled = enabled
-
-                data['d90_default_id'] = d90_id
-                D90._data = D90AdisTSSpec._db_load(execute, data)
-
-                new.append(D90)
-
-        return new
-
-    def _db_save(self, execute, data=None):
-        execute(f"DELETE FROM d90_adists WHERE id = {self.id}")
-
-        d90 = -1.
-        if self.d90 is not None:
-            d90 = self.d90
-
-        sql = (
-            "INSERT INTO " +
-            "d90_adists(" +
-            "id, name, d90, enabled" +
-            ") " +
-            "VALUES (" +
-            f"{self.id}, '{self._db_format(self._name)}', " +
-            f"{d90}, {self._enabled}" +
-            ")"
-        )
-
-        execute(sql)
-
-        data['d90_default_id'] = self.id
-        execute(
-            "DELETE FROM d90_spec " +
-            f"WHERE d90_default = {self.id}"
-        )
-
-        for d90_spec in self._data:
-            d90_spec._db_save(execute, data)
-
-        return True
-
-    def __len__(self):
-        return len(self._data)
-
-    @property
-    def name(self):
-        return self._name
-
-    @name.setter
-    def name(self, name):
-        self._name = name
-        self._status.modified()
-
-    @property
-    def d90(self):
-        return self._d90
-
-    @d90.setter
-    def d90(self, d90):
-        self._d90 = d90
-        self._status.modified()
-
-    @property
-    def enabled(self):
-        return self._enabled
-
-    @enabled.setter
-    def enabled(self, enabled):
-        self._enabled = enabled
-        self._status.modified()
-
-    def new(self, index):
-        n = D90AdisTSSpec(status=self._status)
-        self._data.insert(index, n)
-        self._status.modified()
-        return n
-
-    def delete(self, data):
-        self._data = list(
-            filter(
-                lambda x: x not in data,
-                self._data
-            )
-        )
-        self._status.modified()
-
-    def delete_i(self, indexes):
-        for ind in indexes:
-            del self._data[ind]
-        self._status.modified()
-
-    def insert(self, index, data):
-        self._data.insert(index, data)
-        self._status.modified()
-
-
-
-
-
-

src/Model/D90AdisTS/D90AdisTSList.py

@@ -1,66 +0,0 @@
-# D90AdisTSList.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-from copy import copy
-from tools import trace, timer
-
-from Model.Tools.PamhyrList import PamhyrModelList
-from Model.D90AdisTS.D90AdisTS import D90AdisTS
-
-class D90AdisTSList(PamhyrModelList):
-    _sub_classes = [
-        D90AdisTS,
-    ]
-
-    @classmethod
-    def _db_load(cls, execute, data=None):
-        new = cls(status=data['status'])
-
-        if data is None:
-            data = {}
-
-        new._lst = D90AdisTS._db_load(
-            execute, data
-        )
-
-        return new
-
-    def _db_save(self, execute, data=None):
-        execute("DELETE FROM d90_adists")
-
-        if data is None:
-            data = {}
-
-        for d90 in self._lst:
-            d90._db_save(execute, data=data)
-
-        return True
-
-    def new(self, index):
-        n = D90AdisTS(status=self._status)
-        self._lst.insert(index, n)
-        self._status.modified()
-        return n
-
-    @property
-    def D90_AdisTS_List(self):
-        return self.lst
-
-
-
-

src/Model/D90AdisTS/D90AdisTSSpec.py

@@ -1,200 +0,0 @@
-# D90AdisTSSpec.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-import logging
-
-from tools import trace, timer
-
-from Model.Tools.PamhyrDB import SQLSubModel
-from Model.Except import NotImplementedMethodeError
-
-logger = logging.getLogger()
-
-class D90AdisTSSpec(SQLSubModel):
-    _sub_classes = [
-    ]
-    _id_cnt = 0
-
-    def __init__(self, id: int = -1, name: str = "",
-                 status=None):
-        super(D90AdisTSSpec, self).__init__()
-
-        self._status = status
-
-        if id == -1:
-            self.id = D90AdisTSSpec._id_cnt
-        else:
-            self.id = id
-
-        self._name_section = name
-        self._reach = None
-        self._start_kp = None
-        self._end_kp = None
-        self._d90 = None
-        self._enabled = True
-
-        D90AdisTSSpec._id_cnt = max(D90AdisTSSpec._id_cnt + 1, self.id)
-
-    @classmethod
-    def _db_create(cls, execute):
-        execute("""
-              CREATE TABLE d90_spec(
-                id INTEGER NOT NULL PRIMARY KEY,
-                d90_default INTEGER NOT NULL,
-                name TEXT NOT NULL,
-                reach INTEGER NOT NULL,
-                start_kp REAL NOT NULL,
-                end_kp REAL NOT NULL,
-                d90 REAL NOT NULL,
-                enabled BOOLEAN NOT NULL,
-                FOREIGN KEY(d90_default) REFERENCES d90_adists(id),
-                FOREIGN KEY(reach) REFERENCES river_reach(id)
-              )
-            """)
-
-        return cls._create_submodel(execute)
-
-    @classmethod
-    def _db_update(cls, execute, version):
-        major, minor, release = version.strip().split(".")
-        if major == minor == "0":
-            if int(release) < 6:
-                cls._db_create(execute)
-
-        return True
-
-    @classmethod
-    def _db_load(cls, execute, data=None):
-        new = []
-
-        table = execute(
-            "SELECT id, d90_default, name, reach, start_kp, end_kp, " +
-            "d90, enabled " +
-            "FROM d90_spec " +
-            f"WHERE d90_default = {data['d90_default_id']} "
-        )
-
-        for row in table:
-            id            = row[0]
-            name          = row[2]
-            reach         = row[3]
-            start_kp      = row[4]
-            end_kp        = row[5]
-            d90 = row[6]
-            enabled       = (row[7] == 1)
-
-            new_spec = cls(
-                id=id,
-                name=name,
-                status=data['status']
-            )
-
-            new_spec.reach = reach
-            new_spec.start_kp = start_kp
-            new_spec.end_kp = end_kp
-            new_spec.d90 = d90
-            new_spec.enabled = enabled
-
-            new.append(new_spec)
-
-        return new
-
-    def _db_save(self, execute, data=None):
-        d90_default = data['d90_default_id']
-
-        sql = (
-            "INSERT INTO " +
-            "d90_spec(id, d90_default, name, reach, " +
-            "start_kp, end_kp, d90, enabled) " +
-            "VALUES (" +
-            f"{self.id}, " +
-            f"{d90_default}, " +
-            f"'{self._db_format(self._name_section)}', " +
-            f"{self._reach}, " +
-            f"{self._start_kp}, " +
-            f"{self._end_kp}, " +
-            f"{self._d90}, " +
-            f"{self._enabled}" +
-            ")"
-        )
-        execute(sql)
-
-        return True
-
-    @property
-    def name(self):
-        return self._name_section
-
-    @name.setter
-    def name(self, name):
-        self._name_section = name
-        self._status.modified()
-
-    @property
-    def reach(self):
-        return self._reach
-
-    @reach.setter
-    def reach(self, reach):
-        self._reach = reach
-        self._status.modified()
-
-    @property
-    def start_kp(self):
-        return self._start_kp
-
-    @start_kp.setter
-    def start_kp(self, start_kp):
-        self._start_kp = start_kp
-        self._status.modified()
-
-    @property
-    def end_kp(self):
-        return self._end_kp
-
-    @end_kp.setter
-    def end_kp(self, end_kp):
-        self._end_kp = end_kp
-        self._status.modified()
-
-    @property
-    def d90(self):
-        return self._d90
-
-    @d90.setter
-    def d90(self, d90):
-        self._d90 = d90
-        self._status.modified()
-
-    @property
-    def enabled(self):
-        return self._enabled
-
-    @enabled.setter
-    def enabled(self, enabled):
-        self._enabled = enabled
-        self._status.modified()
-
-
-
-
-
-
-
-
-

src/Model/DIFAdisTS/DIFAdisTS.py

@@ -1,258 +0,0 @@
-# DIFAdisTS.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-import logging
-from functools import reduce
-
-from tools import trace, timer, old_pamhyr_date_to_timestamp
-
-from Model.Tools.PamhyrDB import SQLSubModel
-from Model.Except import NotImplementedMethodeError
-
-from Model.DIFAdisTS.DIFAdisTSSpec import DIFAdisTSSpec
-
-logger = logging.getLogger()
-
-class DIFAdisTS(SQLSubModel):
-    _sub_classes = [
-        DIFAdisTSSpec,
-    ]
-    _id_cnt = 0
-
-    def __init__(self, id: int = -1, name: str = "default",
-                 status=None):
-        super(DIFAdisTS, self).__init__()
-
-        self._status = status
-
-        if id == -1:
-            self.id = DIFAdisTS._id_cnt
-        else:
-            self.id = id
-
-        self._name = name
-        self._method = None
-        self._dif = None
-        self._b = None
-        self._c = None
-        self._enabled = True
-        self._types = ["iwasa", "fisher", "elder", "constante", "generique"]
-        self._data = []
-
-        DIFAdisTS._id_cnt = max(
-            DIFAdisTS._id_cnt + 1,
-            self.id
-        )
-
-    @classmethod
-    def _db_create(cls, execute):
-        execute("""
-                  CREATE TABLE dif_adists(
-                    id INTEGER NOT NULL PRIMARY KEY,
-                    name TEXT NOT NULL,
-                    method TEXT NOT NULL,
-                    dif REAL NOT NULL,
-                    b REAL,
-                    c REAL,
-                    enabled BOOLEAN NOT NULL
-                  )
-                """)
-
-        return cls._create_submodel(execute)
-
-    @classmethod
-    def _db_update(cls, execute, version):
-        major, minor, release = version.strip().split(".")
-        if major == minor == "0":
-            if int(release) < 6:
-                cls._db_create(execute)
-
-        return True
-
-    @classmethod
-    def _db_load(cls, execute, data=None):
-        new = []
-
-        table = execute(
-            "SELECT id, name, method, dif, b, c, enabled " +
-            "FROM dif_adists"
-        )
-
-        if table is not None:
-            for row in table:
-                dif_id = row[0]
-                name = row[1]
-                method = row[2]
-                dif = row[3]
-                b = row[4]
-                c = row[5]
-                enabled = (row[6] == 1)
-
-                DIF = cls(
-                    id=dif_id,
-                    name=name,
-                    status=data['status']
-                )
-
-                DIF.method = method
-                DIF.dif = dif
-                DIF.b = b
-                DIF.c = c
-                DIF.enabled = enabled
-
-                data['dif_default_id'] = dif_id
-                DIF._data = DIFAdisTSSpec._db_load(execute, data)
-
-                new.append(DIF)
-
-        return new
-
-    def _db_save(self, execute, data=None):
-        execute(f"DELETE FROM dif_adists WHERE id = {self.id}")
-
-        method = ""
-        if self.method is not None:
-            method = self.method
-
-        dif = -1.
-        if self.dif is not None:
-            dif = self.dif
-
-        b = -1.
-        if self.b is not None:
-            b = self.b
-
-        c = -1.
-        if self.dif is not None:
-            c = self.c
-
-        sql = (
-            "INSERT INTO " +
-            "dif_adists(" +
-            "id, name, method, dif, b, c, enabled" +
-            ") " +
-            "VALUES (" +
-            f"{self.id}, '{self._db_format(self._name)}', " +
-            f"'{self._db_format(self._method)}', " +
-            f"{dif}, {b}, {c}, {self._enabled}" +
-            ")"
-        )
-
-        execute(sql)
-
-        data['dif_default_id'] = self.id
-        execute(
-            "DELETE FROM dif_spec " +
-            f"WHERE dif_default = {self.id}"
-        )
-
-        for dif_spec in self._data:
-            dif_spec._db_save(execute, data)
-
-        return True
-
-    def __len__(self):
-        return len(self._data)
-
-    @property
-    def name(self):
-        return self._name
-
-    @name.setter
-    def name(self, name):
-        self._name = name
-        self._status.modified()
-
-    @property
-    def method(self):
-        return self._method
-
-    @method.setter
-    def method(self, method):
-        self._method = method
-        self._status.modified()
-
-    @property
-    def types(self):
-        return self._types
-
-    @property
-    def dif(self):
-        return self._dif
-
-    @dif.setter
-    def dif(self, dif):
-        self._dif = dif
-        self._status.modified()
-
-    @property
-    def b(self):
-        return self._b
-
-    @b.setter
-    def b(self, b):
-        self._b = b
-        self._status.modified()
-
-    @property
-    def c(self):
-        return self._c
-
-    @c.setter
-    def c(self, c):
-        self._c = c
-        self._status.modified()
-
-    @property
-    def enabled(self):
-        return self._enabled
-
-    @enabled.setter
-    def enabled(self, enabled):
-        self._enabled = enabled
-        self._status.modified()
-
-    def new(self, index):
-        n = DIFAdisTSSpec(status=self._status)
-        self._data.insert(index, n)
-        self._status.modified()
-        return n
-
-    def delete(self, data):
-        self._data = list(
-            filter(
-                lambda x: x not in data,
-                self._data
-            )
-        )
-        self._status.modified()
-
-    def delete_i(self, indexes):
-        for ind in indexes:
-            del self._data[ind]
-        self._status.modified()
-
-    def insert(self, index, data):
-        self._data.insert(index, data)
-        self._status.modified()
-
-
-
-
-
-

src/Model/DIFAdisTS/DIFAdisTSList.py

@@ -1,66 +0,0 @@
-# DIFAdisTSList.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-from copy import copy
-from tools import trace, timer
-
-from Model.Tools.PamhyrList import PamhyrModelList
-from Model.DIFAdisTS.DIFAdisTS import DIFAdisTS
-
-class DIFAdisTSList(PamhyrModelList):
-    _sub_classes = [
-        DIFAdisTS,
-    ]
-
-    @classmethod
-    def _db_load(cls, execute, data=None):
-        new = cls(status=data['status'])
-
-        if data is None:
-            data = {}
-
-        new._lst = DIFAdisTS._db_load(
-            execute, data
-        )
-
-        return new
-
-    def _db_save(self, execute, data=None):
-        execute("DELETE FROM dif_adists")
-
-        if data is None:
-            data = {}
-
-        for dif in self._lst:
-            dif._db_save(execute, data=data)
-
-        return True
-
-    def new(self, index):
-        n = DIFAdisTS(status=self._status)
-        self._lst.insert(index, n)
-        self._status.modified()
-        return n
-
-    @property
-    def DIF_AdisTS_List(self):
-        return self.lst
-
-
-
-

src/Model/DIFAdisTS/DIFAdisTSSpec.py

@@ -1,228 +0,0 @@
-# DIFAdisTSSpec.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-import logging
-
-from tools import trace, timer
-
-from Model.Tools.PamhyrDB import SQLSubModel
-from Model.Except import NotImplementedMethodeError
-
-logger = logging.getLogger()
-
-class DIFAdisTSSpec(SQLSubModel):
-    _sub_classes = [
-    ]
-    _id_cnt = 0
-
-    def __init__(self, id: int = -1, method: str = "",
-                 status=None):
-        super(DIFAdisTSSpec, self).__init__()
-
-        self._status = status
-
-        if id == -1:
-            self.id = DIFAdisTSSpec._id_cnt
-        else:
-            self.id = id
-
-        self._method = method
-        self._reach = None
-        self._start_kp = None
-        self._end_kp = None
-        self._dif = None
-        self._b = None
-        self._c = None
-        self._enabled = True
-
-        DIFAdisTSSpec._id_cnt = max(DIFAdisTSSpec._id_cnt + 1, self.id)
-
-    @classmethod
-    def _db_create(cls, execute):
-        execute("""
-              CREATE TABLE dif_spec(
-                id INTEGER NOT NULL PRIMARY KEY,
-                dif_default INTEGER NOT NULL,
-                method TEXT NOT NULL,
-                reach INTEGER NOT NULL,
-                start_kp REAL NOT NULL,
-                end_kp REAL NOT NULL,
-                dif REAL NOT NULL,
-                b REAL,
-                c REAL,
-                enabled BOOLEAN NOT NULL,
-                FOREIGN KEY(dif_default) REFERENCES dif_adists(id),
-                FOREIGN KEY(reach) REFERENCES river_reach(id)
-              )
-            """)
-
-        return cls._create_submodel(execute)
-
-    @classmethod
-    def _db_update(cls, execute, version):
-        major, minor, release = version.strip().split(".")
-        if major == minor == "0":
-            if int(release) < 6:
-                cls._db_create(execute)
-
-        return True
-
-    @classmethod
-    def _db_load(cls, execute, data=None):
-        new = []
-
-        table = execute(
-            "SELECT id, dif_default, method, reach, start_kp, end_kp, " +
-            "dif, b, c, enabled " +
-            "FROM dif_spec " +
-            f"WHERE dif_default = {data['dif_default_id']} "
-        )
-
-        for row in table:
-            id            = row[0]
-            method          = row[2]
-            reach         = row[3]
-            start_kp      = row[4]
-            end_kp        = row[5]
-            dif = row[6]
-            b = row[7]
-            c = row[8]
-            enabled       = (row[9] == 1)
-
-            new_spec = cls(
-                id=id,
-                method=method,
-                status=data['status']
-            )
-
-            new_spec.reach = reach
-            new_spec.start_kp = start_kp
-            new_spec.end_kp = end_kp
-            new_spec.dif = dif
-            new_spec.b = b
-            new_spec.c = c
-            new_spec.enabled = enabled
-
-            new.append(new_spec)
-
-        return new
-
-    def _db_save(self, execute, data=None):
-        dif_default = data['dif_default_id']
-
-        sql = (
-            "INSERT INTO " +
-            "dif_spec(id, dif_default, method, reach, " +
-            "start_kp, end_kp, dif, b, c, enabled) " +
-            "VALUES (" +
-            f"{self.id}, " +
-            f"{dif_default}, " +
-            f"'{self._db_format(self._method)}', " +
-            f"{self._reach}, " +
-            f"{self._start_kp}, " +
-            f"{self._end_kp}, " +
-            f"{self._dif}, " +
-            f"{self._b}, " +
-            f"{self._c}, " +
-            f"{self._enabled}" +
-            ")"
-        )
-        execute(sql)
-
-        return True
-
-    @property
-    def method(self):
-        return self._method
-
-    @method.setter
-    def method(self, method):
-        self._method = method
-        self._status.modified()
-
-    @property
-    def reach(self):
-        return self._reach
-
-    @reach.setter
-    def reach(self, reach):
-        self._reach = reach
-        self._status.modified()
-
-    @property
-    def start_kp(self):
-        return self._start_kp
-
-    @start_kp.setter
-    def start_kp(self, start_kp):
-        self._start_kp = start_kp
-        self._status.modified()
-
-    @property
-    def end_kp(self):
-        return self._end_kp
-
-    @end_kp.setter
-    def end_kp(self, end_kp):
-        self._end_kp = end_kp
-        self._status.modified()
-
-    @property
-    def dif(self):
-        return self._dif
-
-    @dif.setter
-    def dif(self, dif):
-        self._dif = dif
-        self._status.modified()
-
-    @property
-    def b(self):
-        return self._b
-
-    @b.setter
-    def b(self, b):
-        self._b = b
-        self._status.modified()
-
-    @property
-    def c(self):
-        return self._c
-
-    @c.setter
-    def c(self, c):
-        self._c = c
-        self._status.modified()
-
-    @property
-    def enabled(self):
-        return self._enabled
-
-    @enabled.setter
-    def enabled(self, enabled):
-        self._enabled = enabled
-        self._status.modified()
-
-
-
-
-
-
-
-
-

src/Model/Friction/__init__.py

@@ -1,4 +1,4 @@
-# translate.py -- Pamhyr
+# __init__.py -- Pamhyr
 # Copyright (C) 2023-2024  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
@@ -15,24 +15,3 @@
 # along with this program.  If not, see <https://www.gnu.org/licenses/>.
 
 # -*- coding: utf-8 -*-
-
-from PyQt5.QtCore import QCoreApplication
-
-from View.Translate import MainTranslate
-from View.LateralContributionsAdisTS.translate import LCTranslate
-
-_translate = QCoreApplication.translate
-
-
-class LCETranslate(LCTranslate):
-    def __init__(self):
-        super(LCETranslate, self).__init__()
-        self._dict["Edit lateral contribution AdisTS"] = _translate(
-            "LateralContributionAdisTS", "Edit lateral contribution AdisTS"
-        )
-
-        self._sub_dict["table_headers"] = {
-            "time": self._dict["time"],
-            "date": self._dict["date"],
-            "rate": _translate("LateralContributionAdisTS", "Mass Flow"),
-        }

src/Model/Geometry/__init__.py

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023-2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-

src/Model/HydraulicStructures/Basic/__init__.py

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023-2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-

src/Model/HydraulicStructures/HydraulicStructures.py

@@ -64,7 +64,6 @@ class HydraulicStructure(SQLSubModel):
 
     @classmethod
     def _db_create(cls, execute):
-
         execute("""
           CREATE TABLE hydraulic_structures(
             id INTEGER NOT NULL PRIMARY KEY,
@@ -139,7 +138,6 @@ class HydraulicStructure(SQLSubModel):
         return new
 
     def _db_save(self, execute, data=None):
-        print("save hs unit")
         execute(f"DELETE FROM hydraulic_structures WHERE id = {self.id}")
 
         input_reach_id = -1

src/Model/HydraulicStructures/__init__.py

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023-2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-

src/Model/InitialConditions/__init__.py

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023-2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-

src/Model/InitialConditionsAdisTS/InitialConditionsAdisTS.py

@@ -1,272 +0,0 @@
-# InitialConditionsAdisTS.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-import logging
-from functools import reduce
-
-from tools import trace, timer, old_pamhyr_date_to_timestamp
-
-from Model.Tools.PamhyrDB import SQLSubModel
-from Model.Except import NotImplementedMethodeError
-
-from Model.InitialConditionsAdisTS.InitialConditionsAdisTSSpec import ICAdisTSSpec
-
-logger = logging.getLogger()
-
-class InitialConditionsAdisTS(SQLSubModel):
-    _sub_classes = [
-        ICAdisTSSpec,
-    ]
-    _id_cnt = 0
-
-    def __init__(self, id: int = -1, name: str = "default",
-                 pollutant: int = -1, status=None):
-        super(InitialConditionsAdisTS, self).__init__()
-
-        self._status = status
-
-        if id == -1:
-            self.id = InitialConditionsAdisTS._id_cnt
-        else:
-            self.id = id
-
-        self._name = name
-        self._pollutant = pollutant
-        self._concentration = None
-        self._eg = None
-        self._em = None
-        self._ed = None
-        self._enabled = True
-        self._data = []
-
-        InitialConditionsAdisTS._id_cnt = max(
-            InitialConditionsAdisTS._id_cnt + 1,
-            self.id
-        )
-
-    @classmethod
-    def _db_create(cls, execute):
-        execute("""
-                  CREATE TABLE initial_conditions_adists(
-                    id INTEGER NOT NULL PRIMARY KEY,
-                    pollutant INTEGER NOT NULL,
-                    name TEXT NOT NULL,
-                    concentration REAL NOT NULL,
-                    eg REAL NOT NULL,
-                    em REAL NOT NULL,
-                    ed REAL NOT NULL,
-                    enabled BOOLEAN NOT NULL,
-                    FOREIGN KEY(pollutant) REFERENCES Pollutants(id)
-                  )
-                """)
-
-        return cls._create_submodel(execute)
-
-    @classmethod
-    def _db_update(cls, execute, version):
-        major, minor, release = version.strip().split(".")
-        if major == minor == "0":
-            if int(release) < 6:
-                cls._db_create(execute)
-
-        return True
-
-    @classmethod
-    def _db_load(cls, execute, data=None):
-        new = []
-
-        table = execute(
-            "SELECT id, pollutant, name, concentration, eg, em, ed, " +
-            "enabled " +
-            "FROM initial_conditions_adists"
-        )
-
-        if table is not None:
-            for row in table:
-                IC_id = row[0]
-                pollutant = row[1]
-                name = row[2]
-                concentration = row[3]
-                eg = row[4]
-                em = row[5]
-                ed = row[6]
-                enabled = (row[7] == 1)
-
-                IC = cls(
-                    id=IC_id,
-                    name=name,
-                    status=data['status']
-                )
-
-                IC.pollutant = pollutant
-                IC.concentration = concentration
-                IC.eg = eg
-                IC.em = em
-                IC.ed = ed
-                IC.enabled = enabled
-
-                data['ic_default_id'] = IC_id
-                IC._data = ICAdisTSSpec._db_load(execute, data)
-
-                new.append(IC)
-
-        return new
-
-    def _db_save(self, execute, data=None):
-        execute(f"DELETE FROM initial_conditions_adists WHERE id = {self.id}")
-
-        pollutant = -1
-        if self.pollutant is not None:
-            pollutant = self.pollutant
-
-        concentration = -1.
-        if self.concentration is not None:
-            concentration = self.concentration
-
-        eg = -1.
-        if self.eg is not None:
-            eg = self.eg
-
-        em = -1.
-        if self.em is not None:
-            em = self.em
-
-        ed = -1.
-        if self.ed is not None:
-            ed = self.ed
-
-        sql = (
-            "INSERT INTO " +
-            "initial_conditions_adists(" +
-            "id, pollutant, name, concentration, " +
-            "eg, em, ed, enabled" +
-            ") " +
-            "VALUES (" +
-            f"{self.id}, {pollutant}, '{self._db_format(self._name)}', " +
-            f"{concentration}, {eg}, {em}, {ed}, {self._enabled}" +
-            ")"
-        )
-
-        execute(sql)
-
-        data['ic_default_id'] = self.id
-        execute(
-            "DELETE FROM initial_conditions_spec " +
-            f"WHERE ic_default = {self.id}"
-        )
-
-        for ic_spec in self._data:
-            ic_spec._db_save(execute, data)
-
-        return True
-
-    def __len__(self):
-        return len(self._data)
-
-    @property
-    def name(self):
-        return self._name
-
-    @name.setter
-    def name(self, name):
-        self._name = name
-        self._status.modified()
-
-    @property
-    def pollutant(self):
-        return self._pollutant
-
-    @pollutant.setter
-    def pollutant(self, pollutant):
-        self._pollutant = pollutant
-        self._status.modified()
-
-    @property
-    def concentration(self):
-        return self._concentration
-
-    @concentration.setter
-    def concentration(self, concentration):
-        self._concentration = concentration
-        self._status.modified()
-
-    @property
-    def eg(self):
-        return self._eg
-
-    @eg.setter
-    def eg(self, eg):
-        self._eg = eg
-        self._status.modified()
-
-    @property
-    def em(self):
-        return self._em
-
-    @em.setter
-    def em(self, em):
-        self._em = em
-        self._status.modified()
-
-    @property
-    def ed(self):
-        return self._ed
-
-    @ed.setter
-    def ed(self, ed):
-        self._ed = ed
-        self._status.modified()
-
-    @property
-    def enabled(self):
-        return self._enabled
-
-    @enabled.setter
-    def enabled(self, enabled):
-        self._enabled = enabled
-        self._status.modified()
-
-    def new(self, index):
-        n = ICAdisTSSpec(status=self._status)
-        self._data.insert(index, n)
-        self._status.modified()
-        return n
-
-    def delete(self, data):
-        self._data = list(
-            filter(
-                lambda x: x not in data,
-                self._data
-            )
-        )
-        self._status.modified()
-
-    def delete_i(self, indexes):
-        for ind in indexes:
-            del self._data[ind]
-        self._status.modified()
-
-    def insert(self, index, data):
-        self._data.insert(index, data)
-        self._status.modified()
-
-
-
-
-
-

src/Model/InitialConditionsAdisTS/InitialConditionsAdisTSList.py

@@ -1,66 +0,0 @@
-# InitialConditionsAdisTSList.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-from copy import copy
-from tools import trace, timer
-
-from Model.Tools.PamhyrList import PamhyrModelList
-from Model.InitialConditionsAdisTS.InitialConditionsAdisTS import InitialConditionsAdisTS
-
-class InitialConditionsAdisTSList(PamhyrModelList):
-    _sub_classes = [
-        InitialConditionsAdisTS,
-    ]
-
-    @classmethod
-    def _db_load(cls, execute, data=None):
-        new = cls(status=data['status'])
-
-        if data is None:
-            data = {}
-
-        new._lst = InitialConditionsAdisTS._db_load(
-            execute, data
-        )
-
-        return new
-
-    def _db_save(self, execute, data=None):
-        execute("DELETE FROM initial_conditions_adists")
-
-        if data is None:
-            data = {}
-
-        for ic in self._lst:
-            ic._db_save(execute, data=data)
-
-        return True
-
-    def new(self, index, pollutant):
-        n = InitialConditionsAdisTS(pollutant=pollutant, status=self._status)
-        self._lst.insert(index, n)
-        self._status.modified()
-        return n
-
-    @property
-    def Initial_Conditions_List(self):
-        return self.lst
-
-
-
-

src/Model/InitialConditionsAdisTS/InitialConditionsAdisTSSpec.py

@@ -1,258 +0,0 @@
-# InitialConditionsAdisTSSpec.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-import logging
-
-from tools import trace, timer
-
-from Model.Tools.PamhyrDB import SQLSubModel
-from Model.Except import NotImplementedMethodeError
-
-logger = logging.getLogger()
-
-class ICAdisTSSpec(SQLSubModel):
-    _sub_classes = [
-    ]
-    _id_cnt = 0
-
-    def __init__(self, id: int = -1, name: str = "",
-                 status=None):
-        super(ICAdisTSSpec, self).__init__()
-
-        self._status = status
-
-        if id == -1:
-            self.id = ICAdisTSSpec._id_cnt
-        else:
-            self.id = id
-
-        self._name_section = name
-        self._reach = None
-        self._start_kp = None
-        self._end_kp = None
-        self._concentration = None
-        self._eg = None
-        self._em = None
-        self._ed = None
-        self._rate = None
-        self._enabled = True
-
-        ICAdisTSSpec._id_cnt = max(ICAdisTSSpec._id_cnt + 1, self.id)
-
-    @classmethod
-    def _db_create(cls, execute):
-        execute("""
-              CREATE TABLE initial_conditions_spec(
-                id INTEGER NOT NULL PRIMARY KEY,
-                ic_default INTEGER NOT NULL,
-                name TEXT NOT NULL,
-                reach INTEGER NOT NULL,
-                start_kp REAL NOT NULL,
-                end_kp REAL NOT NULL,
-                concentration REAL NOT NULL,
-                eg REAL NOT NULL,
-                em REAL NOT NULL,
-                ed REAL NOT NULL,
-                rate REAL NOT NULL,
-                enabled BOOLEAN NOT NULL,
-                FOREIGN KEY(ic_default) REFERENCES initial_conditions_adists(id),
-                FOREIGN KEY(reach) REFERENCES river_reach(id)
-              )
-            """)
-
-        return cls._create_submodel(execute)
-
-    @classmethod
-    def _db_update(cls, execute, version):
-        major, minor, release = version.strip().split(".")
-        if major == minor == "0":
-            if int(release) < 6:
-                cls._db_create(execute)
-
-        return True
-
-    @classmethod
-    def _db_load(cls, execute, data=None):
-        new = []
-
-        table = execute(
-            "SELECT id, ic_default, name, reach, start_kp, end_kp, " +
-            "concentration, eg, em, ed, rate, enabled " +
-            "FROM initial_conditions_spec " +
-            f"WHERE ic_default = {data['ic_default_id']} "
-        )
-
-        for row in table:
-            id            = row[0]
-            name          = row[2]
-            reach         = row[3]
-            start_kp      = row[4]
-            end_kp        = row[5]
-            concentration = row[6]
-            eg            = row[7]
-            em            = row[8]
-            ed            = row[9]
-            rate          = row[10]
-            enabled       = (row[11] == 1)
-
-            #new_spec = [name, reach, start_kp, end_kp, concentration, eg, em, ed, rate, enabled]
-
-            new_spec = cls(
-                id=id,
-                name=name,
-                status=data['status']
-            )
-
-            new_spec.reach = reach
-            new_spec.start_kp = start_kp
-            new_spec.end_kp = end_kp
-            new_spec.concentration = concentration
-            new_spec.eg = eg
-            new_spec.em = em
-            new_spec.ed = ed
-            new_spec.rate = rate
-            new_spec.enabled = enabled
-
-            new.append(new_spec)
-
-        return new
-
-    def _db_save(self, execute, data=None):
-        ic_default = data['ic_default_id']
-
-        sql = (
-            "INSERT INTO " +
-            "initial_conditions_spec(id, ic_default, name, reach, " +
-            "start_kp, end_kp, concentration, eg, em, ed, rate, enabled) " +
-            "VALUES (" +
-            f"{self.id}, " +
-            f"{ic_default}, " +
-            f"'{self._db_format(self._name_section)}', " +
-            f"{self._reach}, " +
-            f"{self._start_kp}, " +
-            f"{self._end_kp}, " +
-            f"{self._concentration}, " +
-            f"{self._eg}, " +
-            f"{self._em}, " +
-            f"{self._ed}, " +
-            f"{self._rate}, " +
-            f"{self._enabled}" +
-            ")"
-        )
-        execute(sql)
-
-        return True
-
-    @property
-    def name(self):
-        return self._name_section
-
-    @name.setter
-    def name(self, name):
-        self._name_section = name
-        self._status.modified()
-
-    @property
-    def reach(self):
-        return self._reach
-
-    @reach.setter
-    def reach(self, reach):
-        self._reach = reach
-        self._status.modified()
-
-    @property
-    def start_kp(self):
-        return self._start_kp
-
-    @start_kp.setter
-    def start_kp(self, start_kp):
-        self._start_kp = start_kp
-        self._status.modified()
-
-    @property
-    def end_kp(self):
-        return self._end_kp
-
-    @end_kp.setter
-    def end_kp(self, end_kp):
-        self._end_kp = end_kp
-        self._status.modified()
-
-    @property
-    def concentration(self):
-        return self._concentration
-
-    @concentration.setter
-    def concentration(self, concentration):
-        self._concentration = concentration
-        self._status.modified()
-
-    @property
-    def eg(self):
-        return self._eg
-
-    @eg.setter
-    def eg(self, eg):
-        self._eg = eg
-        self._status.modified()
-
-    @property
-    def em(self):
-        return self._em
-
-    @em.setter
-    def em(self, em):
-        self._em = em
-        self._status.modified()
-
-    @property
-    def ed(self):
-        return self._ed
-
-    @ed.setter
-    def ed(self, ed):
-        self._ed = ed
-        self._status.modified()
-
-    @property
-    def rate(self):
-        return self._rate
-
-    @rate.setter
-    def rate(self, rate):
-        self._rate = rate
-        self._status.modified()
-
-    @property
-    def enabled(self):
-        return self._enabled
-
-    @enabled.setter
-    def enabled(self, enabled):
-        self._enabled = enabled
-        self._status.modified()
-
-
-
-
-
-
-
-
-

src/Model/LateralContribution/__init__.py

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023-2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-

src/Model/LateralContributionsAdisTS/LateralContributionAdisTS.py

@@ -1,215 +0,0 @@
-# LateralContributionAdisTS.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-import logging
-
-from tools import (
-    trace, timer,
-    old_pamhyr_date_to_timestamp,
-    date_iso_to_timestamp,
-    date_dmy_to_timestamp,
-)
-
-from Model.Tools.PamhyrDB import SQLSubModel
-from Model.Except import NotImplementedMethodeError
-
-logger = logging.getLogger()
-
-class LateralContributionAdisTS(SQLSubModel):
-    _sub_classes = []
-    _id_cnt = 0
-
-    def __init__(self, id: int = -1, pollutant: int = -1, name: str = "", status=None):
-        super(LateralContributionAdisTS, self).__init__()
-
-        self._status = status
-
-        if id == -1:
-            self.id = LateralContributionAdisTS._id_cnt
-        else:
-            self.id = id
-
-        self._pollutant = pollutant
-        self._edge = None
-        self._begin_kp = 0.0
-        self._end_kp = 0.0
-        self._data = []
-        self._header = ["time", "rate"]
-        self._types = [self.time_convert, float]
-
-        LateralContributionAdisTS._id_cnt = max(
-            LateralContributionAdisTS._id_cnt + 1, self.id)
-
-    @classmethod
-    def _db_create(cls, execute):
-        execute("""
-          CREATE TABLE lateral_contribution_adists(
-            id INTEGER NOT NULL PRIMARY KEY,
-            pollutant INTEGER NOT NULL,
-            edge INTEGER NOT NULL,
-            begin_kp REAL NOT NULL,
-            end_kp REAL NOT NULL,
-            FOREIGN KEY(pollutant) REFERENCES Pollutants(id),
-            FOREIGN KEY(edge) REFERENCES river_reach(id)
-          )
-        """)
-
-        execute("""
-          CREATE TABLE lateral_contribution_data_adists(
-            id INTEGER NOT NULL PRIMARY KEY AUTOINCREMENT,
-            data0 TEXT NOT NULL,
-            data1 TEXT NOT NULL,
-            lc INTEGER,
-            FOREIGN KEY(lc) REFERENCES lateral_contribution(id)
-          )
-        """)
-
-        return cls._create_submodel(execute)
-
-    @classmethod
-    def _db_update(cls, execute, version):
-        return True
-
-    @classmethod
-    def _db_load(cls, execute, data=None):
-        new = []
-
-        table = execute(
-            "SELECT id, pollutant, edge, begin_kp, end_kp " +
-            "FROM lateral_contribution_adists"
-        )
-
-        if table is not None:
-            for row in table:
-                lc = cls(
-                    id=row[0],
-                    pollutant=row[1],
-                    status=data['status']
-                )
-
-                lc.edge = row[2]
-                lc.begin_kp = row[3]
-                lc.end_kp = row[4]
-
-                values = execute(
-                    "SELECT data0, data1 FROM lateral_contribution_data_adists " +
-                    f"WHERE lc = '{lc.id}'"
-                )
-
-                # Write data
-                for v in values:
-                    data0 = lc._types[0](v[0])
-                    data1 = lc._types[1](v[1])
-                    # Replace data at pos ind
-                    lc._data.append((data0, data1))
-
-                new.append(lc)
-
-        return new
-
-    def _db_save(self, execute, data=None):
-
-        execute(f"DELETE FROM lateral_contribution_adists WHERE id = {self.id}")
-        execute(f"DELETE FROM lateral_contribution_data_adists WHERE lc = {self.id}")
-
-        sql = (
-            "INSERT INTO " +
-            "lateral_contribution_adists(id, pollutant, edge, begin_kp, end_kp) " +
-            "VALUES (" +
-            f"{self.id}, {self._pollutant}, {self.edge}, " +
-            f"{self._begin_kp}, {self._end_kp}" +
-            ")"
-        )
-        execute(sql)
-
-        for d in self._data:
-            data0 = self._db_format(str(d[0]))
-            data1 = self._db_format(str(d[1]))
-
-            sql = (
-                "INSERT INTO " +
-                "lateral_contribution_data_adists(data0, data1, lc) " +
-                f"VALUES ('{data0}', {data1}, {self.id})"
-            )
-            execute(sql)
-
-        return True
-
-    def __len__(self):
-        return len(self._data)
-
-    @classmethod
-    def time_convert(cls, data):
-        if type(data) is str:
-            if data.count("-") == 2:
-                return date_iso_to_timestamp(data)
-            if data.count("/") == 2:
-                return date_dmy_to_timestamp(data)
-            if data.count(":") == 3:
-                return old_pamhyr_date_to_timestamp(data)
-            if data.count(":") == 2:
-                return old_pamhyr_date_to_timestamp("00:" + data)
-            if data.count(".") == 1:
-                return round(float(data))
-
-        return int(data)
-
-    @property
-    def edge(self):
-        return self._edge
-
-    @edge.setter
-    def edge(self, edge):
-        self._edge = edge
-        self._status.modified()
-
-    @property
-    def header(self):
-        return self._header.copy()
-
-    @header.setter
-    def header(self, header):
-        self._header = header
-        self._status.modified()
-
-    @property
-    def pollutant(self):
-        return self._pollutant
-
-    @property
-    def data(self):
-        return self._data.copy()
-
-    @property
-    def begin_kp(self):
-        return self._begin_kp
-
-    @begin_kp.setter
-    def begin_kp(self, begin_kp):
-        self._begin_kp = begin_kp
-        self._status.modified()
-
-    @property
-    def end_kp(self):
-        return self._end_kp
-
-    @end_kp.setter
-    def end_kp(self, end_kp):
-        self._end_kp = end_kp
-        self._status.modified()
-

src/Model/LateralContributionsAdisTS/LateralContributionsAdisTSList.py

@@ -1,65 +0,0 @@
-# LateralContributionsAdisTSList.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-from copy import copy
-from tools import trace, timer
-
-from Model.Tools.PamhyrList import PamhyrModelList
-from Model.Except import NotImplementedMethodeError
-
-from Model.LateralContributionsAdisTS.LateralContributionAdisTS import LateralContributionAdisTS
-
-class LateralContributionsAdisTSList(PamhyrModelList):
-    _sub_classes = [
-        LateralContributionAdisTS,
-    ]
-
-    @classmethod
-    def _db_load(cls, execute, data=None):
-        new = cls(status=data['status'])
-
-        if data is None:
-            data = {}
-
-        new._lst = LateralContributionAdisTS._db_load(
-            execute, data
-        )
-
-        return new
-
-    def _db_save(self, execute, data=None):
-        execute("DELETE FROM lateral_contribution_adists")
-        execute("DELETE FROM lateral_condition_data_adists")
-
-        if data is None:
-            data = {}
-
-        for lc in self._lst:
-            lc._db_save(execute, data=data)
-
-        return True
-
-    def new(self, index, pollutant):
-        n = LateralContributionAdisTS(pollutant=pollutant, status=self._status)
-        self._lst.insert(index, n)
-        self._status.modified()
-        return n
-
-    @property
-    def Lat_Cont_List(self):
-        return self.lst

src/Model/OutputKpAdists/OutputKpAdists.py

@@ -1,164 +0,0 @@
-# OutputKpAdists.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-import logging
-
-from tools import (
-    trace, timer,
-    old_pamhyr_date_to_timestamp,
-    date_iso_to_timestamp,
-    date_dmy_to_timestamp,
-)
-
-from Model.Tools.PamhyrDB import SQLSubModel
-from Model.Except import NotImplementedMethodeError
-
-logger = logging.getLogger()
-
-class OutputKpAdists(SQLSubModel):
-    _sub_classes = []
-    _id_cnt = 0
-
-    def __init__(self, id: int = -1, reach = None, kp = None, title: str = "",  status=None):
-        super(OutputKpAdists, self).__init__()
-
-        self._status = status
-
-        if id == -1:
-            self.id = OutputKpAdists._id_cnt
-        else:
-            self.id = id
-
-        self._reach = reach
-        self._kp = kp
-        self._title = str(title)
-        self._enabled = True
-
-        OutputKpAdists._id_cnt = max(
-            OutputKpAdists._id_cnt + 1, self.id)
-
-    @property
-    def reach(self):
-        return self._reach
-
-    @reach.setter
-    def reach(self, reach_id):
-        self._reach = reach_id
-        self._status.modified()
-
-    @property
-    def kp(self):
-        return self._kp
-
-    @kp.setter
-    def kp(self, profile_id):
-        self._kp = profile_id
-        self._status.modified()
-
-    @property
-    def title(self):
-        return self._title
-
-    @title.setter
-    def title(self, title):
-        self._title = title
-        self._status.modified()
-
-
-    @classmethod
-    def _db_create(cls, execute):
-
-        sql = (
-            "CREATE TABLE OutputKpAdists(" +
-            "id INTEGER NOT NULL PRIMARY KEY, " +
-            "reach INTEGER NOT NULL, " +
-            "kp REAL NOT NULL, " +
-            "title TEXT NOT NULL, " +
-            "FOREIGN KEY(reach) REFERENCES river_reach(id)" +
-            ")"
-        )
-
-        execute(sql)
-
-        return cls._create_submodel(execute)
-
-    @classmethod
-    def _db_update(cls, execute, version):
-        return True
-
-    @classmethod
-    def _db_load(cls, execute, data=None):
-        new = []
-
-        #reach   = data["reach"]
-        #profile = data["profile"]
-        status  = data["status"]
-
-        table = execute(
-            "SELECT id, reach, kp, title " +
-            f"FROM OutputKpAdists"
-        )
-
-        if table is not None:
-            for row in table:
-                id       = row[0]
-                id_reach = row[1]
-                id_kp    = row[2]
-                title    = row[3]
-
-                new_output = cls(
-                    id=id, reach=id_reach,
-                    kp=id_kp, title=title,
-                    status=status
-                )
-
-                new.append(new_output)
-
-        return new
-
-    def _db_save(self, execute, data=None):
-
-        execute(f"DELETE FROM OutputKpAdists WHERE id = {self.id}")
-
-        sql = (
-            "INSERT INTO " +
-            "OutputKpAdists(id, reach, kp, title) " +
-            "VALUES (" +
-            f"{self.id}, {self._reach}, {self._kp}, " +
-            f"'{self._db_format(self._title)}'" +
-            ")"
-        )
-
-        execute(sql)
-
-        return True
-
-    @property
-    def enabled(self):
-        return self._enabled
-
-    @enabled.setter
-    def enabled(self, enabled):
-        self._enabled = enabled
-        self._status.modified()
-
-
-
-
-
-

src/Model/OutputKpAdists/OutputKpListAdists.py

@@ -1,56 +0,0 @@
-# OutputKpListAdists.py -- Pamhyr
-# Copyright (C) 2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-from tools import trace, timer
-
-from Model.Except import NotImplementedMethodeError
-from Model.Tools.PamhyrList import PamhyrModelList
-from Model.OutputKpAdists.OutputKpAdists import OutputKpAdists
-
-
-class OutputKpAdistsList(PamhyrModelList):
-    _sub_classes = [OutputKpAdists]
-
-    @classmethod
-    def _db_load(cls, execute, data=None):
-        new = cls(status=data["status"])
-
-        new._lst = OutputKpAdists._db_load(execute, data)
-
-        return new
-
-    def _db_save(self, execute, data=None):
-        ok = True
-
-        # Delete previous data
-        execute("DELETE FROM OutputKpAdists")
-
-        for sl in self._lst:
-            ok &= sl._db_save(execute, data)
-
-        return ok
-
-    @property
-    def OutputKp_List(self):
-        return self.lst
-
-    def new(self, lst, index):
-        n = OutputKpAdists(status=self._status)
-        self._lst.insert(index, n)
-        self._status.modified()
-        return n

src/Model/Pollutants/Pollutants.py

@@ -1,186 +0,0 @@
-# Pollutants.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-import logging
-
-from tools import (
-    trace, timer,
-    old_pamhyr_date_to_timestamp,
-    date_iso_to_timestamp,
-    date_dmy_to_timestamp,
-)
-
-from Model.Tools.PamhyrDB import SQLSubModel
-from Model.Except import NotImplementedMethodeError
-
-logger = logging.getLogger()
-
-class Pollutants(SQLSubModel):
-    _sub_classes = []
-    _id_cnt = 0
-
-    def __init__(self, id: int = -1, name: str = "",  status=None):
-        super(Pollutants, self).__init__()
-
-        self._status = status
-
-        if id == -1:
-            self.id = Pollutants._id_cnt
-        else:
-            self.id = id
-
-        self._name = str(name)
-        self._enabled = True
-
-        self._data = []
-
-        Pollutants._id_cnt = max(
-            Pollutants._id_cnt + 1, self.id)
-
-    @property
-    def name(self):
-        return self._name
-
-    @name.setter
-    def name(self, name):
-        self._name = name
-        self._status.modified()
-
-    @property
-    def data(self):
-        return self._data.copy()
-
-    @classmethod
-    def _db_create(cls, execute):
-        execute("""
-          CREATE TABLE Pollutants(
-            id INTEGER NOT NULL PRIMARY KEY,
-            name TEXT NOT NULL UNIQUE
-          )
-        """)
-
-        execute("""
-          CREATE TABLE Pollutants_characteristics(
-            id INTEGER NOT NULL PRIMARY KEY,
-            type INTEGER NOT NULL,
-            diametre REAL NOT NULL,
-            rho REAL NOT NULL,
-            porosity REAL NOT NULL,
-            cdc_riv REAL NOT NULL,
-            cdc_cas REAL NOT NULL,
-            apd REAL NOT NULL,
-            ac REAL NOT NULL,
-            bc REAL NOT NULL,
-            pollutant INTEGER NOT NULL,
-            FOREIGN KEY(pollutant) REFERENCES Pollutants(id)
-          )
-        """)
-
-        return cls._create_submodel(execute)
-
-    @classmethod
-    def _db_update(cls, execute, version):
-        return True
-
-    @classmethod
-    def _db_load(cls, execute, data=None):
-        new = []
-
-        status  = data["status"]
-
-        table = execute(
-            "SELECT id, name " +
-            f"FROM Pollutants"
-        )
-
-        if table is not None:
-            for row in table:
-                id   = row[0]
-                name = row[1]
-
-                new_pollutant = cls(
-                    id=id, name=name,
-                    status=status
-                )
-
-                new_data = []
-                table = execute(
-                    "SELECT * " +
-                    "FROM Pollutants_characteristics " +
-                    f"WHERE pollutant = {id}"
-                )
-
-                if table is not None:
-                    for t in table:
-                        new_data = t[1:]
-
-                new_pollutant._data.append(new_data)
-
-                new.append(new_pollutant)
-
-        return new
-
-    def _db_save(self, execute, data=None):
-
-        execute(f"DELETE FROM Pollutants WHERE id = {self.id}")
-        execute(f"DELETE FROM Pollutants_characteristics WHERE pollutant = {self.id}")
-
-        sql = (
-            "INSERT INTO " +
-            "Pollutants(id, name) " +
-            "VALUES (" +
-            f"{self.id}, " +
-            f"'{self._db_format(self._name)}'" +
-            ")"
-        )
-
-        execute(sql)
-
-        for d in self._data:
-            sql = (
-                "INSERT INTO " +
-                "Pollutants_characteristics(type, diametre, rho, porosity, " +
-                "cdc_riv, cdc_cas, apd, ac, bc, pollutant) " +
-                f"VALUES ({d[0]}, {d[1]}, {d[2]},{d[3]}, {d[4]}, "
-                f"{d[5]}, {d[6]}, {d[7]}, {d[8]}, {self.id})"
-            )
-            execute(sql)
-
-        return True
-
-    @property
-    def enabled(self):
-        return self._enabled
-
-    @enabled.setter
-    def enabled(self, enabled):
-        self._enabled = enabled
-        self._status.modified()
-
-    def is_define(self):
-        return len(self._data) != 0
-
-    def __len__(self):
-        return len(self._data)
-
-
-
-
-
-
-

src/Model/Pollutants/PollutantsList.py

@@ -1,56 +0,0 @@
-# PollutantsList.py -- Pamhyr
-# Copyright (C) 2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-from tools import trace, timer
-
-from Model.Except import NotImplementedMethodeError
-from Model.Tools.PamhyrList import PamhyrModelList
-from Model.Pollutants.Pollutants import Pollutants
-
-
-class PollutantsList(PamhyrModelList):
-    _sub_classes = [Pollutants]
-
-    @classmethod
-    def _db_load(cls, execute, data=None):
-        new = cls(status=data["status"])
-
-        new._lst = Pollutants._db_load(execute, data)
-
-        return new
-
-    def _db_save(self, execute, data=None):
-        ok = True
-
-        # Delete previous data
-        execute("DELETE FROM Pollutants")
-
-        for sl in self._lst:
-            ok &= sl._db_save(execute, data)
-
-        return ok
-
-    @property
-    def Pollutants_List(self):
-        return self.lst
-
-    def new(self, lst, index):
-        n = Pollutants(status=self._status)
-        self._lst.insert(index, n)
-        self._status.modified()
-        return n

src/Model/REPLine/__init__.py

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023-2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-

src/Model/Reservoir/__init__.py

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023-2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-

src/Model/Results/ResultsAdisTS.py

@@ -1,83 +0,0 @@
-# Results.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-import logging
-import numpy as np
-import os, glob
-
-from copy import deepcopy
-from datetime import datetime
-
-from Model.Results.River.RiverAdisTS import River
-
-logger = logging.getLogger()
-
-
-class Results(object):
-    def __init__(self, study=None, solver=None,
-                 repertory="", name="0"):
-        self._study = study
-        self._solver = solver
-        self._repertory = repertory
-        self._name = name
-
-        self._river = River(self._study)
-
-        self._meta_data = {
-            # Keep results creation date
-            "creation_date": datetime.now(),
-        }
-
-        repertory_results = os.path.join(repertory, "resultats")
-        self._pollutants_list = [el.split("/")[-1][0:-4] for el in glob.glob(repertory_results + "/*.bin")]
-
-        self._phys_var_list = ["C", "G", "M", "D", "L", "N", "R"]
-
-        print("*********files names resultats from Results Object: ", self._pollutants_list)
-
-    @property
-    def date(self):
-        date = self._meta_data["creation_date"]
-        return f"{date.isoformat(sep=' ')}"
-
-    @property
-    def river(self):
-        return self._river
-
-    @property
-    def study(self):
-        return self._study
-
-    @property
-    def pollutants_list(self):
-        return self._pollutants_list
-
-    @property
-    def phys_var_list(self):
-        return self._phys_var_list
-
-    def set(self, key, value):
-        self._meta_data[key] = value
-
-    def get(self, key):
-        return self._meta_data[key]
-
-    def reload(self):
-        return self._solver.results(
-            self._study,
-            self._repertory,
-            qlog=None,
-        )

src/Model/Results/River/RiverAdisTS.py

@@ -1,136 +0,0 @@
-# River.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-import logging
-
-from datetime import datetime
-
-logger = logging.getLogger()
-
-
-class Profile(object):
-    def __init__(self, profile, study):
-        self._study = study
-        self._profile = profile  # Source profile in the study
-        self._data = {}  # Dict of dict {<ts>: {<key>: <value>, ...}, ...}
-
-    def __len__(self):
-        return len(self._data)
-
-    @property
-    def name(self):
-        return self._profile.name
-
-    @property
-    def kp(self):
-        return self._profile.kp
-
-    @property
-    def geometry(self):
-        return self._profile
-
-    def set(self, timestamp, key, data):
-        if timestamp not in self._data:
-            self._data[timestamp] = {}
-
-        self._data[timestamp][key] = data
-
-    def get_ts(self, timestamp):
-        return self._data[timestamp]
-
-    def get_key(self, key):
-        return list(
-            map(lambda ts: self._data[ts][key], self._data)
-        )
-
-    def get_ts_key(self, timestamp, key):
-        return self._data[timestamp][key]
-
-    def has_sediment(self):
-        return any(map(lambda ts: "sl" in self._data[ts], self._data))
-
-
-class Reach(object):
-    def __init__(self, reach, study):
-        self._study = study
-        self._reach = reach  # Source reach in the study
-        self._profiles = list(
-            map(
-                lambda p: Profile(p, self._study),
-                reach.profiles
-            )
-        )
-
-    def __len__(self):
-        return len(self._profiles)
-
-    @property
-    def name(self):
-        return self._reach.name
-
-    @property
-    def geometry(self):
-        return self._reach
-
-    @property
-    def profiles(self):
-        return self._profiles.copy()
-
-    def profile(self, id):
-        return self._profiles[id]
-
-    def set(self, profile_id, timestamp, key, data):
-        self._profiles[profile_id].set(timestamp, key, data)
-
-    def has_sediment(self):
-        return any(map(lambda profile: profile.has_sediment(), self._profiles))
-
-
-class River(object):
-    def __init__(self, study):
-        self._study = study
-
-        # Dict with timestamps as key
-        self._reachs = []
-
-    def __len__(self):
-        return len(self._reachs)
-
-    @property
-    def reachs(self):
-        return self._reachs.copy()
-
-    def reach(self, id):
-        return self._reachs[id]
-
-    def has_reach(self, id):
-        return 0 <= id < len(self._reachs)
-
-    def add(self, reach_id):
-        reachs = self._study.river.enable_edges()
-
-        new = Reach(reachs[reach_id].reach, self._study)
-
-        self._reachs.append(new)
-        return new
-
-    def get_reach_by_geometry(self, geometry_reach):
-        return next(
-            filter(
-                lambda r: r.geometry is geometry_reach,
-                self._reachs
-            )
-        )

src/Model/Results/River/__init__.py

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023-2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-

src/Model/Results/__init__.py

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023-2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-

src/Model/River.py

@@ -45,14 +45,6 @@ from Model.REPLine.REPLineList import REPLineList
 
 from Solver.Solvers import solver_type_list
 
-from Model.OutputKpAdists.OutputKpListAdists import OutputKpAdistsList
-from Model.Pollutants.PollutantsList import PollutantsList
-from Model.InitialConditionsAdisTS.InitialConditionsAdisTSList import InitialConditionsAdisTSList
-from Model.BoundaryConditionsAdisTS.BoundaryConditionsAdisTSList import BoundaryConditionsAdisTSList
-from Model.LateralContributionsAdisTS.LateralContributionsAdisTSList import LateralContributionsAdisTSList
-from Model.D90AdisTS.D90AdisTSList import D90AdisTSList
-from Model.DIFAdisTS.DIFAdisTSList import DIFAdisTSList
-
 
 class RiverNode(Node, SQLSubModel):
     _sub_classes = []
@@ -236,13 +228,6 @@ class River(Graph, SQLSubModel):
         HydraulicStructureList,
         AddFileList,
         REPLineList,
-        OutputKpAdistsList,
-        PollutantsList,
-        InitialConditionsAdisTSList,
-        BoundaryConditionsAdisTSList,
-        LateralContributionsAdisTSList,
-        D90AdisTSList,
-        DIFAdisTSList,
     ]
 
     def __init__(self, status=None):
@@ -266,13 +251,6 @@ class River(Graph, SQLSubModel):
         )
         self._additional_files = AddFileList(status=self._status)
         self._rep_lines = REPLineList(status=self._status)
-        self._Output_kp_adists = OutputKpAdistsList(status=self._status)
-        self._Pollutants = PollutantsList(status=self._status)
-        self._InitialConditionsAdisTS = InitialConditionsAdisTSList(status=self._status)
-        self._BoundaryConditionsAdisTS = BoundaryConditionsAdisTSList(status=self._status)
-        self._LateralContributionsAdisTS = LateralContributionsAdisTSList(status=self._status)
-        self._D90AdisTS = D90AdisTSList(status=self._status)
-        self._DIFAdisTS = DIFAdisTSList(status=self._status)
 
     @classmethod
     def _db_create(cls, execute):
@@ -347,22 +325,6 @@ class River(Graph, SQLSubModel):
         )
         new._rep_lines = REPLineList._db_load(execute, data)
 
-        new._Output_kp_adists = OutputKpAdistsList._db_load(
-            execute, data
-        )
-
-        new._Pollutants = PollutantsList._db_load(execute, data)
-
-        new._InitialConditionsAdisTS = InitialConditionsAdisTSList._db_load(execute, data)
-
-        new._BoundaryConditionsAdisTS = BoundaryConditionsAdisTSList._db_load(execute, data)
-
-        new._LateralContributionsAdisTS = LateralContributionsAdisTSList._db_load(execute, data)
-
-        new._D90AdisTS = D90AdisTSList._db_load(execute, data)
-
-        new._DIFAdisTS = DIFAdisTSList._db_load(execute, data)
-
         return new
 
     def _db_save(self, execute, data=None):
@@ -382,14 +344,6 @@ class River(Graph, SQLSubModel):
         for solver in self._parameters:
             objs.append(self._parameters[solver])
 
-        objs.append(self._Output_kp_adists)
-        objs.append(self._Pollutants)
-        objs.append(self._InitialConditionsAdisTS)
-        objs.append(self._BoundaryConditionsAdisTS)
-        objs.append(self._LateralContributionsAdisTS)
-        objs.append(self._D90AdisTS)
-        objs.append(self._DIFAdisTS)
-
         self._save_submodel(execute, objs, data)
         return True
 
@@ -512,34 +466,6 @@ Last export at: @date."""
     def parameters(self):
         return self._parameters
 
-    @property
-    def Output_kp_adists(self):
-        return self._Output_kp_adists
-
-    @property
-    def Pollutants(self):
-        return self._Pollutants
-
-    @property
-    def initial_conditions_adists(self):
-        return self._InitialConditionsAdisTS
-
-    @property
-    def boundary_conditions_adists(self):
-        return self._BoundaryConditionsAdisTS
-
-    @property
-    def lateral_contributions_adists(self):
-        return self._LateralContributionsAdisTS
-
-    @property
-    def d90_adists(self):
-        return self._D90AdisTS
-
-    @property
-    def dif_adists(self):
-        return self._DIFAdisTS
-
     def get_params(self, solver):
         if solver in self._parameters:
             return self._parameters[solver]

src/Model/SedimentLayer/__init__.py

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023-2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-

src/Model/SolverParameters/__init__.py

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023-2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-

src/Model/Stricklers/__init__.py

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023-2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-

src/Model/Study.py

@@ -72,7 +72,7 @@ class Study(SQLModel):
             StudyNetworkReachChecker(),
             StudyGeometryChecker(),
             StudyInitialConditionsChecker(),
-            #StudyBoundaryConditionChecker(),
+            StudyBoundaryConditionChecker(),
             # DummyOK(),
             # DummyWARNING(),
             # DummyERROR(),

src/Model/Tools/__init__.py

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023-2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-

src/Modules.py

@@ -54,7 +54,6 @@ class Modules(IterableFlag):
     RESERVOIR = auto()
     SEDIMENT_LAYER = auto()
     ADDITIONAL_FILES = auto()
-    OUTPUT_KP = auto()
 
     # Results
     RESULTS = auto()
@@ -78,7 +77,6 @@ class Modules(IterableFlag):
             cls.ADDITIONAL_FILES,
             cls.RESULTS,
             cls.WINDOW_LIST,
-            cls.OUTPUT_KP,
         ]
 
     @classmethod

src/Scripts/__init__.py

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023-2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-

src/Solver/AdisTS.py

@@ -1,731 +0,0 @@
-# AdisTS.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-import os, glob
-import logging
-from http.cookiejar import reach
-
-import numpy as np
-
-import shutil
-
-from tools import (
-    trace, timer, logger_exception,
-    timestamp_to_old_pamhyr_date,
-    old_pamhyr_date_to_timestamp,
-    timestamp_to_old_pamhyr_date_adists
-)
-
-from Solver.CommandLine import CommandLineSolver
-
-from Model.Results.ResultsAdisTS import Results
-from Model.Results.River.River import River, Reach, Profile
-
-from Checker.Adists import (
-    AdistsOutputKpChecker,
-)
-
-logger = logging.getLogger()
-
-def adists_file_open(filepath, mode):
-    f = open(filepath, mode)
-
-    if "w" in mode:
-        # Write header
-        comment = "*"
-        if ".ST" in filepath:
-            comment = "#"
-
-        f.write(
-            f"{comment} " +
-            "This file is generated by PAMHYR, please don't modify\n"
-        )
-
-    return f
-
-class AdisTS(CommandLineSolver):
-    _type = "adists"
-
-    def __init__(self, name):
-        super(AdisTS, self).__init__(name)
-
-        self._type = "adists"
-
-        self._cmd_input = ""
-        self._cmd_solver = "@path @input -o @output"
-        self._cmd_output = ""
-
-    @classmethod
-    def default_parameters(cls):
-        lst = super(AdisTS, cls).default_parameters()
-
-        lst += [
-            ("adists_implicitation_parameter", "0.5"),
-            ("adists_timestep_screen", "60"),
-            ("adists_timestep_bin", "60"),
-            ("adists_timestep_csv", "60"),
-            ("adists_timestep_mage", "60"),
-            ("adists_initial_concentration", "60"),
-        ]
-
-        return lst
-
-    @classmethod
-    def checkers(cls):
-        lst = [
-            AdistsOutputKpChecker(),
-        ]
-
-        return lst
-
-    def cmd_args(self, study):
-        lst = super(AdisTS, self).cmd_args(study)
-        return lst
-
-    def input_param(self):
-        name = self._study.name
-        return f"{name}.REP"
-
-    def log_file(self):
-        name = self._study.name
-        return f"{name}.TRA"
-
-    def _export_REP_additional_lines(self, study, rep_file):
-        lines = filter(
-            lambda line: line.is_enabled(),
-            study.river.rep_lines.lines
-        )
-
-        for line in lines:
-            rep_file.write(line.line)
-
-    def _export_REP(self, study, repertory, mage_rep, files, qlog, name="0"):
-
-        if qlog is not None:
-            qlog.put("Export REP file")
-
-        # Write header
-        with adists_file_open(
-                os.path.join(
-                    repertory, f"{name}.REP"
-                ), "w+"
-        ) as f:
-
-            f.write(f"NET ../{mage_rep}/{name}.NET\n")
-            f.write(f"REP ../{mage_rep}/{name}.REP\n")
-
-            for file in files:
-                EXT = file.split('.')[1]
-                f.write(f"{EXT} {file}\n")
-
-            self._export_REP_additional_lines(study, f)
-
-        path_mage_net = os.path.join(os.path.abspath(os.path.join(repertory, os.pardir)), f"{mage_rep}/net")
-        path_adists_net = os.path.join(repertory, "net")
-
-        if os.path.exists(path_mage_net):
-            shutil.copytree(path_mage_net, path_adists_net, dirs_exist_ok=True)
-
-    @timer
-    def export(self, study, repertory, qlog=None):
-        self._study = study
-        name = study.name.replace(" ", "_")
-
-        self.export_additional_files(study, repertory, qlog, name=name)
-
-        return True
-
-    ###########
-    # RESULTS #
-    ###########
-
-    def read_bin(self, study, repertory, results, qlog=None, name="0"):
-        return
-
-    @timer
-    def results(self, study, repertory, qlog=None, name="0"):
-        results = Results(
-            study=study,
-            solver=self,
-            repertory=repertory,
-            name=name,
-        )
-        self.read_bin(study, repertory, results, qlog, name=name)
-
-        return results
-
-    def output_param(self):
-        name = ""
-        return f"{name}"
-
-################################
-# Adis-TS in low coupling mode #
-################################
-
-
-class AdisTSlc(AdisTS):
-    _type = "adistslc"
-
-    def __init__(self, name):
-        super(AdisTSlc, self).__init__(name)
-
-        self._type = "adistslc"
-
-    @classmethod
-    def default_parameters(cls):
-        lst = super(AdisTSlc, cls).default_parameters()
-
-        # Insert new parameters at specific position
-        names = list(map(lambda t: t[0], lst))
-
-        return lst
-
-    ##########
-    # Export #
-    ##########
-
-    def cmd_args(self, study):
-        lst = super(AdisTSlc, self).cmd_args(study)
-
-        return lst
-
-    def _export_POLs(self, study, repertory, qlog=None, name="0"):
-
-        files = []
-
-        if qlog is not None:
-            qlog.put("Export POLS files")
-
-        pollutants = study.river.Pollutants.Pollutants_List
-
-        for pollutant in pollutants:
-            name = pollutant.name
-            with adists_file_open(os.path.join(repertory, f"{name}.POL"), "w+") as f:
-                files.append(f"{name}.POL")
-                f.write(f"*Polluant A contaminé aux PCB\n")
-                f.write(f"name = {name}\n")
-
-                self._export_POL_Characteristics(study, pollutant._data, f, qlog)
-
-                POL_ICs = next(filter(lambda ic: ic.pollutant == pollutant.id,\
-                                      study.river.initial_conditions_adists.Initial_Conditions_List))
-
-                if POL_ICs.concentration != None:
-                    f.write(f"file_ini = {name}.INI\n")
-                    self._export_ICs_AdisTS(study, repertory, POL_ICs, qlog, name)
-
-                POL_BCs = list(filter(lambda bc: bc.pollutant == pollutant.id,\
-                                      study.river.boundary_conditions_adists.BCs_AdisTS_List))
-
-                if len(POL_BCs) != 0:
-                    f.write(f"file_cl = {name}.CDT\n")
-                    self._export_BCs_AdisTS(study, repertory, POL_BCs, qlog, name)
-
-                POL_LAT_Cont = list(filter(lambda lc: lc.pollutant == pollutant.id,\
-                                      study.river.lateral_contributions_adists.Lat_Cont_List))
-
-                if len(POL_LAT_Cont) != 0:
-                    f.write(f"file_ald = {name}.ALD\n")
-                    f.write(f"*\n")
-                    self._export_Lat_AdisTS(study, repertory, POL_LAT_Cont, qlog, name)
-
-        return files
-
-    def _export_Lat_AdisTS(self, study, repertory, POL_LC, qlog, POL_name):
-
-        if qlog is not None:
-            qlog.put("Export POL LCs files")
-
-        with adists_file_open(os.path.join(repertory, f"{POL_name}.ALD"), "w+") as f:
-            for LC in POL_LC:
-                reach_name = next(filter(lambda edge: edge.id == LC.edge, study.river.edges())).name
-                f.write(f"${reach_name} {LC.begin_kp} {LC.end_kp}\n")
-                f.write(f"*temps   |débit massique (kg/s)\n")
-                f.write(f"*---------++++++++++\n")
-
-                for LC_data in LC._data:
-                    f.write(f"{timestamp_to_old_pamhyr_date_adists(int(LC_data[0]))} {LC_data[1]}\n")
-                f.write(f"*\n")
-
-        return True
-
-    def _export_BCs_AdisTS(self, study, repertory, POL_BC, qlog, POL_name):
-
-        if qlog is not None:
-            qlog.put("Export POL BCs files")
-
-        with adists_file_open(os.path.join(repertory, f"{POL_name}.CDT"), "w+") as f:
-            for BC in POL_BC:
-                node_name = next(filter(lambda x: x.id == BC.node, study.river._nodes)).name
-                f.write(f"${node_name}\n")
-
-                if BC.type == "Concentration":
-                    f.write(f"*temps |concentration\n")
-                    f.write(f"*JJ:HH:MM | (g/L)\n")
-                    f.write(f"*---------++++++++++\n")
-                else:
-                    f.write(f"*temps |rate\n")
-                    f.write(f"*JJ:HH:MM | (kg/s)\n")
-                    f.write(f"*---------++++++++++\n")
-
-                for BC_data in BC._data:
-                    f.write(f"{timestamp_to_old_pamhyr_date_adists(int(BC_data[0]))} {BC_data[1]}\n")
-                f.write(f"*\n")
-
-        return True
-
-    def _export_ICs_AdisTS(self, study, repertory, POL_IC_default, qlog, POL_name):
-
-        if qlog is not None:
-            qlog.put("Export POL ICs files")
-
-        with adists_file_open(os.path.join(repertory, f"{POL_name}.INI"), "w+") as f:
-            f.write(f"*État initial pour le polluant {POL_name}\n")
-            f.write(f"{POL_IC_default.name} = {POL_IC_default.concentration} {POL_IC_default.eg} "+
-            f"{POL_IC_default.em} {POL_IC_default.ed}\n")
-
-            if len(POL_IC_default._data) != 0:
-                self._export_ICs_AdisTS_Spec(study, POL_IC_default._data, f, qlog)
-
-    def _export_ICs_AdisTS_Spec(self, study, pol_ics_spec_data, f, qlog, name="0"):
-
-        for ic_spec in pol_ics_spec_data:
-            f.write(f"{ic_spec.name} = {ic_spec.reach} {ic_spec.start_kp} {ic_spec.end_kp} " +
-                    f"{ic_spec.concentration} {ic_spec.eg} {ic_spec.em} {ic_spec.ed} {ic_spec.rate}")
-
-        return True
-
-    def _export_POL_Characteristics(self, study, pol_data, f, qlog, name="0"):
-
-        list_characteristics = ["type", "diametre", "rho", "porosity", "cdc_riv", "cdc_cas", "apd", "ac", "bc"]
-
-        if len(list_characteristics) == (len(pol_data[0])-1):
-            for l in range(len(list_characteristics)):
-                f.write(f"{list_characteristics[l]} = {pol_data[0][l]}\n")
-
-    def _export_D90(self, study, repertory, qlog=None, name="0"):
-
-        files = []
-
-        if qlog is not None:
-            qlog.put("Export D90 file")
-
-        with adists_file_open(os.path.join(repertory, f"{name}.D90"), "w+") as f:
-            files.append(f"{name}.D90")
-
-            f.write(f"*Diamètres caractéristiques du fond stable\n")
-
-            d90AdisTS = study.river.d90_adists.D90_AdisTS_List
-
-            f.write(f"{d90AdisTS[0].name} = {d90AdisTS[0].d90}\n")
-
-            self._export_d90_spec(study, d90AdisTS[0]._data, f, qlog)
-
-        return files
-
-    def _export_d90_spec(self, study, d90_spec_data, f, qlog, name="0"):
-
-        for d90_spec in d90_spec_data:
-            if (d90_spec.name is None) or (d90_spec.reach is None) or (d90_spec.start_kp is None) or \
-                (d90_spec.end_kp is None) or (d90_spec.d90 is None):
-                return
-
-            edges = study.river.enable_edges()
-
-            id_edges = list(map(lambda x: x.id, edges))
-
-            id_reach = d90_spec.reach
-
-            if id_reach not in id_edges:
-                return
-
-            f.write(f"{d90_spec.name} = {id_reach} {d90_spec.start_kp} {d90_spec.end_kp} {d90_spec.d90}\n")
-
-    def _export_DIF(self, study, repertory, qlog=None, name="0"):
-
-        files = []
-
-        if qlog is not None:
-            qlog.put("Export DIF file")
-
-        with adists_file_open(os.path.join(repertory, f"{name}.DIF"), "w+") as f:
-            files.append(f"{name}.DIF")
-
-            f.write(f"*Définition des paramètres des fonctions de calcul du\n")
-            f.write(f"*coefficient de diffusion\n")
-
-            difAdisTS = study.river.dif_adists.DIF_AdisTS_List
-
-            if difAdisTS[0].method != "generique":
-                f.write(f"defaut = {difAdisTS[0].method} {difAdisTS[0].dif }\n")
-            else:
-                f.write(f"defaut = {difAdisTS[0].method} {difAdisTS[0].dif} {difAdisTS[0].b} {difAdisTS[0].c}\n")
-
-            self._export_dif_spec(study, difAdisTS[0]._data, f, qlog)
-
-        return files
-
-    def _export_dif_spec(self, study, dif_spec_data, f, qlog, name="0"):
-
-        for dif_spec in dif_spec_data:
-            if (dif_spec.reach is None) or (dif_spec.start_kp is None) or \
-                (dif_spec.end_kp is None) or (dif_spec.dif is None) or (dif_spec.b is None) or (dif_spec.c is None):
-                return
-
-            edges = study.river.enable_edges()
-
-            id_edges = list(map(lambda x: x.id, edges))
-
-            id_reach = dif_spec.reach
-
-            if id_reach not in id_edges:
-                return
-
-            if dif_spec.method != "generique":
-                f.write(f"{dif_spec.method} = {id_reach} {dif_spec.start_kp} {dif_spec.end_kp} {dif_spec.dif}\n")
-            else:
-                f.write(f"{dif_spec.method} = {id_reach} {dif_spec.start_kp} {dif_spec.end_kp} {dif_spec.dif}" +
-                f"{dif_spec.b} {dif_spec.c}\n")
-
-    def _export_NUM(self, study, repertory, qlog=None, name="0"):
-
-        dict_names = {"init_time":"start_date",
-                      "final_time":"end_date",
-                      "timestep":"dt0",
-                      "implicitation_parameter":"theta",
-                      "timestep_screen":"dtscr",
-                      "timestep_bin":"dtbin",
-                      "timestep_csv":"dtcsv",
-                      "timestep_mage":"dtMage",
-                      "initial_concentration":"c_initiale"}
-        files = []
-
-        if qlog is not None:
-            qlog.put("Export NUM file")
-
-        with adists_file_open(os.path.join(repertory, f"{name}.NUM"), "w+") as f:
-            files.append(f"{name}.NUM")
-
-            params = study.river.get_params(self.type).parameters
-            for p in params:
-                name = p.name\
-                        .replace("all_", "")\
-                        .replace("adists_", "")
-                value = p.value
-
-                logger.debug(
-                    f"export: NUM: {name}: {value} ({p.value})"
-                )
-
-                if name != "command_line_arguments":
-                    f.write(f"{dict_names[name]} = {value}\n")
-
-            outputkps = study.river.Output_kp_adists.OutputKp_List
-
-            for outputkp in outputkps:
-                self._export_outputkp(study, outputkp, f, qlog)
-
-        return files
-
-    def _export_outputkp(self, study, outputkp, f, qlog, name="0"):
-        if (outputkp.reach is None) or (outputkp.kp is None) or (outputkp.title is None):
-            return
-
-        edges = study.river.enable_edges()
-
-        id_edges = list(map(lambda x: x.id, edges))
-
-        id_reach = outputkp.reach
-        kp = outputkp.kp
-        title = outputkp.title
-
-        if id_reach not in id_edges:
-            return
-
-        f.write(f"output = {id_reach} {kp} {title}\n")
-
-    @timer
-    def read_bin(self, study, repertory, results, qlog=None, name="0"):
-        repertory_results = os.path.join(repertory, "resultats")
-
-        files_bin_names = [el.split("/")[-1] for el in glob.glob(repertory_results+"/*.bin")]
-        print("files names resultats: ", files_bin_names)
-
-        ifilename = os.path.join(repertory_results, files_bin_names[0])
-
-        logger.info(f"read_bin: Start reading '{ifilename}' ...")
-
-        print("reading ", ifilename)
-        with open(ifilename, 'rb') as f:
-            # header
-            # first line
-            data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (start)
-            data = np.fromfile(f, dtype=np.int32, count=3)
-            ibmax = data[0]  # number of reaches
-            ismax = data[1]  # total number of cross sections
-            kbl = data[2] * -1  # block size for .BIN header
-            data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (end)
-            # second line
-            data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (start)
-            ibu = np.fromfile(f, dtype=np.int32, count=ibmax)
-            data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (end)
-            # third line
-            data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (start)
-            data = np.fromfile(f, dtype=np.int32, count=2 * ibmax)
-            is1 = np.zeros(ibmax, dtype=np.int32)
-            is2 = np.zeros(ibmax, dtype=np.int32)
-            print("nombre de biefs : ", ibmax)
-
-            logger.debug(f"read_bin: nb_reach = {ibmax}")
-            logger.debug(f"read_bin: nb_profile = {ismax}")
-
-            results.set("nb_reach", f"{ibmax}")
-            results.set("nb_profile", f"{ismax}")
-
-            reachs = []
-            iprofiles = {}
-            reach_offset = {}
-
-            for i in range(ibmax):
-                # Add results reach to reach list
-                r = results.river.add(i)
-                reachs.append(r)
-
-                is1[i] = data[2 * i] - 1 # first section of reach i (FORTRAN numbering)
-                is2[i] = data[2 * i + 1] - 1  # last section of reach i (FORTRAN numbering)
-
-                key = (is1[i], is2[i])
-                iprofiles[key] = r
-
-                reach_offset[r] = is1[i]
-
-            logger.debug(f"read_bin: iprofiles = {iprofiles}")
-
-            data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (end)
-            # fourth line
-            pk = np.zeros(ismax, dtype=np.float32)
-            for k in range(0, ismax, kbl):
-                data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (start)
-                pk[k:min(k + kbl, ismax)] = np.fromfile(f, dtype=np.float32, count=min(k + kbl, ismax) - k)
-                print("pk : ", pk)
-                data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (end)
-
-                # fifth line (useless)
-                data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (start)
-                zmin_OLD = np.fromfile(f, dtype=np.float32, count=1)[0]
-                print("zmin_OLD : ", zmin_OLD)
-                data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (end)
-                # sixth line
-                zf = np.zeros(ismax, dtype=np.float32)
-                z = np.zeros(ismax * 3, dtype=np.float32)
-                for k in range(0, ismax, kbl):
-                    data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (start)
-                    z[3 * k:3 * min(k + kbl, ismax)] = np.fromfile(f, dtype=np.float32,
-                                                                   count=3 * (min(k + kbl, ismax) - k))
-                    # z[i*3+1] and z[i*3+2] are useless
-                    data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (end)
-                zf = [z[i * 3] for i in range(ismax)]
-                print("zf : ", zf)
-                # seventh line (useless)
-                for k in range(0, ismax, kbl):
-                    data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (start)
-                    zero = np.fromfile(f, dtype=np.int32, count=ismax)
-                    print("zero : ", zero)
-                    data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (end)
-                # end header
-
-        def ip_to_r(i): return iprofiles[
-            next(
-                filter(
-                    lambda k: k[0] <= i <= k[1],
-                    iprofiles
-                )
-            )
-        ]
-
-        def ip_to_ri(r, i): return i - reach_offset[r]
-
-        path_files = map(lambda file: os.path.join(repertory_results, file), files_bin_names)
-
-        data_tmp = {}
-
-        for file_bin in path_files:
-            key_pol = file_bin.split("/")[-1][0:-4]
-            data_tmp[key_pol] = {}
-            with open(file_bin, 'rb') as f:
-                # header
-                # first line
-                data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (start)
-                data = np.fromfile(f, dtype=np.int32, count=3)
-                ibmax = data[0]  # number of reaches
-                ismax = data[1]  # total number of cross sections
-                kbl = data[2] * -1  # block size for .BIN header
-                data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (end)
-                # second line
-                data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (start)
-                ibu = np.fromfile(f, dtype=np.int32, count=ibmax)
-                data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (end)
-                # third line
-                data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (start)
-                data = np.fromfile(f, dtype=np.int32, count=2 * ibmax)
-                is1 = np.zeros(ibmax, dtype=np.int32)
-                is2 = np.zeros(ibmax, dtype=np.int32)
-                for i in range(ibmax):
-                    is1[i] = data[2 * i]  # first section of reach i (FORTRAN numbering)
-                    is2[i] = data[2 * i + 1]  # last section of reach i (FORTRAN numbering)
-                data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (end)
-                # fourth line
-                pk = np.zeros(ismax, dtype=np.float32)
-                for k in range(0, ismax, kbl):
-                    data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (start)
-                    pk[k:min(k + kbl, ismax)] = np.fromfile(f, dtype=np.float32, count=min(k + kbl, ismax) - k)
-                    data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (end)
-                # fifth line (useless)
-                data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (start)
-                zmin_OLD = np.fromfile(f, dtype=np.float32, count=1)[0]
-                data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (end)
-                # sixth line
-                zf = np.zeros(ismax, dtype=np.float32)
-                z = np.zeros(ismax * 3, dtype=np.float32)
-                for k in range(0, ismax, kbl):
-                    data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (start)
-                    z[3 * k:3 * min(k + kbl, ismax)] = np.fromfile(f, dtype=np.float32,
-                                                                   count=3 * (min(k + kbl, ismax) - k))
-                    # z[i*3+1] and z[i*3+2] are useless
-                    data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (end)
-                zf = [z[i * 3] for i in range(ismax)]
-                # seventh line (useless)
-                for k in range(0, ismax, kbl):
-                    data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (start)
-                    zero = np.fromfile(f, dtype=np.int32, count=ismax)
-                    data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (end)
-                # end header
-                # data
-                data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (start)
-                while data.size > 0:
-                    ismax = np.fromfile(f, dtype=np.int32, count=1)[0]
-                    t = np.fromfile(f, dtype=np.float64, count=1)[0]
-                    if not t in data_tmp[key_pol]:
-                        data_tmp[key_pol][t] = {}
-                    c = np.fromfile(f, dtype=np.byte, count=1)
-                    # possible values :
-                    # sediment : C, G, M, D, L, N, R
-                    # polutant : C, G, M, D
-                    phys_var = bytearray(c).decode()
-                    data_tmp[key_pol][t][phys_var] = {}
-                    real_data = np.fromfile(f, dtype=np.float32, count=ismax)
-                    data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (end)
-                    data_tmp[key_pol][t][phys_var] = real_data
-                    data = np.fromfile(f, dtype=np.int32, count=1)  # line length (bytes) (start)
-                # end data
-
-        ###print("dta tmp AAA")
-        ###print("-----------")
-        ###print(data_tmp["AAA-silt"])
-
-        pollutants_keys = list(data_tmp.keys())
-        timestamps_keys = list(data_tmp[pollutants_keys[0]].keys())
-        phys_data_names = list(data_tmp[pollutants_keys[0]][timestamps_keys[0]].keys())
-
-        ###print("pol keys: ", pollutants_keys)
-        ###print("t keys: ", timestamps_keys)
-        ###print("phys var: ", phys_data_names)
-        #print("set timestamps keys: ", set(timestamps_keys))
-        #print("isma")
-        ###print("iprofiles: ", iprofiles)
-
-        pi_tmp = []
-        reach_tmp = []
-
-        for i in range(ismax-1):
-            #print("first i: ", i)
-            reach = ip_to_r(i)
-            reach_tmp.append(reach)
-            #print("reach i:", reach)
-            #print("second i: ", i)
-            p_i = ip_to_ri(reach, i)
-            pi_tmp.append(p_i)
-
-            for t_data in timestamps_keys:
-                pol_view = []
-                for pol in pollutants_keys:
-                    #print("pol results: ", type(list(data_tmp[pol][t_data].values())))
-                    pol_view.append(tuple( list(map(lambda data_el: data_el[p_i], list(data_tmp[pol][t_data].values()))) ))
-
-                reach.set(p_i, t_data, "pols", pol_view)
-
-        ###print("pi_tmp: ", pi_tmp)
-        ###print("pol view: ", pol_view)
-        ###print("reach from i: ", reach_tmp)
-        #print("pol view: ", pol_view)
-        #print("results: ", results)
-        results.set("timestamps", set(timestamps_keys))
-        #print("------------------------set timestamps results meta data: ", set(timestamps_keys))
-
-        ###print("debug profiles for draw:")
-        ###print("------------------------")
-        ###print(data_tmp["AAA-silt"][0.0]["C"][0])
-        ###print(data_tmp["AAA-silt"][600.0]["C"][0])
-        ###print(data_tmp["AAA-silt"][1205.7208829578194]["C"][0])
-        ###print("========================")
-
-    @timer
-    def results(self, study, repertory, qlog=None, name=None):
-        self._study = study
-        if name is None:
-            name = study.name.replace(" ", "_")
-
-        results = super(AdisTSlc, self).results(study, repertory, qlog, name=name)
-
-        return results
-
-    def export_func_dict(self):
-        return [
-            self._export_NUM,
-            self._export_DIF,
-            self._export_D90,
-            self._export_POLs,
-        ]
-
-    @timer
-    def export(self, study, repertory, mage_rep, qlog=None, name="0"):
-        print("cmd solver adistslc : ", self._cmd_solver)
-        self._study = study
-        name = study.name.replace(" ", "_")
-
-        # Generate files
-        files = []
-
-        try:
-            for func in self.export_func_dict():
-                files = files + func(study, repertory, qlog, name=name)
-
-            self.export_additional_files(study, repertory, qlog, name=name)
-            self._export_REP(study, repertory, mage_rep, files, qlog, name=name)
-
-            return True
-        except Exception as e:
-            logger.error(f"Failed to export study to {self._type}")
-            logger_exception(e)
-            return False
-
-
-
-
-
-

src/Solver/Mage.py

@@ -980,7 +980,6 @@ class Mage8(Mage):
 
                 # Add profile id correspondance to reach
                 key = (i1, i2)
-                print("mage keys reachs: ", key)
                 iprofiles[key] = r
 
                 # Profile ID offset
@@ -1013,8 +1012,6 @@ class Mage8(Mage):
             ]
             def ip_to_ri(r, i): return i - reach_offset[r]
 
-            print("mage iprofiles: ", iprofiles)
-
             ts = set()
             end = False
             while not end:
@@ -1050,7 +1047,6 @@ class Mage8(Mage):
 
             logger.debug(reachs[0].profiles[0]._data)
             results.set("timestamps", ts)
-            print("set timestamps mage: ", ts)
             logger.info(f"read_bin: ... end with {len(ts)} timestamp read")
 
     @timer

src/Solver/Solvers.py

@@ -23,7 +23,6 @@ from Solver.Mage import (
     Mage7, Mage8, MageFake7,
 )
 from Solver.RubarBE import RubarBE
-from Solver.AdisTS import AdisTSlc
 
 _translate = QCoreApplication.translate
 
@@ -32,8 +31,7 @@ solver_long_name = {
     # "mage7": "Mage v7",
     "mage8": "Mage v8",
     # "mage_fake7": "Mage fake v7",
-    "rubarbe": "RubarBE",
-    "adistslc": "Adis-TS_LC",
+    # "rubarbe": "RubarBE",
 }
 
 solver_type_list = {
@@ -41,6 +39,5 @@ solver_type_list = {
     # "mage7": Mage7,
     "mage8": Mage8,
     # "mage_fake7": MageFake7,
-    "rubarbe": RubarBE,
-    "adistslc": AdisTSlc,
+    # "rubarbe": RubarBE,
 }

src/Solver/__init__.py

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023-2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-

src/View/About/__init__.py

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023-2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-

src/View/AdditionalFiles/Edit/__init__.py

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023-2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-

src/View/AdditionalFiles/__init__.py

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023-2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-

src/View/BoundaryCondition/Edit/__init__.py

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023-2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-

src/View/BoundaryCondition/__init__.py

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023-2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-

src/View/BoundaryCondition/translate.py

@@ -48,7 +48,7 @@ class BCTranslate(MainTranslate):
 
         self._sub_dict["long_types"] = {
             "ND": self._dict["not_defined"],
-            "PC": _translate("BoundaryCondition", "Ponctual contribution"),
+            "PC": _translate("BoundaryCondition", "Point sources"),
             "TZ": _translate("BoundaryCondition", "Z(t)"),
             "TD": _translate("BoundaryCondition", "Q(t)"),
             "ZD": _translate("BoundaryCondition", "Q(Z)"),

src/View/BoundaryConditionsAdisTS/Edit/Plot.py

@@ -1,105 +0,0 @@
-# Plot.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-import logging
-
-from datetime import datetime
-
-from tools import timer, trace
-from View.Tools.PamhyrPlot import PamhyrPlot
-
-from PyQt5.QtCore import (
-    QCoreApplication
-)
-
-_translate = QCoreApplication.translate
-
-logger = logging.getLogger()
-
-
-class Plot(PamhyrPlot):
-    def __init__(self, mode="time", data=None,
-                 trad=None, canvas=None, toolbar=None,
-                 parent=None):
-        super(Plot, self).__init__(
-            canvas=canvas,
-            trad=trad,
-            data=data,
-            toolbar=toolbar,
-            parent=parent
-        )
-
-        self._table_headers = self._trad.get_dict("table_headers")
-
-        header = self.data.header
-
-        self.label_x = self._table_headers[header[0]]
-        self.label_y = self._table_headers[header[1]]
-
-        self._mode = mode
-        self._isometric_axis = False
-
-        self._auto_relim_update = True
-        self._autoscale_update = True
-
-    def custom_ticks(self):
-        if self.data.header[0] != "time":
-            return
-
-        self.set_ticks_time_formater()
-
-    @timer
-    def draw(self):
-        self.init_axes()
-
-        if len(self.data) == 0:
-            self._init = False
-            return
-
-        self.draw_data()
-        self.custom_ticks()
-
-        self.idle()
-        self._init = True
-
-    def draw_data(self):
-        # Plot data
-        x = list(map(lambda v: v[0], self.data.data))
-        y = list(map(lambda v: v[1], self.data.data))
-
-        self._line, = self.canvas.axes.plot(
-            x, y,
-            color=self.color_plot,
-            **self.plot_default_kargs
-        )
-
-    @timer
-    def update(self, ind=None):
-        if not self._init:
-            self.draw()
-            return
-
-        self.update_data()
-
-        self.update_idle()
-
-    def update_data(self):
-        x = list(map(lambda v: v[0], self.data.data))
-        y = list(map(lambda v: v[1], self.data.data))
-
-        self._line.set_data(x, y)

src/View/BoundaryConditionsAdisTS/Edit/Table.py

@@ -1,121 +0,0 @@
-# Table.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-import logging
-import traceback
-
-from datetime import date, time, datetime, timedelta
-
-from tools import (
-    trace, timer,
-    timestamp_to_old_pamhyr_date,
-    old_pamhyr_date_to_timestamp
-)
-
-from View.Tools.PamhyrTable import PamhyrTableModel
-
-from PyQt5.QtCore import (
-    Qt, QVariant, QAbstractTableModel,
-    QCoreApplication, QModelIndex, pyqtSlot,
-    QRect, QTime, QDateTime,
-)
-
-from PyQt5.QtWidgets import (
-    QTableView, QAbstractItemView, QSpinBox,
-    QTimeEdit, QDateTimeEdit, QItemDelegate,
-)
-
-from View.BoundaryConditionsAdisTS.Edit.UndoCommand import (
-    AddCommand, DelCommand, SetDataCommand,
-)
-
-_translate = QCoreApplication.translate
-
-logger = logging.getLogger()
-
-
-class TableModel(PamhyrTableModel):
-    def data(self, index, role):
-        if role == Qt.TextAlignmentRole:
-            return Qt.AlignHCenter | Qt.AlignVCenter
-
-        if role != Qt.ItemDataRole.DisplayRole:
-            return QVariant()
-
-        row = index.row()
-        column = index.column()
-
-        value = QVariant()
-
-        if 0 <= column < 2:
-            v = self._data._data[row][column]
-            if self._data._types[column] == float:
-                value = f"{v:.4f}"
-            elif self._data.header[column] == "time":
-                if self._opt_data == "time":
-                    value = timestamp_to_old_pamhyr_date(int(v))
-                else:
-                    value = str(datetime.fromtimestamp(v))
-            else:
-                value = f"{v}"
-
-        return value
-
-    def setData(self, index, value, role=Qt.EditRole):
-        if not index.isValid() or role != Qt.EditRole:
-            return False
-
-        row = index.row()
-        column = index.column()
-
-        try:
-            self._undo.push(
-                SetDataCommand(
-                    self._data, row, column, value
-                )
-            )
-        except Exception as e:
-            logger.info(e)
-            logger.debug(traceback.format_exc())
-
-        self.dataChanged.emit(index, index)
-        return True
-
-    def add(self, row, parent=QModelIndex()):
-        self.beginInsertRows(parent, row, row - 1)
-
-        self._undo.push(
-            AddCommand(
-                self._data, row
-            )
-        )
-
-        self.endInsertRows()
-        self.layoutChanged.emit()
-
-    def delete(self, rows, parent=QModelIndex()):
-        self.beginRemoveRows(parent, rows[0], rows[-1])
-
-        self._undo.push(
-            DelCommand(
-                self._data, rows
-            )
-        )
-
-        self.endRemoveRows()
-

src/View/BoundaryConditionsAdisTS/Edit/UndoCommand.py

@@ -1,95 +0,0 @@
-# UndoCommand.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-import logging
-
-from copy import deepcopy
-from tools import trace, timer
-
-from PyQt5.QtWidgets import (
-    QMessageBox, QUndoCommand, QUndoStack,
-)
-
-from Model.BoundaryConditionsAdisTS.BoundaryConditionAdisTS import BoundaryConditionAdisTS
-
-logger = logging.getLogger()
-
-
-class SetDataCommand(QUndoCommand):
-    def __init__(self, data, index, column, new_value):
-        QUndoCommand.__init__(self)
-
-        self._data = data
-        self._index = index
-        self._column = column
-        self._old = self._data._data[self._index][self._column]
-        _type = self._data._types[self._column]
-        self._new = _type(new_value)
-
-    def undo(self):
-        if self._column == 0:
-            self._data._data[self._index] = (self._old,self._data._data[self._index][1])
-        else:
-            self._data._data[self._index] = (self._data._data[self._index][0], self._old)
-
-    def redo(self):
-        if self._column == 0:
-            self._data._data[self._index] = (self._new,self._data._data[self._index][1])
-        else:
-            self._data._data[self._index] = (self._data._data[self._index][0], self._new)
-
-class AddCommand(QUndoCommand):
-    def __init__(self, data, index):
-        QUndoCommand.__init__(self)
-
-        self._data = data
-        self._index = index
-        self._new = None
-
-    def undo(self):
-        del self._data._data[self._index]
-
-    def redo(self):
-        if self._new is None:
-            self._new = self._data._data.insert(self._index, (self._data._types[0](0), self._data._types[1](0.0)))
-        else:
-            self._data._data.insert(self._index, self._new)
-
-class DelCommand(QUndoCommand):
-    def __init__(self, data, rows):
-        QUndoCommand.__init__(self)
-
-        self._data = data
-        self._rows = rows
-
-        self._bc = []
-        for row in rows:
-            self._bc.append((row, self._data._data[row]))
-        self._bc.sort()
-
-    def undo(self):
-        for row, el in self._bc:
-            self._data._data.insert(row, el)
-
-    def redo(self):
-        for row in self._rows:
-            del self._data._data[row]
-
-
-
-

src/View/BoundaryConditionsAdisTS/Edit/Window.py

@@ -1,206 +0,0 @@
- # Window.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-import logging
-
-from tools import timer, trace
-
-from View.Tools.PamhyrWindow import PamhyrWindow
-from View.Tools.PamhyrWidget import PamhyrWidget
-from View.Tools.PamhyrDelegate import PamhyrExTimeDelegate
-
-from PyQt5.QtGui import (
-    QKeySequence,
-)
-
-from PyQt5 import QtCore
-from PyQt5.QtCore import (
-    Qt, QVariant, QAbstractTableModel, QCoreApplication,
-    pyqtSlot, pyqtSignal,
-)
-
-from PyQt5.QtWidgets import (
-    QDialogButtonBox, QPushButton, QLineEdit,
-    QFileDialog, QTableView, QAbstractItemView,
-    QUndoStack, QShortcut, QAction, QItemDelegate,
-    QHeaderView, QDoubleSpinBox, QVBoxLayout,
-)
-
-from View.Tools.Plot.PamhyrCanvas import MplCanvas
-from View.Tools.Plot.PamhyrToolbar import PamhyrPlotToolbar
-
-from View.BoundaryConditionsAdisTS.Edit.translate import BCETranslate
-from View.BoundaryConditionsAdisTS.Edit.Table import TableModel
-from View.BoundaryConditionsAdisTS.Edit.Plot import Plot
-
-_translate = QCoreApplication.translate
-
-logger = logging.getLogger()
-
-class EditBoundaryConditionWindow(PamhyrWindow):
-    _pamhyr_ui = "EditBoundaryConditionsAdisTS"
-    _pamhyr_name = "Edit Boundary Conditions AdisTS"
-
-    def __init__(self, data=None, study=None, config=None, parent=None):
-        self._data = data
-        trad = BCETranslate()
-
-        name = trad[self._pamhyr_name]
-
-        super(EditBoundaryConditionWindow, self).__init__(
-            title=name,
-            study=study,
-            config=config,
-            trad=trad,
-            parent=parent
-        )
-
-        if self._data is not None:
-            n = self._data.node
-            node_name = next(filter(lambda x: x.id == n, self._study.river._nodes)).name
-            name += (
-                f" - {study.name} " +
-                f"({node_name})"
-            )
-
-        self._hash_data.append(data)
-
-        self.setup_table()
-        self.setup_plot()
-        self.setup_connections()
-
-    def setup_table(self):
-        if self._data.type == "Concentration":
-            self._data.header = ["time", "concentration"]
-        else:
-            self._data.header = ["time", "rate"]
-
-        headers = {}
-        table_headers = self._trad.get_dict("table_headers")
-        for h in self._data.header:
-            headers[h] = table_headers[h]
-
-        self._delegate_time = PamhyrExTimeDelegate(
-            data=self._data,
-            mode=self._study.time_system,
-            parent=self
-        )
-
-        table = self.find(QTableView, "tableView")
-        self._table = TableModel(
-            table_view=table,
-            table_headers=headers,
-            editable_headers=self._data.header,
-            delegates={
-                # "time": self._delegate_time,
-            },
-            data=self._data,
-            undo=self._undo_stack,
-            opt_data=self._study.time_system
-        )
-
-        table.setModel(self._table)
-        table.setSelectionBehavior(QAbstractItemView.SelectRows)
-        table.horizontalHeader().setSectionResizeMode(QHeaderView.Stretch)
-        table.setAlternatingRowColors(True)
-
-    def setup_plot(self):
-        self.canvas = MplCanvas(width=5, height=4, dpi=100)
-        self.canvas.setObjectName("canvas")
-        self.toolbar = PamhyrPlotToolbar(
-            self.canvas, self
-        )
-        self.verticalLayout.addWidget(self.toolbar)
-        self.verticalLayout.addWidget(self.canvas)
-
-        self.plot = Plot(
-            canvas=self.canvas,
-            data=self._data,
-            mode=self._study.time_system,
-            trad=self._trad,
-            toolbar=self.toolbar,
-        )
-        self.plot.draw()
-
-    def setup_connections(self):
-        self.find(QAction, "action_add").triggered.connect(self.add)
-        self.find(QAction, "action_del").triggered.connect(self.delete)
-
-        self._table.dataChanged.connect(self.update)
-
-    def update(self):
-        self.plot.update()
-
-    def index_selected_row(self):
-        table = self.find(QTableView, "tableView")
-        return table.selectionModel()\
-                    .selectedRows()[0]\
-                    .row()
-
-    def index_selected_rows(self):
-        table = self.find(QTableView, "tableView")
-        return list(
-            # Delete duplicate
-            set(
-                map(
-                    lambda i: i.row(),
-                    table.selectedIndexes()
-                )
-            )
-        )
-
-    def add(self):
-        rows = self.index_selected_rows()
-        if len(self._data) == 0 or len(rows) == 0:
-            self._table.add(0)
-        else:
-            self._table.add(rows[0])
-
-        self.plot.update()
-
-    def delete(self):
-        rows = self.index_selected_rows()
-        if len(rows) == 0:
-            return
-
-        self._table.delete(rows)
-        self.plot.update()
-
-    def sort(self):
-        self._table.sort(False)
-        self.plot.update()
-
-    def _copy(self):
-        rows = self.index_selected_rows()
-
-        table = []
-        table.append(self._data.header)
-
-        data = self._data.data
-        for row in rows:
-            table.append(list(data[row]))
-
-        self.copyTableIntoClipboard(table)
-
-    def _undo(self):
-        self._table.undo()
-        self.plot.update()
-
-    def _redo(self):
-        self._table.redo()
-        self.plot.update()

src/View/BoundaryConditionsAdisTS/Edit/translate.py

@@ -1,41 +0,0 @@
-# translate.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-from PyQt5.QtCore import QCoreApplication
-
-from View.Translate import MainTranslate
-
-from View.BoundaryCondition.translate import BCTranslate
-
-_translate = QCoreApplication.translate
-
-
-class BCETranslate(BCTranslate):
-    def __init__(self):
-        super(BCETranslate, self).__init__()
-
-        self._dict["Edit Boundary Conditions AdisTS"] = _translate(
-            "BoundaryConditionAdisTS", "Edit boundary conditions AdisTS"
-        )
-
-        self._sub_dict["table_headers"] = {
-            "time": self._dict["time"],
-            "date": self._dict["date"],
-            "rate": _translate("BoundaryConditionAdisTS", "Rate"),
-            "concentration": _translate("BoundaryConditionAdisTS", "Concentration"),
-        }

src/View/BoundaryConditionsAdisTS/Table.py

@@ -1,206 +0,0 @@
-# Table.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-import logging
-import traceback
-
-from tools import trace, timer
-
-from PyQt5.QtCore import (
-    Qt, QVariant, QAbstractTableModel,
-    QCoreApplication, QModelIndex, pyqtSlot,
-    QRect,
-)
-
-from PyQt5.QtWidgets import (
-    QDialogButtonBox, QPushButton, QLineEdit,
-    QFileDialog, QTableView, QAbstractItemView,
-    QUndoStack, QShortcut, QAction, QItemDelegate,
-    QComboBox,
-)
-
-from Model.BoundaryCondition.BoundaryConditionTypes import (
-    NotDefined, PonctualContribution,
-    TimeOverZ, TimeOverDischarge, ZOverDischarge
-)
-
-from View.Tools.PamhyrTable import PamhyrTableModel
-
-from View.BoundaryConditionsAdisTS.UndoCommand import (
-    SetNodeCommand, SetTypeCommand,
-    AddCommand, DelCommand,
-)
-from View.BoundaryCondition.translate import BC_types
-
-logger = logging.getLogger()
-
-_translate = QCoreApplication.translate
-
-
-class ComboBoxDelegate(QItemDelegate):
-    def __init__(self, data=None, mode="type", tab="",
-                 trad=None, parent=None):
-        super(ComboBoxDelegate, self).__init__(parent)
-
-        self._data = data
-        self._mode = mode
-        self._tab = tab
-        self._trad = trad
-
-        self._long_types = {}
-        if self._trad is not None:
-            self._long_types = self._trad.get_dict("long_types")
-
-    def createEditor(self, parent, option, index):
-        self.editor = QComboBox(parent)
-
-        if self._mode == "type":
-            lst = [self._trad["not_associated"], "Concentration", "Rate"]
-            self.editor.addItems(
-                lst
-            )
-        else:
-            self.editor.addItems(
-                [self._trad["not_associated"]] +
-                self._data.nodes_names()
-            )
-
-        self.editor.setCurrentText(index.data(Qt.DisplayRole))
-        return self.editor
-
-    def setEditorData(self, editor, index):
-        value = index.data(Qt.DisplayRole)
-        self.editor.currentTextChanged.connect(self.currentItemChanged)
-
-    def setModelData(self, editor, model, index):
-        text = str(editor.currentText())
-        model.setData(index, text)
-        editor.close()
-        editor.deleteLater()
-
-    def updateEditorGeometry(self, editor, option, index):
-        r = QRect(option.rect)
-        if self.editor.windowFlags() & Qt.Popup:
-            if editor.parent() is not None:
-                r.setTopLeft(self.editor.parent().mapToGlobal(r.topLeft()))
-        editor.setGeometry(r)
-
-    @pyqtSlot()
-    def currentItemChanged(self):
-        self.commitData.emit(self.sender())
-
-
-class TableModel(PamhyrTableModel):
-    def __init__(self, pollutant=None, bc_list =None, trad=None, **kwargs):
-        self._trad = trad
-        self._bc_list = bc_list
-        self._pollutant = pollutant
-
-        super(TableModel, self).__init__(trad=trad, **kwargs)
-
-    def _setup_lst(self):
-        self._lst = self._bc_list.lst
-
-    def rowCount(self, parent):
-        return len(self._lst)
-
-    def data(self, index, role):
-        if len(self._lst) != 0:
-            data = list(filter(lambda x: x.pollutant == self._pollutant,
-                                     self._lst))
-        else:
-            data = []
-
-        if role != Qt.ItemDataRole.DisplayRole:
-            return QVariant()
-
-        row = index.row()
-        column = index.column()
-
-        if self._headers[column] == "type":
-            n = data[row].type
-            if n is None or n == "":
-                return self._trad["not_associated"]
-            return n
-        elif self._headers[column] == "node":
-            n = data[row].node
-            if n is None:
-                return self._trad["not_associated"]
-            return next(filter(lambda x: x.id == n, self._data._nodes)).name
-
-        return QVariant()
-
-    def setData(self, index, value, role=Qt.EditRole):
-        if not index.isValid() or role != Qt.EditRole:
-            return False
-
-        row = index.row()
-        column = index.column()
-
-        try:
-            if self._headers[column] == "type":
-                self._undo.push(
-                    SetTypeCommand(
-                        self._lst, row, value
-                    )
-                )
-            elif self._headers[column] == "node":
-                self._undo.push(
-                    SetNodeCommand(
-                        self._lst, row, self._data.node(value)
-                    )
-                )
-                print(value, self._data.node(value).id)
-        except Exception as e:
-            logger.info(e)
-            logger.debug(traceback.format_exc())
-
-        self.dataChanged.emit(index, index)
-        return True
-
-    def add(self, row, parent=QModelIndex()):
-        self.beginInsertRows(parent, row, row - 1)
-
-        self._undo.push(
-            AddCommand(
-                self._pollutant, self._bc_list, self._lst, row
-            )
-        )
-
-        self.endInsertRows()
-        self.layoutChanged.emit()
-
-    def delete(self, rows, parent=QModelIndex()):
-        self.beginRemoveRows(parent, rows[0], rows[-1])
-
-        self._undo.push(
-            DelCommand(
-                self._lst, rows
-            )
-        )
-
-        self.endRemoveRows()
-        self.layoutChanged.emit()
-
-    def undo(self):
-        self._undo.undo()
-        self.layoutChanged.emit()
-
-    def redo(self):
-        self._undo.redo()
-        self.layoutChanged.emit()

src/View/BoundaryConditionsAdisTS/UndoCommand.py

@@ -1,99 +0,0 @@
-# UndoCommand.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-from copy import deepcopy
-from tools import trace, timer
-
-from PyQt5.QtWidgets import (
-    QMessageBox, QUndoCommand, QUndoStack,
-)
-
-from Model.BoundaryConditionsAdisTS.BoundaryConditionAdisTS import BoundaryConditionAdisTS
-from Model.BoundaryConditionsAdisTS.BoundaryConditionsAdisTSList import BoundaryConditionsAdisTSList
-
-class SetNodeCommand(QUndoCommand):
-    def __init__(self, bcs, index, node):
-        QUndoCommand.__init__(self)
-
-        self._bcs = bcs
-        self._index = index
-        self._old = self._bcs[self._index].node
-        self._new = node.id
-
-    def undo(self):
-        self._bcs[self._index].node = self._old
-
-    def redo(self):
-        self._bcs[self._index].node = self._new
-
-class SetTypeCommand(QUndoCommand):
-    def __init__(self, bcs, index, _type):
-        QUndoCommand.__init__(self)
-
-        self._bcs = bcs
-        self._index = index
-        self._type = _type
-        self._old = self._bcs[self._index].type
-        self._new = self._type
-
-    def undo(self):
-        self._bcs[self._index].type = self._old
-
-    def redo(self):
-        self._bcs[self._index].type = self._new
-
-class AddCommand(QUndoCommand):
-    def __init__(self, pollutant, bcs_list, bcs, index):
-        QUndoCommand.__init__(self)
-
-        self._bcs = bcs
-        self._bc_list = bcs_list
-        self._pollutant = pollutant
-        self._index = index
-        self._new = None
-
-    def undo(self):
-        del self._bcs[self._index]
-
-    def redo(self):
-        if self._new is None:
-            self._new = self._bc_list.new(self._index, self._pollutant)
-        else:
-            self._bcs.insert(self._index, self._new)
-
-
-class DelCommand(QUndoCommand):
-    def __init__(self, bcs, rows):
-        QUndoCommand.__init__(self)
-
-        self._bcs = bcs
-        self._rows = rows
-
-        self._bc = []
-        for row in rows:
-            self._bc.append((row, self._bcs[row]))
-        self._bc.sort()
-
-    def undo(self):
-        for row, el in self._bc:
-            self._bcs.insert(row, el)
-
-    def redo(self):
-        for row in self._rows:
-            del self._bcs[row]
-

src/View/BoundaryConditionsAdisTS/Window.py

@@ -1,195 +0,0 @@
-# Window.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-import logging
-
-from tools import trace, timer, logger_exception
-
-from View.Tools.PamhyrWindow import PamhyrWindow
-
-from PyQt5.QtGui import (
-    QKeySequence,
-)
-
-from PyQt5.QtCore import (
-    Qt, QVariant, QAbstractTableModel,
-    QCoreApplication, QModelIndex, pyqtSlot,
-    QRect,
-)
-
-from PyQt5.QtWidgets import (
-    QDialogButtonBox, QPushButton, QLineEdit,
-    QFileDialog, QTableView, QAbstractItemView,
-    QUndoStack, QShortcut, QAction, QItemDelegate,
-    QComboBox, QVBoxLayout, QHeaderView, QTabWidget,
-    QWidget,
-)
-
-from View.BoundaryConditionsAdisTS.Table import (
-    TableModel, ComboBoxDelegate
-)
-
-from View.Network.GraphWidget import GraphWidget
-from View.BoundaryConditionsAdisTS.translate import BCAdisTSTranslate
-from View.BoundaryConditionsAdisTS.Edit.Window import EditBoundaryConditionWindow
-
-_translate = QCoreApplication.translate
-
-logger = logging.getLogger()
-
-
-class BoundaryConditionAdisTSWindow(PamhyrWindow):
-    _pamhyr_ui = "BoundaryConditionsAdisTS"
-    _pamhyr_name = "Boundary conditions AdisTS"
-
-    def __init__(self, pollutant=None, study=None, config=None, parent=None):
-        trad = BCAdisTSTranslate()
-        name = (
-            trad[self._pamhyr_name] +
-            " - " + study.name
-        )
-
-        self._pollutant = pollutant
-
-        super(BoundaryConditionAdisTSWindow, self).__init__(
-            title=name,
-            study=study,
-            config=config,
-            trad=trad,
-            parent=parent
-        )
-
-        self._bcs = self._study.river.boundary_conditions_adists
-
-        self.setup_table()
-        self.setup_graph()
-        self.setup_connections()
-
-        self.ui.setWindowTitle(self._title)
-
-    def setup_table(self):
-        self._delegate_type = ComboBoxDelegate(
-            trad=self._trad,
-            data=self._study.river,
-            mode="type",
-            parent=self
-        )
-        self._delegate_node = ComboBoxDelegate(
-            trad=self._trad,
-            data=self._study.river,
-            mode="node",
-            parent=self
-        )
-
-        table = self.find(QTableView, f"tableView")
-        self._table = TableModel(
-            table_view=table,
-            table_headers=self._trad.get_dict("table_headers"),
-            editable_headers=["type", "node"],
-            delegates={
-                "type": self._delegate_type,
-                "node": self._delegate_node,
-            },
-            trad=self._trad,
-            bc_list = self._study.river.boundary_conditions_adists,
-            undo=self._undo_stack,
-            pollutant=self._pollutant,
-            data=self._study.river
-        )
-        table.setModel(self._table)
-        table.setSelectionBehavior(QAbstractItemView.SelectRows)
-        table.horizontalHeader().setSectionResizeMode(QHeaderView.Stretch)
-        table.setAlternatingRowColors(True)
-
-    def setup_graph(self):
-        self.graph_widget = GraphWidget(
-            self._study.river,
-            min_size=None, size=(200, 200),
-            only_display=True,
-            parent=self
-        )
-        self.graph_layout = self.find(QVBoxLayout, "verticalLayout")
-        self.graph_layout.addWidget(self.graph_widget)
-
-    def setup_connections(self):
-        self.find(QAction, "action_add").triggered.connect(self.add)
-        self.find(QAction, "action_del").triggered.connect(self.delete)
-        self.find(QAction, "action_edit").triggered.connect(self.edit)
-
-    def index_selected_row(self):
-        tab = "liquid"
-        table = self.find(QTableView, f"tableView_{tab}")
-        return table.selectionModel()\
-                    .selectedRows()[0]\
-                    .row()
-
-    def index_selected_rows(self):
-        table = self.find(QTableView, f"tableView")
-        return list(
-            # Delete duplicate
-            set(
-                map(
-                    lambda i: i.row(),
-                    table.selectedIndexes()
-                )
-            )
-        )
-
-    def add(self):
-        rows = self.index_selected_rows()
-        if len(self._bcs) == 0 or len(rows) == 0:
-            self._table.add(0)
-        else:
-            self._table.add(rows[0])
-
-    def delete(self):
-        rows = self.index_selected_rows()
-        if len(rows) == 0:
-            return
-
-        self._table.delete(rows)
-
-    def _copy(self):
-        logger.info("TODO: copy")
-
-    def _paste(self):
-        logger.info("TODO: paste")
-
-    def _undo(self):
-        self._table.undo()
-
-    def _redo(self):
-        self._table.redo()
-
-    def edit(self):
-        rows = self.index_selected_rows()
-        for row in rows:
-            data = self._bcs.lst[row]
-
-            if self.sub_window_exists(
-                EditBoundaryConditionWindow,
-                data=[self._study, None, data]
-            ):
-                continue
-
-            win = EditBoundaryConditionWindow(
-                data=data,
-                study=self._study,
-                parent=self
-            )
-            win.show()

src/View/CheckList/WindowAdisTS.py

@@ -1,200 +0,0 @@
-# WindowAdisTS.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-from tools import trace, timer
-
-from View.Tools.PamhyrWindow import PamhyrWindow
-
-from PyQt5.QtGui import (
-    QKeySequence,
-)
-
-from PyQt5.QtCore import (
-    Qt, QVariant, QAbstractTableModel,
-    QCoreApplication, QModelIndex, QRect, QThread,
-    pyqtSlot, pyqtSignal,
-)
-
-from PyQt5.QtWidgets import (
-    QDialogButtonBox, QPushButton, QLineEdit,
-    QFileDialog, QTableView, QAbstractItemView,
-    QUndoStack, QShortcut, QAction, QItemDelegate,
-    QComboBox, QVBoxLayout, QHeaderView, QTabWidget,
-    QProgressBar, QLabel,
-)
-
-from View.CheckList.Table import TableModel
-from View.CheckList.Worker import Worker
-from View.CheckList.Translate import CheckListTranslate
-
-_translate = QCoreApplication.translate
-
-
-class CheckListWindowAdisTS(PamhyrWindow):
-    _pamhyr_ui = "CheckList"
-    _pamhyr_name = "Check list"
-
-    signalStatus = pyqtSignal(str)
-
-    def __init__(self, autorun: bool = True,
-                 study=None, config=None,
-                 solver=None, parent=None, mage_rep=None):
-        trad = CheckListTranslate()
-
-        self._autorun = autorun
-        self._solver = solver
-        self._mage_rep = mage_rep
-
-        name = trad[self._pamhyr_name] + " - " + study.name
-
-        super(CheckListWindowAdisTS, self).__init__(
-            title=name,
-            study=study,
-            config=config,
-            trad=trad,
-            options=[],
-            parent=parent
-        )
-
-        # Add solver to hash computation data
-        self._hash_data.append(self._solver)
-
-        self._checker_list = (
-            self._study.checkers() +
-            self._solver.checkers()
-        )
-
-        self.setup_table()
-        self.setup_progress_bar()
-        self.setup_connections()
-        self.setup_thread()
-        self.setup_statusbar()
-
-    def setup_table(self):
-        table = self.find(QTableView, f"tableView")
-        self._table = TableModel(
-            table_view=table,
-            table_headers=self._trad.get_dict("table_headers"),
-            data=self._checker_list,
-        )
-
-    def setup_progress_bar(self):
-        self._progress = self.find(QProgressBar, f"progressBar")
-        self._p = 0             # Progress current step
-
-        self._progress.setRange(0, len(self._checker_list))
-        self._progress.setValue(self._p)
-
-    def setup_connections(self):
-        self.find(QPushButton, "pushButton_ok").clicked.connect(self.accept)
-        self.find(QPushButton, "pushButton_retry").clicked.connect(self.retry)
-        self.find(QPushButton, "pushButton_cancel")\
-            .clicked.connect(self.reject)
-
-    def setup_thread(self):
-        self._worker = Worker(self._study, self._checker_list)
-        self._worker_thread = QThread()
-        self._worker.moveToThread(self._worker_thread)
-
-        # Connect any worker signals
-        self._worker.signalStatus.connect(self.update)
-        self._worker_thread.started.connect(self._worker.process)
-
-        self._worker_thread.start()
-
-    def retry(self):
-        self._worker_thread.terminate()
-        self._worker_thread.wait()
-
-        self.find(QPushButton, "pushButton_retry").setEnabled(False)
-        self.find(QPushButton, "pushButton_ok").setEnabled(False)
-
-        self.setup_thread()
-
-    def _compute_status(self):
-        ok = len(list(filter(lambda c: c.is_ok(), self._checker_list)))
-        warning = len(
-            list(filter(lambda c: c.is_warning(), self._checker_list)))
-        error = len(list(filter(lambda c: c.is_error(), self._checker_list)))
-
-        return ok, warning, error
-
-    def _compute_status_label(self):
-        ok, warning, error = self._compute_status()
-        return (f"<font color=\"Green\">Ok: {ok} </font> |" +
-                f"<font color=\"Orange\">Warning: {warning} </font> |" +
-                f"<font color=\"Red\">Error: {error}</font>")
-
-    def setup_statusbar(self):
-        txt = self._compute_status_label()
-        self._status_label = QLabel(txt)
-        self.statusbar.addPermanentWidget(self._status_label)
-
-    def update_statusbar(self):
-        txt = self._compute_status_label()
-        self._status_label.setText(txt)
-
-    def progress(self):
-        self._p += 1
-        self._progress.setValue(self._p)
-        self._table.update()
-
-    def start_compute(self):
-        self._p = 0
-        self._progress.setValue(self._p)
-
-    def info_compute(self, str):
-        self.statusbar.showMessage(str, 3000)
-
-    def end_compute(self):
-        self._table.layoutChanged.emit()
-        self.find(QPushButton, "pushButton_retry").setEnabled(True)
-
-        errors = any(filter(lambda c: c.is_error(), self._checker_list))
-        if not errors:
-            self.find(QPushButton, "pushButton_ok").setEnabled(True)
-            if self._autorun:
-                self._parent.solver_log_adists(self._solver, self._mage_rep)
-                self.end()
-
-        self.update_statusbar()
-
-    def update(self, key: str):
-        if key == "start":
-            self.start_compute()
-            self.info_compute("Starting ...")
-        elif key == "end":
-            self.info_compute("Finish")
-            self.end_compute()
-        elif key == "progress":
-            self.progress()
-        else:
-            self.info_compute(key)
-
-        self.update_statusbar()
-
-    def end(self):
-        # self._worker.join()b
-        self.close()
-
-    def reject(self):
-        self.end()
-
-    def accept(self):
-        self._parent.solver_log_adists(self._solver, self._mage_rep)
-        # self.end()

src/View/CheckList/Worker.py

@@ -46,7 +46,7 @@ class Worker(QObject):
             self.signalStatus.emit(checker.name)
 
             # Run checker
-            checker._run(self._study)
+            checker.run(self._study)
 
             self.signalStatus.emit("progress")
 

src/View/CheckList/__init__.py

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023-2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-

src/View/Configure/Solver/__init__.py

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023-2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-

src/View/Configure/__init__.py

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023-2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-

src/View/D90AdisTS/Table.py

@@ -1,217 +0,0 @@
-# Table.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-import logging
-import traceback
-from tools import trace, timer
-
-from PyQt5.QtCore import (
-    Qt, QVariant, QAbstractTableModel,
-    QCoreApplication, QModelIndex, pyqtSlot,
-    QRect,
-)
-
-from PyQt5.QtWidgets import (
-    QDialogButtonBox, QPushButton, QLineEdit,
-    QFileDialog, QTableView, QAbstractItemView,
-    QUndoStack, QShortcut, QAction, QItemDelegate,
-    QComboBox,
-)
-
-from View.Tools.PamhyrTable import PamhyrTableModel
-
-from View.D90AdisTS.UndoCommand import (
-    SetCommand, AddCommand, SetCommandSpec,
-    DelCommand,
-)
-
-logger = logging.getLogger()
-
-_translate = QCoreApplication.translate
-
-
-class ComboBoxDelegate(QItemDelegate):
-    def __init__(self, data=None, ic_spec_lst=None, trad=None, parent=None, mode="reaches"):
-        super(ComboBoxDelegate, self).__init__(parent)
-
-        self._data = data
-        self._mode = mode
-        self._trad = trad
-        self._ic_spec_lst = ic_spec_lst
-
-    def createEditor(self, parent, option, index):
-        self.editor = QComboBox(parent)
-
-        val = []
-        if self._mode == "kp":
-            reach_id = self._ic_spec_lst[index.row()].reach
-
-            reach = next(filter(lambda edge: edge.id == reach_id, self._data.edges()))
-
-            if reach_id is not None:
-                val = list(
-                    map(
-                        lambda kp: str(kp), reach.reach.get_kp()
-                    )
-                )
-        else:
-            val = list(
-                map(
-                    lambda n: n.name, self._data.edges()
-                )
-            )
-
-        self.editor.addItems(
-            [self._trad['not_associated']] +
-            val
-        )
-
-        self.editor.setCurrentText(str(index.data(Qt.DisplayRole)))
-        return self.editor
-
-    def setEditorData(self, editor, index):
-        value = index.data(Qt.DisplayRole)
-        self.editor.currentTextChanged.connect(self.currentItemChanged)
-
-    def setModelData(self, editor, model, index):
-        text = str(editor.currentText())
-        model.setData(index, text)
-        editor.close()
-        editor.deleteLater()
-
-    def updateEditorGeometry(self, editor, option, index):
-        r = QRect(option.rect)
-        if self.editor.windowFlags() & Qt.Popup:
-            if editor.parent() is not None:
-                r.setTopLeft(self.editor.parent().mapToGlobal(r.topLeft()))
-        editor.setGeometry(r)
-
-    @pyqtSlot()
-    def currentItemChanged(self):
-        self.commitData.emit(self.sender())
-
-
-class D90TableModel(PamhyrTableModel):
-    def __init__(self, river=None, data=None, **kwargs):
-        self._river = river
-
-        super(D90TableModel, self).__init__(data=data, **kwargs)
-
-        self._data = data
-
-    def _setup_lst(self):
-        self._lst = self._data._data
-
-    def rowCount(self, parent):
-        return len(self._lst)
-
-    def data(self, index, role):
-        if role != Qt.ItemDataRole.DisplayRole:
-            return QVariant()
-
-        row = index.row()
-        column = index.column()
-
-        if self._headers[column] is "name":
-            n = self._lst[row].name
-            if n is None or n == "":
-                return self._trad['not_associated']
-            return n
-        elif self._headers[column] is "reach":
-            n = self._lst[row].reach
-            if n is None:
-                return self._trad['not_associated']
-            return next(filter(lambda edge: edge.id == n, self._river.edges())).name
-        elif self._headers[column] is "start_kp":
-            n = self._lst[row].start_kp
-            if n is None:
-                return self._trad['not_associated']
-            return n
-        elif self._headers[column] is "end_kp":
-            n = self._lst[row].end_kp
-            if n is None:
-                return self._trad['not_associated']
-            return n
-        elif self._headers[column] is "d90":
-            n = self._lst[row].d90
-            if n is None:
-                return self._trad['not_associated']
-            return n
-
-        return QVariant()
-
-    def setData(self, index, value, role=Qt.EditRole):
-        if not index.isValid() or role != Qt.EditRole:
-            return False
-
-        row = index.row()
-        column = index.column()
-
-        try:
-            if self._headers[column] != "reach":
-                self._undo.push(
-                    SetCommandSpec(
-                        self._lst, row, self._headers[column], value
-                    )
-                )
-            elif self._headers[column] == "reach":
-                print(self._river.edge(value).id)
-                self._undo.push(
-                    SetCommandSpec(
-                        self._lst, row, self._headers[column], self._river.edge(value).id
-                    )
-                )
-        except Exception as e:
-            logger.info(e)
-            logger.debug(traceback.format_exc())
-
-        self.dataChanged.emit(index, index)
-        return True
-
-    def add(self, row, parent=QModelIndex()):
-        self.beginInsertRows(parent, row, row - 1)
-
-        self._undo.push(
-            AddCommand(
-                self._data, self._lst, row
-            )
-        )
-
-        self.endInsertRows()
-        self.layoutChanged.emit()
-
-    def delete(self, rows, parent=QModelIndex()):
-        self.beginRemoveRows(parent, rows[0], rows[-1])
-
-        self._undo.push(
-            DelCommand(
-                self._data, self._lst, rows
-            )
-        )
-
-        self.endRemoveRows()
-        self.layoutChanged.emit()
-
-    def undo(self):
-        self._undo.undo()
-        self.layoutChanged.emit()
-
-    def redo(self):
-        self._undo.redo()
-        self.layoutChanged.emit()
-

src/View/D90AdisTS/TableDefault.py

@@ -1,95 +0,0 @@
-# Table.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-import logging
-import traceback
-from tools import trace, timer
-
-from PyQt5.QtCore import (
-    Qt, QVariant, QAbstractTableModel,
-    QCoreApplication, QModelIndex, pyqtSlot,
-    QRect,
-)
-
-from PyQt5.QtWidgets import (
-    QDialogButtonBox, QPushButton, QLineEdit,
-    QFileDialog, QTableView, QAbstractItemView,
-    QUndoStack, QShortcut, QAction, QItemDelegate,
-    QComboBox,
-)
-
-from View.Tools.PamhyrTable import PamhyrTableModel
-
-from View.D90AdisTS.UndoCommand import (
-    SetCommand,
-)
-
-logger = logging.getLogger()
-
-_translate = QCoreApplication.translate
-
-class D90TableDefaultModel(PamhyrTableModel):
-    def __init__(self, **kwargs):
-        super(D90TableDefaultModel, self).__init__(**kwargs)
-
-    def data(self, index, role):
-        if role != Qt.ItemDataRole.DisplayRole:
-            return QVariant()
-
-        row = index.row()
-        column = index.column()
-
-        if self._headers[column] is "name":
-            return self._data[row].name
-        elif self._headers[column] is "d90":
-            n = self._data[row].d90
-            if n is None:
-                return self._trad['not_associated']
-            return n
-
-        return QVariant()
-
-    def setData(self, index, value, role=Qt.EditRole):
-        if not index.isValid() or role != Qt.EditRole:
-            return False
-
-        row = index.row()
-        column = index.column()
-
-        try:
-            if self._headers[column] is not None:
-                self._undo.push(
-                    SetCommand(
-                        self._data, row, self._headers[column], value
-                    )
-                )
-        except Exception as e:
-            logger.info(e)
-            logger.debug(traceback.format_exc())
-
-        self.dataChanged.emit(index, index)
-        return True
-
-    def undo(self):
-        self._undo.undo()
-        self.layoutChanged.emit()
-
-    def redo(self):
-        self._undo.redo()
-        self.layoutChanged.emit()
-

src/View/D90AdisTS/UndoCommand.py

@@ -1,150 +0,0 @@
-# UndoCommand.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-from copy import deepcopy
-from tools import trace, timer
-
-from PyQt5.QtWidgets import (
-    QMessageBox, QUndoCommand, QUndoStack,
-)
-
-from Model.D90AdisTS.D90AdisTS import D90AdisTS
-from Model.D90AdisTS.D90AdisTSList import D90AdisTSList
-
-
-class SetCommand(QUndoCommand):
-    def __init__(self, data, row, column, new_value):
-        QUndoCommand.__init__(self)
-
-        self._data = data
-        self._row = row
-        self._column = column
-
-        if self._column == "name":
-            self._old = self._data[self._row].name
-        elif self._column == "d90":
-            self._old = self._data[self._row].d90
-
-        _type = float
-        if column == "name":
-            _type = str
-
-        self._new = _type(new_value)
-
-    def undo(self):
-        if self._column == "name":
-            self._data[self._row].name = self._old
-        elif self._column == "d90":
-            self._data[self._row].d90 = self._old
-
-    def redo(self):
-        if self._column == "name":
-            self._data[self._row].name = self._new
-        elif self._column == "d90":
-            self._data[self._row].d90 = self._new
-
-class SetCommandSpec(QUndoCommand):
-    def __init__(self, data, row, column, new_value):
-        QUndoCommand.__init__(self)
-
-        self._data = data
-        self._row = row
-        self._column = column
-
-        if self._column == "name":
-            self._old = self._data[self._row].name
-        elif self._column == "reach":
-            self._old = self._data[self._row].reach
-        elif self._column == "start_kp":
-            self._old = self._data[self._row].start_kp
-        elif self._column == "end_kp":
-            self._old = self._data[self._row].end_kp
-        elif self._column == "d90":
-            self._old = self._data[self._row].d90
-
-        _type = float
-        if column == "name":
-            _type = str
-        elif column == "reach":
-            _type = int
-
-        self._new = _type(new_value)
-
-    def undo(self):
-        if self._column == "name":
-            self._data[self._row].name = self._old
-        elif self._column == "reach":
-            self._data[self._row].reach = self._old
-        elif self._column == "start_kp":
-            self._data[self._row].start_kp = self._old
-        elif self._column == "end_kp":
-            self._data[self._row].end_kp = self._old
-        elif self._column == "d90":
-            self._data[self._row].d90 = self._old
-
-    def redo(self):
-        if self._column == "name":
-            self._data[self._row].name = self._new
-        elif self._column == "reach":
-            self._data[self._row].reach = self._new
-        elif self._column == "start_kp":
-            self._data[self._row].start_kp = self._new
-        elif self._column == "end_kp":
-            self._data[self._row].end_kp = self._new
-        elif self._column == "d90":
-            self._data[self._row].d90 = self._new
-
-class AddCommand(QUndoCommand):
-    def __init__(self, data, ics_spec, index):
-        QUndoCommand.__init__(self)
-
-        self._data = data
-        self._ics_spec = ics_spec
-        self._index = index
-        self._new = None
-
-    def undo(self):
-        self._data.delete_i([self._index])
-
-    def redo(self):
-        if self._new is None:
-            self._new = self._data.new(self._index)
-        else:
-            self._data.insert(self._index, self._new)
-
-class DelCommand(QUndoCommand):
-    def __init__(self, data, ics_spec, rows):
-        QUndoCommand.__init__(self)
-
-        self._data = data
-        self._ics_spec = ics_spec
-        self._rows = rows
-        #self._data = data
-
-        self._ic = []
-        for row in rows:
-            self._ic.append((row, self._ics_spec[row]))
-        self._ic.sort()
-
-    def undo(self):
-        for row, el in self._ic:
-            self._data.insert(row, el)
-
-    def redo(self):
-        self._data.delete_i(self._rows)
-

src/View/D90AdisTS/Window.py

@@ -1,283 +0,0 @@
-# Window.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-import os
-import logging
-
-from tools import trace, timer, logger_exception
-
-from View.Tools.PamhyrWindow import PamhyrWindow
-
-from PyQt5.QtGui import (
-    QKeySequence, QIcon,
-)
-
-from PyQt5.QtCore import (
-    Qt, QVariant, QAbstractTableModel,
-    QCoreApplication, QModelIndex, pyqtSlot,
-    QRect, QItemSelectionModel,
-)
-
-from PyQt5.QtWidgets import (
-    QDialogButtonBox, QPushButton, QLineEdit,
-    QFileDialog, QTableView, QAbstractItemView,
-    QUndoStack, QShortcut, QAction, QItemDelegate,
-    QComboBox, QVBoxLayout, QHeaderView, QTabWidget,
-    QVBoxLayout, QToolBar, QAction, QToolButton,
-)
-
-from Modules import Modules
-
-from View.InitialConditionsAdisTS.UndoCommand import (
-    SetCommand,
-)
-
-from View.D90AdisTS.TableDefault import (
-    D90TableDefaultModel,
-)
-
-from View.D90AdisTS.Table import (
-    D90TableModel, ComboBoxDelegate,
-)
-
-from View.D90AdisTS.translate import D90AdisTSTranslate
-
-from Solver.Mage import Mage8
-
-_translate = QCoreApplication.translate
-
-logger = logging.getLogger()
-
-
-class D90AdisTSWindow(PamhyrWindow):
-    _pamhyr_ui = "D90AdisTS"
-    _pamhyr_name = "D90 AdisTS"
-
-    def __init__(self, data=None, study=None, config=None, parent=None):
-        self._data = []
-        self._data.append(data)
-        trad = D90AdisTSTranslate()
-
-        name = (
-            trad[self._pamhyr_name] +
-            " - " + study.name +
-            " - " + self._data[0].name
-        )
-
-        super(D90AdisTSWindow, self).__init__(
-            title=name,
-            study=study,
-            config=config,
-            trad=trad,
-            parent=parent
-        )
-
-        self._hash_data.append(data)
-
-        self._d90_adists_lst = study.river.d90_adists
-
-        self.setup_table()
-
-        self.ui.setWindowTitle(self._title)
-
-    def setup_table(self):
-
-        path_icons = os.path.join(self._get_ui_directory(), f"ressources")
-
-        table_default = self.find(QTableView, f"tableView")
-
-        self._table = D90TableDefaultModel(
-            table_view=table_default,
-            table_headers=self._trad.get_dict("table_headers"),
-            editable_headers=["name", "d90"],
-            delegates={},
-            data=self._data,
-            undo=self._undo_stack,
-            trad=self._trad
-        )
-
-        table_default.setModel(self._table)
-        table_default.setSelectionBehavior(QAbstractItemView.SelectRows)
-        table_default.horizontalHeader().setSectionResizeMode(QHeaderView.Stretch)
-        table_default.setAlternatingRowColors(True)
-
-        layout = self.find(QVBoxLayout, f"verticalLayout_1")
-        toolBar = QToolBar()
-        layout.addWidget(toolBar)
-
-        action_add = QAction(self)
-        action_add.setIcon(QIcon(os.path.join(path_icons, f"add.png")))
-        action_add.triggered.connect(self.add)
-        action_delete = QAction(self)
-        action_delete.setIcon(QIcon(os.path.join(path_icons, f"del.png")))
-        action_delete.triggered.connect(self.delete)
-
-        toolBar.addAction(action_add)
-        toolBar.addAction(action_delete)
-
-        self.table_spec = QTableView()
-        layout.addWidget(self.table_spec)
-
-        self._delegate_reach = ComboBoxDelegate(
-            trad=self._trad,
-            data=self._study.river,
-            ic_spec_lst=self._data[0]._data,
-            parent=self,
-            mode="reaches"
-        )
-        self._delegate_kp = ComboBoxDelegate(
-            trad=self._trad,
-            data=self._study.river,
-            ic_spec_lst=self._data[0]._data,
-            parent=self,
-            mode="kp"
-        )
-
-        self._table_spec = D90TableModel(
-            table_view=self.table_spec,
-            table_headers=self._trad.get_dict("table_headers_spec"),
-            editable_headers=["name", "reach", "start_kp", "end_kp", "d90"],
-            delegates={
-                "reach": self._delegate_reach,
-                "start_kp": self._delegate_kp,
-                "end_kp": self._delegate_kp
-            },
-            data=self._data[0],
-            undo=self._undo_stack,
-            trad=self._trad,
-            river=self._study.river
-        )
-
-        self.table_spec.setModel(self._table_spec)
-        self.table_spec.setSelectionBehavior(QAbstractItemView.SelectRows)
-        self.table_spec.horizontalHeader().setSectionResizeMode(QHeaderView.Stretch)
-        self.table_spec.setAlternatingRowColors(True)
-
-        selectionModel = self.table_spec.selectionModel()
-        index = self.table_spec.model().index(0, 0)
-
-        selectionModel.select(
-            index,
-            QItemSelectionModel.Rows |
-            QItemSelectionModel.ClearAndSelect |
-            QItemSelectionModel.Select
-        )
-        self.table_spec.scrollTo(index)
-
-    def index_selected_row(self):
-        #table = self.find(QTableView, f"tableView")
-        table = self.table_spec
-        rows = table.selectionModel()\
-                    .selectedRows()
-
-        if len(rows) == 0:
-            return 0
-
-        return rows[0].row()
-
-    def index_selected_rows(self):
-        #table = self.find(QTableView, f"tableView")
-        table = self.table_spec
-        return list(
-            # Delete duplicate
-            set(
-                map(
-                    lambda i: i.row(),
-                    table.selectedIndexes()
-                )
-            )
-        )
-
-    def move_up(self):
-        row = self.index_selected_row()
-        self._table.move_up(row)
-        self._update()
-
-    def move_down(self):
-        row = self.index_selected_row()
-        self._table.move_down(row)
-        self._update()
-
-    def _copy(self):
-        rows = list(
-            map(
-                lambda row: row.row(),
-                self.tableView.selectionModel().selectedRows()
-            )
-        )
-
-        table = list(
-            map(
-                lambda eic: list(
-                    map(
-                        lambda k: eic[1][k],
-                        ["kp", "discharge", "elevation"]
-                    )
-                ),
-                filter(
-                    lambda eic: eic[0] in rows,
-                    enumerate(self._ics.lst())
-                )
-            )
-        )
-
-        self.copyTableIntoClipboard(table)
-
-    def _paste(self):
-        header, data = self.parseClipboardTable()
-
-        if len(data) + len(header) == 0:
-            return
-
-        logger.debug(
-            "D90: Paste: " +
-            f"header = {header}, " +
-            f"data = {data}"
-        )
-
-        try:
-            row = self.index_selected_row()
-            # self._table.paste(row, header, data)
-            self._table.paste(row, [], data)
-        except Exception as e:
-            logger_exception(e)
-
-        self._update()
-
-    def _undo(self):
-        self._table.undo()
-        self._update()
-
-    def _redo(self):
-        self._table.redo()
-        self._update()
-
-    def add(self):
-        rows = self.index_selected_rows()
-        if len(self._data[0]._data) == 0 or len(rows) == 0:
-            self._table_spec.add(0)
-        else:
-            self._table_spec.add(rows[0])
-
-    def delete(self):
-        print("del")
-        rows = self.index_selected_rows()
-        if len(rows) == 0:
-            print("len 0")
-            return
-        self._table_spec.delete(rows)

src/View/D90AdisTS/translate.py

@@ -1,46 +0,0 @@
-# translate.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-from PyQt5.QtCore import QCoreApplication
-
-from View.Translate import MainTranslate
-
-_translate = QCoreApplication.translate
-
-
-class D90AdisTSTranslate(MainTranslate):
-    def __init__(self):
-        super(D90AdisTSTranslate, self).__init__()
-
-        self._dict["D90 AdisTS"] = _translate(
-            "D90AdisTS", "D90 AdisTS")
-
-        self._dict["kp"] = self._dict["unit_kp"]
-
-        self._sub_dict["table_headers"] = {
-            "name": self._dict["name"],
-            "d90": _translate("Unit", "D90"),
-        }
-
-        self._sub_dict["table_headers_spec"] = {
-            "name": self._dict["name"],
-            "reach": self._dict["reach"],
-            "start_kp": _translate("Unit", "Start_KP (m)"),
-            "end_kp": _translate("Unit", "End_KP (m)"),
-            "d90": _translate("Unit", "D90"),
-        }

src/View/DIFAdisTS/Table.py

@@ -1,229 +0,0 @@
-# Table.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-import logging
-import traceback
-from tools import trace, timer
-
-from PyQt5.QtCore import (
-    Qt, QVariant, QAbstractTableModel,
-    QCoreApplication, QModelIndex, pyqtSlot,
-    QRect,
-)
-
-from PyQt5.QtWidgets import (
-    QDialogButtonBox, QPushButton, QLineEdit,
-    QFileDialog, QTableView, QAbstractItemView,
-    QUndoStack, QShortcut, QAction, QItemDelegate,
-    QComboBox,
-)
-
-from View.Tools.PamhyrTable import PamhyrTableModel
-
-from View.DIFAdisTS.UndoCommand import (
-    SetCommand, AddCommand, SetCommandSpec,
-    DelCommand,
-)
-
-logger = logging.getLogger()
-
-_translate = QCoreApplication.translate
-
-
-class ComboBoxDelegate(QItemDelegate):
-    def __init__(self, data=None, ic_spec_lst=None, trad=None, parent=None, mode="reaches"):
-        super(ComboBoxDelegate, self).__init__(parent)
-
-        self._data = data
-        self._mode = mode
-        self._trad = trad
-        self._ic_spec_lst = ic_spec_lst
-
-    def createEditor(self, parent, option, index):
-        self.editor = QComboBox(parent)
-
-        val = []
-        if self._mode == "kp":
-            reach_id = self._ic_spec_lst[index.row()].reach
-
-            reach = next(filter(lambda edge: edge.id == reach_id, self._data.edges()))
-
-            if reach_id is not None:
-                val = list(
-                    map(
-                        lambda kp: str(kp), reach.reach.get_kp()
-                    )
-                )
-        elif self._mode == "method":
-            val = self._data.dif_adists.lst[0].types
-        else:
-            val = list(
-                map(
-                    lambda n: n.name, self._data.edges()
-                )
-            )
-
-        self.editor.addItems(
-            [self._trad['not_associated']] +
-            val
-        )
-
-        self.editor.setCurrentText(str(index.data(Qt.DisplayRole)))
-        return self.editor
-
-    def setEditorData(self, editor, index):
-        value = index.data(Qt.DisplayRole)
-        self.editor.currentTextChanged.connect(self.currentItemChanged)
-
-    def setModelData(self, editor, model, index):
-        text = str(editor.currentText())
-        model.setData(index, text)
-        editor.close()
-        editor.deleteLater()
-
-    def updateEditorGeometry(self, editor, option, index):
-        r = QRect(option.rect)
-        if self.editor.windowFlags() & Qt.Popup:
-            if editor.parent() is not None:
-                r.setTopLeft(self.editor.parent().mapToGlobal(r.topLeft()))
-        editor.setGeometry(r)
-
-    @pyqtSlot()
-    def currentItemChanged(self):
-        self.commitData.emit(self.sender())
-
-
-class DIFTableModel(PamhyrTableModel):
-    def __init__(self, river=None, data=None, **kwargs):
-        self._river = river
-
-        super(DIFTableModel, self).__init__(data=data, **kwargs)
-
-        self._data = data
-
-    def _setup_lst(self):
-        self._lst = self._data._data
-
-    def rowCount(self, parent):
-        return len(self._lst)
-
-    def data(self, index, role):
-        if role != Qt.ItemDataRole.DisplayRole:
-            return QVariant()
-
-        row = index.row()
-        column = index.column()
-
-        if self._headers[column] is "method":
-            n = self._lst[row].method
-            if n is None or n == "":
-                return self._trad['not_associated']
-            return n
-        elif self._headers[column] is "reach":
-            n = self._lst[row].reach
-            if n is None:
-                return self._trad['not_associated']
-            return next(filter(lambda edge: edge.id == n, self._river.edges())).name
-        elif self._headers[column] is "start_kp":
-            n = self._lst[row].start_kp
-            if n is None:
-                return self._trad['not_associated']
-            return n
-        elif self._headers[column] is "end_kp":
-            n = self._lst[row].end_kp
-            if n is None:
-                return self._trad['not_associated']
-            return n
-        elif self._headers[column] is "dif":
-            n = self._lst[row].dif
-            if n is None:
-                return self._trad['not_associated']
-            return n
-        elif self._headers[column] is "b":
-            n = self._lst[row].b
-            if n is None:
-                return self._trad['not_associated']
-            return n
-        elif self._headers[column] is "c":
-            n = self._lst[row].c
-            if n is None:
-                return self._trad['not_associated']
-            return n
-
-        return QVariant()
-
-    def setData(self, index, value, role=Qt.EditRole):
-        if not index.isValid() or role != Qt.EditRole:
-            return False
-
-        row = index.row()
-        column = index.column()
-
-        try:
-            if self._headers[column] != "reach":
-                self._undo.push(
-                    SetCommandSpec(
-                        self._lst, row, self._headers[column], value
-                    )
-                )
-            elif self._headers[column] == "reach":
-                print(self._river.edge(value).id)
-                self._undo.push(
-                    SetCommandSpec(
-                        self._lst, row, self._headers[column], self._river.edge(value).id
-                    )
-                )
-        except Exception as e:
-            logger.info(e)
-            logger.debug(traceback.format_exc())
-
-        self.dataChanged.emit(index, index)
-        return True
-
-    def add(self, row, parent=QModelIndex()):
-        self.beginInsertRows(parent, row, row - 1)
-
-        self._undo.push(
-            AddCommand(
-                self._data, self._lst, row
-            )
-        )
-
-        self.endInsertRows()
-        self.layoutChanged.emit()
-
-    def delete(self, rows, parent=QModelIndex()):
-        self.beginRemoveRows(parent, rows[0], rows[-1])
-
-        self._undo.push(
-            DelCommand(
-                self._data, self._lst, rows
-            )
-        )
-
-        self.endRemoveRows()
-        self.layoutChanged.emit()
-
-    def undo(self):
-        self._undo.undo()
-        self.layoutChanged.emit()
-
-    def redo(self):
-        self._undo.redo()
-        self.layoutChanged.emit()
-

src/View/DIFAdisTS/TableDefault.py

@@ -1,108 +0,0 @@
-# Table.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-import logging
-import traceback
-from tools import trace, timer
-
-from PyQt5.QtCore import (
-    Qt, QVariant, QAbstractTableModel,
-    QCoreApplication, QModelIndex, pyqtSlot,
-    QRect,
-)
-
-from PyQt5.QtWidgets import (
-    QDialogButtonBox, QPushButton, QLineEdit,
-    QFileDialog, QTableView, QAbstractItemView,
-    QUndoStack, QShortcut, QAction, QItemDelegate,
-    QComboBox,
-)
-
-from View.Tools.PamhyrTable import PamhyrTableModel
-
-from View.DIFAdisTS.UndoCommand import (
-    SetCommand,
-)
-
-logger = logging.getLogger()
-
-_translate = QCoreApplication.translate
-
-class DIFTableDefaultModel(PamhyrTableModel):
-    def __init__(self, **kwargs):
-        super(DIFTableDefaultModel, self).__init__(**kwargs)
-
-    def data(self, index, role):
-        if role != Qt.ItemDataRole.DisplayRole:
-            return QVariant()
-
-        row = index.row()
-        column = index.column()
-
-        if self._headers[column] is "method":
-            n = self._data[row].method
-            if n is None:
-                return self._trad['not_associated']
-            return n
-        elif self._headers[column] is "dif":
-            n = self._data[row].dif
-            if n is None:
-                return self._trad['not_associated']
-            return n
-        elif self._headers[column] is "b":
-            n = self._data[row].b
-            if n is None:
-                return self._trad['not_associated']
-            return n
-        elif self._headers[column] is "c":
-            n = self._data[row].c
-            if n is None:
-                return self._trad['not_associated']
-            return n
-
-        return QVariant()
-
-    def setData(self, index, value, role=Qt.EditRole):
-        if not index.isValid() or role != Qt.EditRole:
-            return False
-
-        row = index.row()
-        column = index.column()
-
-        try:
-            if self._headers[column] is not None:
-                self._undo.push(
-                    SetCommand(
-                        self._data, row, self._headers[column], value
-                    )
-                )
-        except Exception as e:
-            logger.info(e)
-            logger.debug(traceback.format_exc())
-
-        self.dataChanged.emit(index, index)
-        return True
-
-    def undo(self):
-        self._undo.undo()
-        self.layoutChanged.emit()
-
-    def redo(self):
-        self._undo.redo()
-        self.layoutChanged.emit()
-

src/View/DIFAdisTS/UndoCommand.py

@@ -1,174 +0,0 @@
-# UndoCommand.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-from copy import deepcopy
-from tools import trace, timer
-
-from PyQt5.QtWidgets import (
-    QMessageBox, QUndoCommand, QUndoStack,
-)
-
-from Model.DIFAdisTS.DIFAdisTS import DIFAdisTS
-from Model.DIFAdisTS.DIFAdisTSList import DIFAdisTSList
-
-
-class SetCommand(QUndoCommand):
-    def __init__(self, data, row, column, new_value):
-        QUndoCommand.__init__(self)
-
-        self._data = data
-        self._row = row
-        self._column = column
-
-        if self._column == "method":
-            self._old = self._data[self._row].method
-        elif self._column == "dif":
-            self._old = self._data[self._row].dif
-        elif self._column == "b":
-            self._old = self._data[self._row].b
-        elif self._column == "c":
-            self._old = self._data[self._row].c
-
-        _type = float
-        if column == "method":
-            _type = str
-
-        self._new = _type(new_value)
-
-    def undo(self):
-        if self._column == "method":
-            self._data[self._row].method = self._old
-        elif self._column == "dif":
-            self._data[self._row].dif = self._old
-        elif self._column == "b":
-            self._data[self._row].b = self._old
-        elif self._column == "c":
-            self._data[self._row].c = self._old
-
-    def redo(self):
-        if self._column == "method":
-            self._data[self._row].method = self._new
-        elif self._column == "dif":
-            self._data[self._row].dif = self._new
-        elif self._column == "b":
-            self._data[self._row].b = self._new
-        elif self._column == "c":
-            self._data[self._row].c = self._new
-
-class SetCommandSpec(QUndoCommand):
-    def __init__(self, data, row, column, new_value):
-        QUndoCommand.__init__(self)
-
-        self._data = data
-        self._row = row
-        self._column = column
-
-        if self._column == "method":
-            self._old = self._data[self._row].method
-        elif self._column == "reach":
-            self._old = self._data[self._row].reach
-        elif self._column == "start_kp":
-            self._old = self._data[self._row].start_kp
-        elif self._column == "end_kp":
-            self._old = self._data[self._row].end_kp
-        elif self._column == "dif":
-            self._old = self._data[self._row].dif
-        elif self._column == "b":
-            self._old = self._data[self._row].b
-        elif self._column == "c":
-            self._old = self._data[self._row].c
-
-        _type = float
-        if column == "method":
-            _type = str
-        elif column == "reach":
-            _type = int
-
-        self._new = _type(new_value)
-
-    def undo(self):
-        if self._column == "method":
-            self._data[self._row].method = self._old
-        elif self._column == "reach":
-            self._data[self._row].reach = self._old
-        elif self._column == "start_kp":
-            self._data[self._row].start_kp = self._old
-        elif self._column == "end_kp":
-            self._data[self._row].end_kp = self._old
-        elif self._column == "dif":
-            self._data[self._row].dif = self._old
-        elif self._column == "b":
-            self._data[self._row].b = self._old
-        elif self._column == "c":
-            self._data[self._row].c = self._old
-
-    def redo(self):
-        if self._column == "method":
-            self._data[self._row].method = self._new
-        elif self._column == "reach":
-            self._data[self._row].reach = self._new
-        elif self._column == "start_kp":
-            self._data[self._row].start_kp = self._new
-        elif self._column == "end_kp":
-            self._data[self._row].end_kp = self._new
-        elif self._column == "dif":
-            self._data[self._row].dif = self._new
-        elif self._column == "b":
-            self._data[self._row].b = self._new
-        elif self._column == "c":
-            self._data[self._row].c = self._new
-
-class AddCommand(QUndoCommand):
-    def __init__(self, data, ics_spec, index):
-        QUndoCommand.__init__(self)
-
-        self._data = data
-        self._ics_spec = ics_spec
-        self._index = index
-        self._new = None
-
-    def undo(self):
-        self._data.delete_i([self._index])
-
-    def redo(self):
-        if self._new is None:
-            self._new = self._data.new(self._index)
-        else:
-            self._data.insert(self._index, self._new)
-
-class DelCommand(QUndoCommand):
-    def __init__(self, data, ics_spec, rows):
-        QUndoCommand.__init__(self)
-
-        self._data = data
-        self._ics_spec = ics_spec
-        self._rows = rows
-        #self._data = data
-
-        self._ic = []
-        for row in rows:
-            self._ic.append((row, self._ics_spec[row]))
-        self._ic.sort()
-
-    def undo(self):
-        for row, el in self._ic:
-            self._data.insert(row, el)
-
-    def redo(self):
-        self._data.delete_i(self._rows)
-

src/View/DIFAdisTS/Window.py

@@ -1,290 +0,0 @@
-# Window.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-import os
-import logging
-
-from tools import trace, timer, logger_exception
-
-from View.Tools.PamhyrWindow import PamhyrWindow
-
-from PyQt5.QtGui import (
-    QKeySequence, QIcon,
-)
-
-from PyQt5.QtCore import (
-    Qt, QVariant, QAbstractTableModel,
-    QCoreApplication, QModelIndex, pyqtSlot,
-    QRect, QItemSelectionModel,
-)
-
-from PyQt5.QtWidgets import (
-    QDialogButtonBox, QPushButton, QLineEdit,
-    QFileDialog, QTableView, QAbstractItemView,
-    QUndoStack, QShortcut, QAction, QItemDelegate,
-    QComboBox, QVBoxLayout, QHeaderView, QTabWidget,
-    QVBoxLayout, QToolBar, QAction, QToolButton,
-)
-
-from Modules import Modules
-
-from View.DIFAdisTS.TableDefault import (
-    DIFTableDefaultModel,
-)
-
-from View.DIFAdisTS.Table import (
-    DIFTableModel, ComboBoxDelegate,
-)
-
-from View.DIFAdisTS.translate import DIFAdisTSTranslate
-
-from Solver.Mage import Mage8
-
-_translate = QCoreApplication.translate
-
-logger = logging.getLogger()
-
-
-class DIFAdisTSWindow(PamhyrWindow):
-    _pamhyr_ui = "DIFAdisTS"
-    _pamhyr_name = "DIF AdisTS"
-
-    def __init__(self, data=None, study=None, config=None, parent=None):
-        self._data = []
-        self._data.append(data)
-        trad = DIFAdisTSTranslate()
-
-        name = (
-            trad[self._pamhyr_name] +
-            " - " + study.name +
-            " - " + self._data[0].name
-        )
-
-        super(DIFAdisTSWindow, self).__init__(
-            title=name,
-            study=study,
-            config=config,
-            trad=trad,
-            parent=parent
-        )
-
-        self._hash_data.append(data)
-
-        self._dif_adists_lst = study.river.dif_adists
-
-        self.setup_table()
-
-        self.ui.setWindowTitle(self._title)
-
-    def setup_table(self):
-
-        path_icons = os.path.join(self._get_ui_directory(), f"ressources")
-
-        table_default = self.find(QTableView, f"tableView")
-
-        self._delegate_method = ComboBoxDelegate(
-            trad=self._trad,
-            data=self._study.river,
-            ic_spec_lst=self._data[0]._data,
-            parent=self,
-            mode="method"
-        )
-
-        self._table = DIFTableDefaultModel(
-            table_view=table_default,
-            table_headers=self._trad.get_dict("table_headers"),
-            editable_headers=["method", "dif", "b", "c"],
-            delegates={
-                "method": self._delegate_method
-            },
-            data=self._data,
-            undo=self._undo_stack,
-            trad=self._trad
-        )
-
-        table_default.setModel(self._table)
-        table_default.setSelectionBehavior(QAbstractItemView.SelectRows)
-        table_default.horizontalHeader().setSectionResizeMode(QHeaderView.Stretch)
-        table_default.setAlternatingRowColors(True)
-
-        layout = self.find(QVBoxLayout, f"verticalLayout_1")
-        toolBar = QToolBar()
-        layout.addWidget(toolBar)
-
-        action_add = QAction(self)
-        action_add.setIcon(QIcon(os.path.join(path_icons, f"add.png")))
-        action_add.triggered.connect(self.add)
-        action_delete = QAction(self)
-        action_delete.setIcon(QIcon(os.path.join(path_icons, f"del.png")))
-        action_delete.triggered.connect(self.delete)
-
-        toolBar.addAction(action_add)
-        toolBar.addAction(action_delete)
-
-        self.table_spec = QTableView()
-        layout.addWidget(self.table_spec)
-
-        self._delegate_reach = ComboBoxDelegate(
-            trad=self._trad,
-            data=self._study.river,
-            ic_spec_lst=self._data[0]._data,
-            parent=self,
-            mode="reaches"
-        )
-        self._delegate_kp = ComboBoxDelegate(
-            trad=self._trad,
-            data=self._study.river,
-            ic_spec_lst=self._data[0]._data,
-            parent=self,
-            mode="kp"
-        )
-
-        self._table_spec = DIFTableModel(
-            table_view=self.table_spec,
-            table_headers=self._trad.get_dict("table_headers_spec"),
-            editable_headers=["method", "reach", "start_kp", "end_kp", "dif", "b", "c"],
-            delegates={
-                "method": self._delegate_method,
-                "reach": self._delegate_reach,
-                "start_kp": self._delegate_kp,
-                "end_kp": self._delegate_kp
-            },
-            data=self._data[0],
-            undo=self._undo_stack,
-            trad=self._trad,
-            river=self._study.river
-        )
-
-        self.table_spec.setModel(self._table_spec)
-        self.table_spec.setSelectionBehavior(QAbstractItemView.SelectRows)
-        self.table_spec.horizontalHeader().setSectionResizeMode(QHeaderView.Stretch)
-        self.table_spec.setAlternatingRowColors(True)
-
-        selectionModel = self.table_spec.selectionModel()
-        index = self.table_spec.model().index(0, 0)
-
-        selectionModel.select(
-            index,
-            QItemSelectionModel.Rows |
-            QItemSelectionModel.ClearAndSelect |
-            QItemSelectionModel.Select
-        )
-        self.table_spec.scrollTo(index)
-
-    def index_selected_row(self):
-        #table = self.find(QTableView, f"tableView")
-        table = self.table_spec
-        rows = table.selectionModel()\
-                    .selectedRows()
-
-        if len(rows) == 0:
-            return 0
-
-        return rows[0].row()
-
-    def index_selected_rows(self):
-        #table = self.find(QTableView, f"tableView")
-        table = self.table_spec
-        return list(
-            # Delete duplicate
-            set(
-                map(
-                    lambda i: i.row(),
-                    table.selectedIndexes()
-                )
-            )
-        )
-
-    def move_up(self):
-        row = self.index_selected_row()
-        self._table.move_up(row)
-        self._update()
-
-    def move_down(self):
-        row = self.index_selected_row()
-        self._table.move_down(row)
-        self._update()
-
-    def _copy(self):
-        rows = list(
-            map(
-                lambda row: row.row(),
-                self.tableView.selectionModel().selectedRows()
-            )
-        )
-
-        table = list(
-            map(
-                lambda eic: list(
-                    map(
-                        lambda k: eic[1][k],
-                        ["kp", "discharge", "elevation"]
-                    )
-                ),
-                filter(
-                    lambda eic: eic[0] in rows,
-                    enumerate(self._ics.lst())
-                )
-            )
-        )
-
-        self.copyTableIntoClipboard(table)
-
-    def _paste(self):
-        header, data = self.parseClipboardTable()
-
-        if len(data) + len(header) == 0:
-            return
-
-        logger.debug(
-            "DIF: Paste: " +
-            f"header = {header}, " +
-            f"data = {data}"
-        )
-
-        try:
-            row = self.index_selected_row()
-            # self._table.paste(row, header, data)
-            self._table.paste(row, [], data)
-        except Exception as e:
-            logger_exception(e)
-
-        self._update()
-
-    def _undo(self):
-        self._table.undo()
-        self._update()
-
-    def _redo(self):
-        self._table.redo()
-        self._update()
-
-    def add(self):
-        rows = self.index_selected_rows()
-        if len(self._data[0]._data) == 0 or len(rows) == 0:
-            self._table_spec.add(0)
-        else:
-            self._table_spec.add(rows[0])
-
-    def delete(self):
-        print("del")
-        rows = self.index_selected_rows()
-        if len(rows) == 0:
-            print("len 0")
-            return
-        self._table_spec.delete(rows)

src/View/DIFAdisTS/translate.py

@@ -1,50 +0,0 @@
-# translate.py -- Pamhyr
-# Copyright (C) 2023-2024  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-from PyQt5.QtCore import QCoreApplication
-
-from View.Translate import MainTranslate
-
-_translate = QCoreApplication.translate
-
-
-class DIFAdisTSTranslate(MainTranslate):
-    def __init__(self):
-        super(DIFAdisTSTranslate, self).__init__()
-
-        self._dict["DIF AdisTS"] = _translate(
-            "DIFAdisTS", "DIF AdisTS")
-
-        self._dict["kp"] = self._dict["unit_kp"]
-
-        self._sub_dict["table_headers"] = {
-            "method": self._dict["method"],
-            "dif": _translate("Unit", "DIF"),
-            "b": _translate("Unit", "Coeff b"),
-            "c": _translate("Unit", "Coeff c"),
-        }
-
-        self._sub_dict["table_headers_spec"] = {
-            "method": self._dict["method"],
-            "reach": self._dict["reach"],
-            "start_kp": _translate("Unit", "Start_KP (m)"),
-            "end_kp": _translate("Unit", "End_KP (m)"),
-            "dif": _translate("Unit", "DIF"),
-            "b": _translate("Unit", "Coeff b"),
-            "c": _translate("Unit", "Coeff c"),
-        }

src/View/Debug/__init__.py

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023-2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-

src/View/Doc/__init__.py

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023-2024  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-

src/View/Frictions/PlotStricklers.py

@@ -42,7 +42,7 @@ class PlotStricklers(PamhyrPlot):
         )
 
         self.label_x = self._trad["kp"]
-        self.label_y = self._trad["stricklers"]
+        self.label_y = self._trad["strickler_plot"]
 
         self.line_kp_elevation = [None, None]