Script: Fix pep8.

Stricklers and friction.

.editorconfig

@@ -0,0 +1,12 @@
+# Pamhyr .editorconfig
+
+root = true
+
+[*.py]
+charset = utf-8
+indent_style = space
+indent_size = 4
+tab_width = 8
+end_of_line = lf
+trim_trailing_whitespace = true
+insert_final_newline = true

.gitignore

@@ -1,6 +1,7 @@
 ### CUSTOM ###
 
 *.exe
+*.msi
 *.tar.xz
 *.zip
 *.spec
@@ -9,15 +10,33 @@
 
 tmp
 
+*.tar
 *.tar.*
+*.tgz
 *.zip
 
+*.html
+*.pdf
+*.odt
+
+doc/dev/images/auto_*
+doc/dev/documentation.*
+!doc/dev/*.org
+
+doc/dev/images/auto_*
+doc/users/documentation.*
+!doc/users/*.org
+
+TAGS
+
 pamhyrBuild
 wine-pamhyr-build*
 
 _PAMHYR_
 __old__
 
+*-venv
+
 ### END CUSTOM ###
 
 # Created by https://www.toptal.com/developers/gitignore/api/python
@@ -309,3 +328,318 @@ compile_commands.json
 *_qmlcache.qrc
 
 # End of https://www.toptal.com/developers/gitignore/api/qt
+
+# Created by https://www.toptal.com/developers/gitignore/api/latex
+# Edit at https://www.toptal.com/developers/gitignore?templates=latex
+
+### LaTeX ###
+## Core latex/pdflatex auxiliary files:
+*.aux
+*.lof
+*.log
+*.lot
+*.fls
+*.out
+*.toc
+*.fmt
+*.fot
+*.cb
+*.cb2
+.*.lb
+
+## Intermediate documents:
+*.dvi
+*.xdv
+*-converted-to.*
+# these rules might exclude image files for figures etc.
+# *.ps
+# *.eps
+# *.pdf
+
+## Generated if empty string is given at "Please type another file name for output:"
+.pdf
+
+## Bibliography auxiliary files (bibtex/biblatex/biber):
+*.bbl
+*.bcf
+*.blg
+*-blx.aux
+*-blx.bib
+*.run.xml
+
+## Build tool auxiliary files:
+*.fdb_latexmk
+*.synctex
+*.synctex(busy)
+*.synctex.gz
+*.synctex.gz(busy)
+*.pdfsync
+
+## Build tool directories for auxiliary files
+# latexrun
+latex.out/
+
+## Auxiliary and intermediate files from other packages:
+# algorithms
+*.alg
+*.loa
+
+# achemso
+acs-*.bib
+
+# amsthm
+*.thm
+
+# beamer
+*.nav
+*.pre
+*.snm
+*.vrb
+
+# changes
+*.soc
+
+# comment
+*.cut
+
+# cprotect
+*.cpt
+
+# elsarticle (documentclass of Elsevier journals)
+*.spl
+
+# endnotes
+*.ent
+
+# fixme
+*.lox
+
+# feynmf/feynmp
+*.mf
+*.mp
+*.t[1-9]
+*.t[1-9][0-9]
+*.tfm
+
+#(r)(e)ledmac/(r)(e)ledpar
+*.end
+*.?end
+*.[1-9]
+*.[1-9][0-9]
+*.[1-9][0-9][0-9]
+*.[1-9]R
+*.[1-9][0-9]R
+*.[1-9][0-9][0-9]R
+*.eledsec[1-9]
+*.eledsec[1-9]R
+*.eledsec[1-9][0-9]
+*.eledsec[1-9][0-9]R
+*.eledsec[1-9][0-9][0-9]
+*.eledsec[1-9][0-9][0-9]R
+
+# glossaries
+*.acn
+*.acr
+*.glg
+*.glo
+*.gls
+*.glsdefs
+*.lzo
+*.lzs
+*.slg
+*.slo
+*.sls
+
+# uncomment this for glossaries-extra (will ignore makeindex's style files!)
+# *.ist
+
+# gnuplot
+*.gnuplot
+*.table
+
+# gnuplottex
+*-gnuplottex-*
+
+# gregoriotex
+*.gaux
+*.glog
+*.gtex
+
+# htlatex
+*.4ct
+*.4tc
+*.idv
+*.lg
+*.trc
+*.xref
+
+# hyperref
+*.brf
+
+# knitr
+*-concordance.tex
+# TODO Uncomment the next line if you use knitr and want to ignore its generated tikz files
+# *.tikz
+*-tikzDictionary
+
+# listings
+*.lol
+
+# luatexja-ruby
+*.ltjruby
+
+# makeidx
+*.idx
+*.ilg
+*.ind
+
+# minitoc
+*.maf
+*.mlf
+*.mlt
+*.mtc[0-9]*
+*.slf[0-9]*
+*.slt[0-9]*
+*.stc[0-9]*
+
+# minted
+_minted*
+*.pyg
+
+# morewrites
+*.mw
+
+# newpax
+*.newpax
+
+# nomencl
+*.nlg
+*.nlo
+*.nls
+
+# pax
+*.pax
+
+# pdfpcnotes
+*.pdfpc
+
+# sagetex
+*.sagetex.sage
+*.sagetex.py
+*.sagetex.scmd
+
+# scrwfile
+*.wrt
+
+# svg
+svg-inkscape/
+
+# sympy
+*.sout
+*.sympy
+sympy-plots-for-*.tex/
+
+# pdfcomment
+*.upa
+*.upb
+
+# pythontex
+*.pytxcode
+pythontex-files-*/
+
+# tcolorbox
+*.listing
+
+# thmtools
+*.loe
+
+# TikZ & PGF
+*.dpth
+*.md5
+*.auxlock
+
+# titletoc
+*.ptc
+
+# todonotes
+*.tdo
+
+# vhistory
+*.hst
+*.ver
+
+# easy-todo
+*.lod
+
+# xcolor
+*.xcp
+
+# xmpincl
+*.xmpi
+
+# xindy
+*.xdy
+
+# xypic precompiled matrices and outlines
+*.xyc
+*.xyd
+
+# endfloat
+*.ttt
+*.fff
+
+# Latexian
+TSWLatexianTemp*
+
+## Editors:
+# WinEdt
+*.bak
+*.sav
+
+# Texpad
+.texpadtmp
+
+# LyX
+*.lyx~
+
+# Kile
+*.backup
+
+# gummi
+.*.swp
+
+# KBibTeX
+*~[0-9]*
+
+# TeXnicCenter
+*.tps
+
+# auto folder when using emacs and auctex
+./auto/*
+*.el
+
+# expex forward references with \gathertags
+*-tags.tex
+
+# standalone packages
+*.sta
+
+# Makeindex log files
+*.lpz
+
+# xwatermark package
+*.xwm
+
+# REVTeX puts footnotes in the bibliography by default, unless the nofootinbib
+# option is specified. Footnotes are the stored in a file with suffix Notes.bib.
+# Uncomment the next line to have this generated file ignored.
+#*Notes.bib
+
+### LaTeX Patch ###
+# LIPIcs / OASIcs
+*.vtc
+
+# glossaries
+*.glstex
+
+# End of https://www.toptal.com/developers/gitignore/api/latex

.gitlab-ci.yml

@@ -15,97 +15,57 @@
 # along with this program.  If not, see <https://www.gnu.org/licenses/>.
 
 stages:
-  - build
+  - downloads
+  - configure
   - test
+  - build
   - package
   - release
 
-#########
+#############
-# BUILD #
+# DOWNLOADS #
-#########
+#############
 
-build-mage-linux:
+dl-mage-linux:
-  stage: build
+  stage: downloads
   tags:
     - linux
   rules:
-    - if: $CI_COMMIT_BRANCH == 'master' || $CI_COMMIT_TAG
+    - if: $CI_COMMIT_BRANCH == 'ci-test' || $CI_COMMIT_BRANCH == 'master' || $CI_COMMIT_TAG
   script:
     - curl -L -o mage.tgz https://gitlab.irstea.fr/jean-baptiste.faure/mage/-/releases/Test6/downloads/packages/mage_linux.tgz
-    - mkdir -p mage
+    - mkdir -p mage-linux
-    - cd mage
+    - cd mage-linux
     - tar xvf ../mage.tgz
   artifacts:
     paths:
-      - mage/mage
+      - mage-linux/mage
-      - mage/mage_extraire
+      - mage-linux/mage_extraire
-      - mage/mailleurPF
+      - mage-linux/mailleurPF
 
-# build-mage-linux:
+dl-mage-windows:
-#   stage: build
+  stage: downloads
-#   tags:
-#     - linux
-#   rules:
-#     - if: $CI_COMMIT_BRANCH == 'master' || $CI_COMMIT_TAG
-#   variables:
-#     GIT_SUBMODULE_STRATEGY: recursive
-#     GIT_SUBMODULE_DEPTH: 20
-#   script:
-#     - cd mage/src/
-#     - mkdir -p build
-#     - cd build
-#     - cmake ..
-#     - make
-#   artifacts:
-#     paths:
-#       - mage/src/build/mage
-#       - mage/src/build/mage_extraire
-#       - mage/src/build/mailleurPF
-
-build-mage-windows:
-  stage: build
   tags:
     - linux
   rules:
-    - if: $CI_COMMIT_BRANCH == 'master' || $CI_COMMIT_TAG
+    - if: $CI_COMMIT_BRANCH == 'ci-test' || $CI_COMMIT_BRANCH == 'master' || $CI_COMMIT_TAG
   script:
     - curl -L -o mage.tgz https://gitlab.irstea.fr/jean-baptiste.faure/mage/-/releases/Test6/downloads/packages/mage_windows.tgz
-    - mkdir -p mage
+    - mkdir -p mage-windows
-    - cd mage
+    - cd mage-windows
     - tar xvf ../mage.tgz
   artifacts:
     paths:
-      - mage/mage.exe
+      - mage-windows/mage.exe
-      - mage/mage_extraire.exe
+      - mage-windows/mage_extraire.exe
-      - mage/mailleurPF.exe
+      - mage-windows/mailleurPF.exe
 
-# build-mage-windows:
+#############
-#   stage: build
+# CONFIGURE #
-#   tags:
+#############
-#     - wine
-#   rules:
-#     - if: $CI_COMMIT_BRANCH == 'master' || $CI_COMMIT_TAG
-#   variables:
-#     GIT_SUBMODULE_STRATEGY: recursive
-#     GIT_SUBMODULE_DEPTH: 20
-#   script:
-#     - cd mage/src/
-#     - sed s/add_compile_definitions(win)/add_compile_definitions(windows)/ CMakeLists.txt > __tmp__
-#     - echo set(CMAKE_Fortran_COMPILER "C:/Program\ Files/gcc/bin/gfortran.exe") > CMakeLists.txt
-#     - echo set(CMAKE_MAKE_PROGRAM "C:/Program Files\ \(x86\)/GnuWin32/bin/make.exe") >> CMakeLists.txt
-#     - type __tmp__ >> CMakeLists.txt
-#     - mkdir build
-#     - cd build
-#     - cmake -G "MinGW Makefiles" ..
-#     - make
-#   artifacts:
-#     paths:
-#       - mage/src/build/mage.exe
-#       - mage/src/build/mage_extraire.exe
-#       - mage/src/build/mailleurPF.exe
 
-build:
+set-version:
-  stage: build
+  stage: configure
   tags:
     - linux
   script:
@@ -116,7 +76,7 @@ build:
       - VERSION
 
 build-lang:
-  stage: build
+  stage: configure
   tags:
     - linux
   script:
@@ -130,56 +90,261 @@ build-lang:
 # TESTS #
 #########
 
-test:
+unittest:
   stage: test
+  tags:
+    - linux
+  needs:
+    - job: set-version
+      artifacts: true
   script:
-    - echo "TODO PAMHYR tests"
+    - python3 -m venv venv
+    - . venv/bin/activate
+    - pip3 install -U pip
+    - pip3 install -r ./full-requirements.txt
+    - pip3 install -U -r ./full-requirements.txt
+    - cd src
+    - python3 -m unittest discover -t .
+
+test-pep8:
+  stage: test
+  tags:
+    - linux
+  needs:
+    - job: set-version
+      artifacts: true
+    - job: unittest
+  script:
+    # Setup virtual env
+    - python3 -m venv venv
+    - . venv/bin/activate
+    - pip3 install -U pip
+    - pip3 install -r ./requirements.txt
+    - pip3 install -U -r ./requirements.txt
+    - pip3 install pycodestyle
+    - pycodestyle ./src
+  allow_failure: true
+
+#########
+# BUILD #
+#########
+
+build-users-doc:
+  stage: build
+  tags:
+    - linux
+  needs:
+    - job: set-version
+      artifacts: true
+  script:
+    - cd ./doc/users/
+    - ./build.sh
+  artifacts:
+    paths:
+      - doc/users/documentation.pdf
+      - doc/users/documentation.html
+      - doc/users/images/
+  allow_failure: true
+
+build-developers-doc:
+  stage: build
+  tags:
+    - linux
+  needs:
+    - job: set-version
+      artifacts: true
+  script:
+    - cd ./doc/dev/
+    - ./build.sh
+    # Create html documentation
+    - cd ../../src
+    - python3 -m venv doc-venv
+    - . doc-venv/bin/activate
+    - pip3 install -U pip
+    - pip3 install -r ../full-requirements.txt
+    - pip3 install -U -r ../full-requirements.txt
+    - pip3 install pdoc3
+    - pdoc --html .
+    # Create archive
+    - tar cf html.tar ./html
+    - cd ../doc/dev
+    - mv ../../src/html.tar ./
+  artifacts:
+    paths:
+      - doc/dev/documentation.pdf
+      - doc/dev/documentation.html
+      - doc/dev/html.tar
+      - doc/dev/images/
+  allow_failure: true
+
+build-linux:
+  stage: build
+  tags:
+    - linux
+  rules:
+    - if: $CI_COMMIT_BRANCH == 'ci-test' || $CI_COMMIT_BRANCH == 'master' || $CI_COMMIT_TAG
+  needs:
+    - job: dl-mage-linux
+      artifacts: true
+    - job: set-version
+      artifacts: true
+    - job: build-lang
+      artifacts: true
+    - job: build-developers-doc
+      artifacts: true
+    - job: build-users-doc
+      artifacts: true
+  script:
+    - mkdir -p linux
+    - cd linux
+    # Setup virtual env
+    - python3 -m venv linux-venv
+    - . linux-venv/bin/activate
+    - pip3 install -U pip
+    - pip3 install -r ../requirements.txt
+    - pip3 install -U -r ../requirements.txt
+    # Run Pyinstaller
+    - pyinstaller -y --paths linux-venv/lib/python3.8/site-packages ../src/pamhyr.py
+    # Create directory
+    - mkdir -p pamhyr
+    - mkdir -p pamhyr/pamhyr
+    - mkdir -p pamhyr/pamhyr/_internal
+    # Copy Pamhyr info
+    - cp -v ../VERSION pamhyr/pamhyr/_internal/
+    - cp -v ../AUTHORS pamhyr/pamhyr/_internal/
+    - cp -v ../LICENSE pamhyr/pamhyr/_internal/
+    - cp -v ../src/motd.txt pamhyr/pamhyr/_internal/
+    # Copy mage
+    - mkdir -p pamhyr/mage
+    - cp -v ../mage-linux/* pamhyr/mage/
+    # Copy Pamhyr
+    - cp -r dist/pamhyr pamhyr/
+    # Copy Pamhyr resources
+    - mkdir -p pamhyr/pamhyr/_internal/View
+    - mkdir -p pamhyr/pamhyr/_internal/View/ui
+    - mkdir -p pamhyr/pamhyr/_internal/View/ui/Widgets
+    - cp -r ../src/View/ui/*.ui pamhyr/pamhyr/_internal/View/ui/
+    - cp -r ../src/View/ui/ressources/ pamhyr/pamhyr/_internal/View/ui
+    - cp -r ../src/View/ui/Widgets/*.ui pamhyr/pamhyr/_internal/View/ui/Widgets
+    # Copy lang
+    - mkdir -p pamhyr/pamhyr/_internal/lang
+    - cp -r ../src/lang/*.qm pamhyr/pamhyr/_internal/lang
+    # Copy tests cases
+    - mkdir -p pamhyr/tests_cases/
+    - mkdir -p pamhyr/tests_cases/Saar
+    - cp ../tests_cases/Saar/Saar.pamhyr pamhyr/tests_cases/Saar/
+    # Copy documentations
+    - mkdir -p pamhyr/doc/
+    - mkdir -p pamhyr/doc/images/
+    - mkdir -p pamhyr/doc/html/
+    - cp ../doc/users/documentation.pdf pamhyr/doc/Pamhyr2-users.pdf
+    - cp ../doc/users/documentation.html pamhyr/doc/Pamhyr2-users.html
+    - cp ../doc/dev/documentation.pdf pamhyr/doc/Pamhyr2-dev.pdf
+    - cp ../doc/dev/documentation.html pamhyr/doc/Pamhyr2-dev.html
+    #- cp ../doc/users/images/* pamhyr/doc/images
+    - cp ../doc/dev/images/* pamhyr/doc/images
+    - cp ../doc/images/* pamhyr/doc/images
+    # Create running script
+    - echo "#!/bin/sh" > pamhyr/Pamhyr2
+    - echo "./pamhyr/pamhyr $@" >> pamhyr/Pamhyr2
+    - chmod u+x pamhyr/Pamhyr2
+  artifacts:
+    paths:
+      - linux/pamhyr
+
+build-windows:
+  stage: build
+  tags:
+    - wine
+  rules:
+    - if: $CI_COMMIT_BRANCH == 'ci-test' || $CI_COMMIT_BRANCH == 'master' || $CI_COMMIT_TAG
+  needs:
+    - job: dl-mage-windows
+      artifacts: true
+    - job: set-version
+      artifacts: true
+    - job: build-lang
+      artifacts: true
+    - job: build-developers-doc
+      artifacts: true
+    - job: build-users-doc
+      artifacts: true
+  script:
+    - mkdir windows
+    - cd windows
+    # Setup env
+    - python -m pip install -r ..\requirements.txt
+    - python -m pip install -U -r ..\requirements.txt
+    # Run Pyinstaller
+    - pyinstaller -y ..\src\pamhyr.py
+    # Create directory
+    - mkdir pamhyr
+    - dir
+    - copy ..\packages\make-windows-dir.bat .\make-windows-dir.bat
+    - .\make-windows-dir.bat
+  artifacts:
+    paths:
+      - windows/pamhyr
 
 ############
 # PACKAGES #
 ############
 
-linux-package:
+linux-package-tar:
   stage: package
   tags:
     - release
     - linux
   needs:
-    - job: build-lang
+    # - job: test-linux
-      artifacts: true
+    - job: build-linux
-    - job: build
-      artifacts: true
-    - job: build-mage-linux
       artifacts: true
   rules:
-    - if: $CI_COMMIT_BRANCH == 'master' || $CI_COMMIT_TAG
+    - if: $CI_COMMIT_BRANCH == 'ci-test' || $CI_COMMIT_TAG
   artifacts:
     paths:
-      - packages/pamhyr-gnulinux-amd64.tar.xz
+      - linux/pamhyr-gnulinux.tar.xz
   script:
-    - cd packages
+    - cd linux
-    - ./linux.sh
+    - tar --xz -cf pamhyr-gnulinux.tar.xz ./pamhyr --checkpoint=.100
 
-windows-package:
+windows-package-zip:
+  stage: package
+  tags:
+    - release
+    - linux
+  needs:
+    # - job: test-windows
+    - job: build-windows
+      artifacts: true
+  rules:
+    - if: $CI_COMMIT_BRANCH == 'ci-test' || $CI_COMMIT_TAG
+  artifacts:
+    paths:
+      - windows/pamhyr-windows.zip
+  script:
+    - cd windows
+    - zip -r pamhyr-windows.zip pamhyr
+
+windows-package-exe:
   stage: package
   tags:
     - release
     - wine
   needs:
-    - job: build-lang
+    # - job: test-windows
-      artifacts: true
+    - job: build-windows
-    - job: build
-      artifacts: true
-    - job: build-mage-windows
       artifacts: true
   rules:
-    - if: $CI_COMMIT_BRANCH == 'master' || $CI_COMMIT_TAG
+    - if: $CI_COMMIT_BRANCH == 'ci-test' || $CI_COMMIT_TAG
   artifacts:
     paths:
-      - packages/pamhyr-win-amd64.exe
+      - windows/pamhyr-windows.exe
   script:
-    - cd packages
+    - cd windows
-    - ./windows.bat
+    - copy ..\packages\make-windows-exe.bat make-windows-exe.bat
+    - copy ..\packages\pamhyr.nsi pamhyr.nsi
+    - .\make-windows-exe.bat
 
 ###########
 # RELEASE #
@@ -191,16 +356,25 @@ tag-release:
     - release
     - linux
   needs:
-    - job: linux-package
+    - job: linux-package-tar
       artifacts: true
-    - job: windows-package
+    - job: windows-package-zip
+      artifacts: true
+    - job: windows-package-exe
+      artifacts: true
+    - job: build-users-doc
+      artifacts: true
+    - job: build-developers-doc
       artifacts: true
   rules:
     - if: $CI_COMMIT_TAG
   artifacts:
     paths:
-      - packages/pamhyr-gnulinux-amd64.tar.xz
+      - linux/pamhyr-gnulinux.tar.xz
-      - packages/pamhyr-win-amd64.exe
+      - windows/pamhyr-windows.zip
+      - windows/pamhyr-windows.exe
+      - doc/dev/documentation.pdf
+      - doc/users/documentation.pdf
   script:
     - cd packages
   release:
@@ -210,11 +384,23 @@ tag-release:
     ref: '$CI_COMMIT_SHA'
     assets:
       links:
-        - name: 'GNU/Linux amd64 (tar.xz)'
+        - name: 'GNU/Linux (tar.xz)'
-          url: '${CI_PROJECT_URL}/-/jobs/${CI_JOB_ID}/artifacts/raw/packages/pamhyr-gnulinux-amd64.tar.xz'
+          url: '${CI_PROJECT_URL}/-/jobs/${CI_JOB_ID}/artifacts/raw/linux/pamhyr-gnulinux.tar.xz'
-          filepath: '/packages/pamhyr-gnulinux-amd64.tar.xz'
+          filepath: '/linux/pamhyr-gnulinux.tar.xz'
           link_type: 'package'
-        - name: 'Windows amd64 (exe)'
+        - name: 'Windows (exe)'
-          url: '${CI_PROJECT_URL}/-/jobs/${CI_JOB_ID}/artifacts/raw/packages/pamhyr-win-amd64.exe'
+          url: '${CI_PROJECT_URL}/-/jobs/${CI_JOB_ID}/artifacts/raw/windows/pamhyr-windows.exe'
-          filepath: '/packages/pamhyr-win-amd64.exe'
+          filepath: '/windows/pamhyr-windows.exe'
           link_type: 'package'
+        - name: 'Windows (zip)'
+          url: '${CI_PROJECT_URL}/-/jobs/${CI_JOB_ID}/artifacts/raw/windows/pamhyr-windows.zip'
+          filepath: '/windows/pamhyr-windows.zip'
+          link_type: 'package'
+        - name: 'User documentations (pdf)'
+          url: '${CI_PROJECT_URL}/-/jobs/${CI_JOB_ID}/artifacts/raw/doc/users/documentation.pdf'
+          filepath: '/doc/users/documentation.pdf'
+          link_type: 'other'
+        - name: 'Dev documentations (pdf)'
+          url: '${CI_PROJECT_URL}/-/jobs/${CI_JOB_ID}/artifacts/raw/doc/dev/documentation.pdf'
+          filepath: '/doc/dev/documentation.pdf'
+          link_type: 'other'

README.md

@@ -47,5 +47,4 @@ pip3 install -r requirements.txt
 
 # Run pamhyr
 ./src/pamhyr.py
-
 ```

doc/dev/build.sh

@@ -0,0 +1,18 @@
+#! /bin/sh
+
+echo " PDF  documentation.org"
+emacs -nw --batch                                       \
+      --eval "(require 'org)"                           \
+      --eval "(require 'ox-latex)"                      \
+      --eval "(load-file \"../tools/setup.el\")"        \
+      --file ./documentation.org                        \
+      -f org-latex-export-to-pdf
+
+echo " HTML documentation.org"
+emacs -nw --batch                                       \
+      --eval "(require 'org)"                           \
+      --eval "(require 'ox-latex)"                      \
+      --eval "(require 'ox-html)"                       \
+      --eval "(load-file \"../tools/setup.el\")"        \
+      --file ./documentation.org                        \
+      -f org-html-export-to-html

doc/dev/documentation.bib

@@ -0,0 +1 @@
+../tools/ref.bib

doc/tools/PamhyrDoc.cls

@@ -0,0 +1,163 @@
+\ProvidesClass{Pamhyr}[Pamhyr class]
+\NeedsTeXFormat{LaTeX2e}
+\ProcessOptions\relax
+\LoadClass[11pt,a4paper]{article}
+
+\usepackage[hmargin=2cm, vmargin=3cm]{geometry}
+\usepackage[british,UKenglish,USenglish,english,american]{babel}
+\usepackage[T1]{fontenc}
+\usepackage{times}
+\usepackage[usenames,dvipsnames]{xcolor}
+\usepackage[absolute]{textpos}
+\usepackage{titlesec}
+\usepackage{amssymb}
+\usepackage{tcolorbox}
+
+\usepackage{enumitem}
+\setlist[enumerate]{itemsep=-0.5em}
+\setlist[itemize]{itemsep=-0.5em}
+
+%%
+%% Bibtex
+%%
+
+\bibliographystyle{plain}
+
+%%
+%% Colors
+%%
+
+\definecolor{primary}{HTML}{212121}
+\definecolor{lightheadings}{HTML}{5c5c5c}
+\definecolor{headings}{HTML}{212121}
+\definecolor{links}{HTML}{e12121}
+
+%%
+%% Title
+%%
+
+\setlength{\columnsep}{20pt}
+\setlength{\parskip}{0pt}      %% inter paragraph space
+
+\renewcommand{\maketitle}{
+    {
+      \centering
+      {
+        \fontsize{35}{40}
+        \selectfont
+        \scshape
+        Pamhyr2 \\
+        \medskip
+      }
+      {
+        %\centering
+        \scshape
+        \fontsize{20pt}{24pt}
+        \selectfont
+        A graphical user interface for 1D hydro-sedimentary modelling
+        of rivers \\
+        \medskip
+      }
+      \rule{3cm}{0.4pt}\\
+      \vspace{0.3cm}
+      {
+        %\centering
+        \scshape
+        \fontsize{26pt}{24pt}
+        \selectfont
+        \@title \\
+        Document licence: GPLv3 \\
+        \medskip
+        \includegraphics[width=3cm]{../images/GPLv3_Logo.png} \\
+        \medskip
+        \fontsize{14pt}{16pt}
+        \selectfont
+        © \@author \\
+        \medskip
+      }
+      {
+        %\centering
+        %\scshape
+        \fontsize{12pt}{14pt}
+        \selectfont
+        \@date
+        %\medskip
+      }\\
+      \vspace{0.3cm}
+      \rule{3cm}{0.4pt}\\
+      \vspace{0.3cm}
+      {
+        \begin{minipage}[h]{0.24\textwidth}
+          \includegraphics[width=4cm]{../../src/View/ui/ressources/Logo-INRAE.png}
+        \end{minipage}
+        \begin{minipage}[h]{0.24\textwidth}
+          \includegraphics[width=4cm]{../images/riverly.png}
+        \end{minipage}
+      }\\
+      \vspace{0.3cm}
+      %%\rule{\textwidth}{0.4pt}
+      %%\newpage
+    }
+}
+
+
+%%
+%% Texttt
+%%
+
+\usepackage[htt]{hyphenat}      % Make texttt split at end of line
+
+%%
+%% Verbatim
+%%
+
+\AtBeginEnvironment{verbatim}{\footnotesize}
+
+%% Add box arrond of verbatim
+\BeforeBeginEnvironment{verbatim}{\begin{tcolorbox}[boxsep=0pt, left=0.1cm, right=0.1cm, arc=0pt, boxrule=0.5pt, colback=white]}%
+\AfterEndEnvironment{verbatim}{\end{tcolorbox}}%
+
+\makeatletter
+\AtBeginEnvironment{verbatim}{\dontdofcolorbox}
+
+\def\dontdofcolorbox{\renewcommand\fcolorbox[4][]{##4}}
+\makeatother
+
+%%
+%% Source code blocks
+%%
+
+%% Use minted
+\usepackage{minted}
+\usemintedstyle{tango}
+\setminted[c]{fontsize=\footnotesize,encoding=utf8,linenos}
+\setminted[c++]{breaklines,fontsize=\footnotesize,encoding=utf8,linenos}
+\setminted[python]{breaklines,fontsize=\footnotesize,encoding=utf8,linenos}
+\setminted[shell]{breaklines,fontsize=\footnotesize,encoding=utf8}
+\setminted[scheme]{breaklines,fontsize=\footnotesize,encoding=utf8}
+\setminted[commun-lisp]{breaklines,fontsize=\footnotesize,encoding=utf8}
+\setminted[text]{breaklines,fontsize=\footnotesize,encoding=utf8}
+\setminted[llvm]{breaklines,fontsize=\footnotesize,encoding=utf8}
+
+%% Add box arrond of minted
+\BeforeBeginEnvironment{minted}{\begin{tcolorbox}[boxsep=0pt, left=0.1cm, right=0.1cm, arc=0pt, boxrule=0.5pt, colback=white]}%
+\AfterEndEnvironment{minted}{\end{tcolorbox}}%
+
+\makeatletter
+\AtBeginEnvironment{minted}{\dontdofcolorbox}
+
+\def\dontdofcolorbox{\renewcommand\fcolorbox[4][]{##4}}
+\makeatother
+
+
+%%
+%% Water mark
+%%
+
+%% FIXME: Delete me for the first realease
+\usepackage{draftwatermark}
+\SetWatermarkLightness{0.8}
+\SetWatermarkAngle{25}
+\SetWatermarkScale{3}
+\SetWatermarkFontSize{1cm}
+\SetWatermarkText{Work in progress}

doc/tools/latex.org

@@ -0,0 +1,19 @@
+# latex.org -- Pamhyr documentation latex config
+# Copyright (C) 2023  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-
+
+#+LaTeX_CLASS: PamhyrDoc

doc/tools/macro.org

@@ -0,0 +1,51 @@
+# macro.org -- Pamhyr documentation macro
+# Copyright (C) 2023  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-
+
+# Constant name
+#+MACRO: oldPamhyr     PAMHyR
+#+MACRO: Pamhyr        Pamhyr2
+#+MACRO: Mage          Mage
+#+MACRO: Rubarbe       RubarBE
+#+MACRO: Inrae         INRAE
+#+MACRO: latex         \LaTeX
+
+# Information
+#+MACRO: version       (eval (pamhyr-version))
+#+MACRO: current-file  (eval (pamhyr-current-file))
+
+# Special format
+#+MACRO: file          =$1=
+
+# Biblio
+#+MACRO: cite          [cite:$1]
+#+MACRO: biblio        \bibliography{documentation}
+
+# Wrapper
+#+NAME: attr_wrap
+#+HEADER: :var width="\\textwidth"
+#+HEADER: :var caption=""
+#+HEADER: :var smallcaption=""
+#+HEADER: :var name=""
+#+HEADER: :var data=""
+#+HEADER: :var float="nil"
+#+BEGIN_SRC sh :results output :exports none
+  echo "#+CAPTION[$smallcaption]: $caption"
+  echo "#+NAME: $name"
+  echo "#+ATTR_LATEX: :width $width :float $float"
+  echo "$data"
+#+END_SRC

doc/tools/setup.el

@@ -0,0 +1,66 @@
+(require 'org)
+(require 'subr-x)
+
+;; LaTeX config
+
+(add-to-list
+ 'org-latex-classes
+ '("PamhyrDoc"
+   "\\documentclass{../tools/PamhyrDoc}"
+   ("\\section{%s}" . "\\section*{%s}")
+   ("\\subsection{%s}" . "\\subsection*{%s}")
+   ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
+   ("\\paragraph{%s}" . "\\paragraph*{%s}")
+   ("\\subparagraph{%s}" . "\\subparagraph*{%s}")))
+
+(setq org-confirm-babel-evaluate nil)
+(setq org-latex-caption-above nil)
+
+(org-babel-do-load-languages
+   'org-babel-load-languages
+   (add-to-list 'org-babel-load-languages '(shell . t)))
+
+(org-babel-do-load-languages
+ 'org-babel-load-languages
+ (add-to-list 'org-babel-load-languages '(dot . t)))
+
+(org-babel-do-load-languages
+ 'org-babel-load-languages
+ (add-to-list 'org-babel-load-languages '(python . t)))
+
+(add-to-list 'org-latex-packages-alist '("" "minted"))
+(setq org-latex-listings 'minted)
+(setq org-src-fontify-natively t)
+
+(setq org-latex-pdf-process
+      '("pdflatex -shell-escape -interaction nonstopmode -output-directory %o %f"
+        "bibtex documentation"
+        "pdflatex -shell-escape -interaction nonstopmode -output-directory %o %f"
+        "pdflatex -shell-escape -interaction nonstopmode -output-directory %o %f"))
+
+;; Citations
+
+(org-add-link-type
+ "cite" 'ebib
+ (lambda (path desc format)
+   (cond
+    ((eq format 'html)
+     (format "(<cite>%s</cite>)" path))
+    ((eq format 'latex)
+     (if (or (not desc) (equal 0 (search "cite:" desc)))
+         (format "\\cite{%s}" path)
+       (format "\\cite[%s][%s]{%s}"
+               (cadr (split-string desc ";"))
+               (car (split-string desc ";"))  path))))))
+
+;; Functools
+
+(defun pamhyr-version ()
+  "Return the contents of the pamhyr version file."
+  (with-temp-buffer
+    (insert-file-contents "../../VERSION")
+    (buffer-string)))
+
+(defun pamhyr-current-file ()
+  (let ((lst (split-string (buffer-file-name) "/")))
+    (string-join (nthcdr (- (length lst) 3) lst) "/")))

doc/users/build.sh

@@ -0,0 +1,18 @@
+#! /bin/sh
+
+echo " PDF  documentation.org"
+emacs -nw --batch                                       \
+      --eval "(require 'org)"                           \
+      --eval "(require 'ox-latex)"                      \
+      --eval "(load-file \"../tools/setup.el\")"        \
+      --file ./documentation.org                        \
+      -f org-latex-export-to-pdf
+
+echo " HTML documentation.org"
+emacs -nw --batch                                       \
+      --eval "(require 'org)"                           \
+      --eval "(require 'ox-latex)"                      \
+      --eval "(require 'ox-html)"                       \
+      --eval "(load-file \"../tools/setup.el\")"        \
+      --file ./documentation.org                        \
+      -f org-html-export-to-html

doc/users/documentation.bib

@@ -0,0 +1 @@
+../tools/ref.bib

doc/users/documentation.org

@@ -0,0 +1,20 @@
+#+STARTUP: indent
+
+#+INCLUDE: ../tools/macro.org
+#+INCLUDE: ../tools/latex.org
+
+#+TITLE: User documentation
+#+SUBTITLE: Version: {{{version}}}
+#+AUTHOR: {{{INRAE}}}
+
+#+OPTIONS: toc:t
+#+LANGUAGE: UKenglish
+
+* TODO Over view
+* TODO Get started
+** Installation
+*** Linux
+*** Windows
+* TODO Usage
+
+{{{biblio}}}

full-requirements.txt

@@ -0,0 +1,11 @@
+PyQt5==5.15.4
+PyQt5-Qt5==5.15.2
+PyQt5-sip==12.12.2
+PyQtWebEngine==5.15.6
+QScintilla>=2.14.1
+pyqtgraph>=0.12.1
+matplotlib>=3.4.1
+numpy>=1.24.2
+colorama>=0.4.3
+pyinstaller>=5.11.0
+shapely>=2.0.1

packages/linux.sh

@@ -25,6 +25,7 @@ echo " *** SETUP ENV"
 
 python3 -m venv linux-pamhyr-venv
 . linux-pamhyr-venv/bin/activate
+pip3 install -U pip
 pip3 install -r ../requirements.txt
 
 echo " *** PYINSTALL"
@@ -43,18 +44,22 @@ cd $OLD_PWD
 
 echo " *** COPY DATA"
 
-mkdir -p dist/pamhyr/View/ui
+mkdir -p dist/pamhyr/_internal/View/ui
-mkdir -p dist/pamhyr/View/ui/Widgets
+mkdir -p dist/pamhyr/_internal/View/ui/Widgets
-cp -r ../src/View/ui/ressources/ dist/pamhyr/View/ui/
+cp -r ../src/View/ui/ressources/ dist/pamhyr/_internal/View/ui/
-cp -r ../src/View/ui/Widgets/*.ui dist/pamhyr/View/ui/Widgets/
+cp -r ../src/View/ui/Widgets/*.ui dist/pamhyr/_internal/View/ui/Widgets/
-cp -r ../src/View/ui/*.ui dist/pamhyr/View/ui/
+cp -r ../src/View/ui/*.ui dist/pamhyr/_internal/View/ui/
 
 mkdir -p dist/pamhyr/lang
 cp -r ../src/lang/*.qm dist/pamhyr/lang/
 
-cp ../VERSION dist/pamhyr/
+mkdir dist/pamhyr/_internal/
-cp ../AUTHORS dist/pamhyr/
+#cp ../VERSION dist/pamhyr/_internal/
-cp ../LICENSE dist/pamhyr/
+VERSION=$(cat ../VERSION)
+echo "local-build-$VERSION" > dist/pamhyr/_internal/VERSION
+cp ../AUTHORS dist/pamhyr/_internal/
+cp ../LICENSE dist/pamhyr/_internal/
+cp ../src/motd.txt dist/pamhyr/_internal/
 
 mkdir -p dist/pamhyr/mage/
 cp ../mage/mage dist/pamhyr/mage/
@@ -65,6 +70,18 @@ mkdir -p dist/pamhyr/tests_cases/
 mkdir -p dist/pamhyr/tests_cases/Saar
 cp ../tests_cases/Saar/Saar.pamhyr dist/pamhyr/tests_cases/Saar/
 
+mkdir -p dist/pamhyr/doc/
+cp ../doc/dev/documentation.pdf dist/pamhyr/doc/Pamhyr2-dev.pdf
+cp ../doc/dev/documentation.html dist/pamhyr/doc/Pamhyr2-dev.html
+
+cp ../doc/users/documentation.pdf dist/pamhyr/doc/Pamhyr2-users.pdf
+cp ../doc/users/documentation.html dist/pamhyr/doc/Pamhyr2-users.html
+
+mkdir -p dist/pamhyr/doc/images
+cp ../doc/users/images/* dist/pamhyr/doc/images/
+cp ../doc/dev/images/* dist/pamhyr/doc/images/
+cp ../doc/images/* dist/pamhyr/doc/images/
+
 echo " *** MAKE SRC PACKAGE"
 
 OLD_PWD=$PWD
@@ -76,11 +93,11 @@ mv ../pamhyr-src.tar.gz ./
 
 echo " *** MAKE BIN PACKAGE"
 
-OLD_PWD=$PWD
+# OLD_PWD=$PWD
-cd dist/
+# cd dist/
-tar --xz -cf pamhyr-gnulinux-amd64.tar.xz pamhyr --checkpoint=.100
+# tar --xz -cf pamhyr-gnulinux-amd64.tar.xz pamhyr --checkpoint=.100
-cd $OLD_PWD
+# cd $OLD_PWD
 
-mv dist/pamhyr-gnulinux-amd64.tar.xz ./
+# mv dist/pamhyr-gnulinux-amd64.tar.xz ./
 
 echo " *** DONE"

packages/make-windows-dir.bat

@@ -0,0 +1,61 @@
+rem windows.bat -- Pamhyr Windows batch for windows version building
+rem Copyright (C) 2023  INRAE
+rem
+rem This program is free software: you can redistribute it and/or modify
+rem it under the terms of the GNU General Public License as published by
+rem the Free Software Foundation, either version 3 of the License, or
+rem (at your option) any later version.
+rem
+rem This program is distributed in the hope that it will be useful,
+rem but WITHOUT ANY WARRANTY; without even the implied warranty of
+rem MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+rem GNU General Public License for more details.
+rem
+rem You should have received a copy of the GNU General Public License
+rem along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+@ECHO ON
+
+mkdir pamhyr\pamhyr\_internal
+xcopy /s /e /y dist\pamhyr pamhyr\pamhyr
+
+rem Copy data
+mkdir pamhyr\pamhyr\_internal\lang
+mkdir pamhyr\pamhyr\_internal\View\ui\ressources
+mkdir pamhyr\pamhyr\_internal\View\ui\Widgets
+
+rem UI
+copy /y ..\src\View\ui\ressources\ pamhyr\pamhyr\_internal\View\ui\ressources
+copy /y ..\src\View\ui\Widgets\*.ui pamhyr\pamhyr\_internal\View\ui\Widgets
+copy /y ..\src\View\ui\*.ui pamhyr\pamhyr\_internal\View\ui\
+
+rem Lang
+copy /y ..\src\lang\*.qm pamhyr\pamhyr\_internal\lang\
+
+rem Information
+copy /y ..\VERSION pamhyr\pamhyr\_internal
+copy /y ..\AUTHORS pamhyr\pamhyr\_internal
+copy /y ..\LICENSE pamhyr\pamhyr\_internal
+copy /y ..\src\motd.txt pamhyr\pamhyr\_internal
+
+rem MAGE
+mkdir pamhyr\mage
+copy /y ..\mage-windows\mage.exe pamhyr\mage\
+copy /y ..\mage-windows\mage_extraire.exe pamhyr\mage\
+copy /y ..\mage-windows\mailleurPF.exe pamhyr\mage\
+
+rem Copy tests_cases
+mkdir pamhyr\tests_cases
+mkdir pamhyr\tests_cases\Saar
+copy /y ..\tests_cases\Saar\Saar.pamhyr pamhyr\tests_cases\Saar\
+
+rem Documentations
+mkdir pamhyr\doc
+mkdir pamhyr\doc\images
+copy /y ..\doc\users\documentation.pdf pamhyr\doc\Pamhyr2-users.pdf
+copy /y ..\doc\dev\documentation.pdf pamhyr\doc\Pamhyr2-dev.pdf
+copy /y ..\doc\users\documentation.html pamhyr\doc\Pamhyr2-users.html
+copy /y ..\doc\dev\documentation.html pamhyr\doc\Pamhyr2-dev.html
+copy /y ..\doc\users\images\* pamhyr\doc\images
+copy /y ..\doc\dev\images\* pamhyr\doc\images
+copy /y ..\doc\images\* pamhyr\doc\images

packages/make-windows-exe.bat

@@ -0,0 +1,20 @@
+rem windows.bat -- Pamhyr Windows batch for windows version building
+rem Copyright (C) 2023  INRAE
+rem
+rem This program is free software: you can redistribute it and/or modify
+rem it under the terms of the GNU General Public License as published by
+rem the Free Software Foundation, either version 3 of the License, or
+rem (at your option) any later version.
+rem
+rem This program is distributed in the hope that it will be useful,
+rem but WITHOUT ANY WARRANTY; without even the implied warranty of
+rem MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+rem GNU General Public License for more details.
+rem
+rem You should have received a copy of the GNU General Public License
+rem along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+@ECHO ON
+
+rem Make installer
+"C:\Program Files (x86)\NSIS\makensis.exe" pamhyr.nsi

packages/pamhyr.nsi

@@ -3,17 +3,17 @@
 !define LIC_NAME "LICENSE"
 !define APP_NAME "PAMHYR"
 
-Name "PAMHYR"
+Name "Pamhyr2"
-OutFile "pamhyr-win-amd64.exe"
+OutFile "pamhyr-windows.exe"
-LicenseData "..\LICENSE"
+LicenseData "pamhyr\pamhyr\_internal\LICENSE"
 LicenseText "I Agree"
 
 RequestExecutionLevel admin
 
 Unicode True
-InstallDir $PROGRAMFILES\PAMHYR
+InstallDir $PROGRAMFILES\Pamhyr2
 
-InstallDirRegKey HKLM "Software\PAMHYR" "Install_Dir"
+InstallDirRegKey HKLM "Software\Pamhyr2" "Install_Dir"
 
 Page license
 Page components
@@ -23,35 +23,39 @@ Page instfiles
 UninstPage uninstConfirm
 UninstPage instfiles
 
-Section "PAMHYR"
+Section "Pamhyr2"
   SectionIn RO
 
   SetOutPath $INSTDIR
 
-  File /r "dist\pamhyr\*"
+  File /r "pamhyr\*"
 
-  WriteRegStr HKLM "Software\Microsoft\Windows\CurrentVersion\Uninstall\PAMHYR" "DisplayName" "NSIS PAMHYR"
+  WriteRegStr HKLM "Software\Microsoft\Windows\CurrentVersion\Uninstall\Pamhyr2" "DisplayName" "NSIS Pamhyr2"
-  WriteRegStr HKLM "Software\Microsoft\Windows\CurrentVersion\Uninstall\PAMHYR" "UninstallString" "$INSTDIR\uninstall.exe"
+  WriteRegStr HKLM "Software\Microsoft\Windows\CurrentVersion\Uninstall\Pamhyr2" "UninstallString" "$INSTDIR\uninstall.exe"
-  WriteRegDWORD HKLM "Software\Microsoft\Windows\CurrentVersion\Uninstall\PAMHYR" "NoModify" 1
+  WriteRegDWORD HKLM "Software\Microsoft\Windows\CurrentVersion\Uninstall\Pamhyr2" "NoModify" 1
-  WriteRegDWORD HKLM "Software\Microsoft\Windows\CurrentVersion\Uninstall\PAMHYR" "NoRepair" 1
+  WriteRegDWORD HKLM "Software\Microsoft\Windows\CurrentVersion\Uninstall\Pamhyr2" "NoRepair" 1
   WriteUninstaller "$INSTDIR\uninstall.exe"
 
 SectionEnd
 
 Section "Start Menu Shortcuts"
+  CreateDirectory "$SMPROGRAMS\Pamhyr2"
+  CreateShortcut "$SMPROGRAMS\Pamhyr2\Uninstall.lnk" "$INSTDIR\uninstall.exe"
+  CreateShortcut "$SMPROGRAMS\Pamhyr2\Pamhyr2.lnk" "$INSTDIR\pamhyr\pamhyr.exe"
+SectionEnd
 
-  CreateDirectory "$SMPROGRAMS\PAMHYR"
+Section "Desktop Shortcuts"
-  CreateShortcut "$SMPROGRAMS\PAMHYR\Uninstall.lnk" "$INSTDIR\uninstall.exe"
+  SetShellVarContext all
-  CreateShortcut "$SMPROGRAMS\PAMHYR\PAMHYR.lnk" "$INSTDIR\pamhyr.exe"
+  CreateShortcut "$desktop\Pamhyr2.lnk" "$instdir\pamhyr\pamhyr.exe"
-
 SectionEnd
 
 Section "Uninstall"
-  DeleteRegKey HKLM "Software\Microsoft\Windows\CurrentVersion\Uninstall\PAMHYR"
+  DeleteRegKey HKLM "Software\Microsoft\Windows\CurrentVersion\Uninstall\Pamhyr2"
-  DeleteRegKey HKLM SOFTWARE\NSIS_PAMHYR
+  DeleteRegKey HKLM SOFTWARE\NSIS_Pamhyr2
 
-  Delete "$SMPROGRAMS\PAMHYR\*.lnk"
+  Delete "$SMPROGRAMS\Pamhyr2\*.lnk"
+  Delete "$desktop\Pamhyr2.lnk"
 
-  RMDir "$SMPROGRAMS\PAMHYR"
+  RMDir "$SMPROGRAMS\Pamhyr2"
   RMDir /R "$INSTDIR"
 SectionEnd

packages/wine.sh

@@ -81,13 +81,42 @@ wine pyinstaller ../src/pamhyr.py -y
 
 echo " *** COPY DATA"
 
-mkdir -p dist/pamhyr/View/ui
+mkdir -p pamhyr
-cp -r ../src/View/ui/ressources/ dist/pamhyr/View/ui/
+mkdir -p pamhyr/pamhyr
-cp -r ../src/View/ui/Widgets/*.ui dist/pamhyr/View/ui/
-cp -r ../src/View/ui/*.ui dist/pamhyr/View/ui/
 
-cp ../VERSION dist/pamhyr/
+# Copy Pamhyr info
-cp ../AUTHORS dist/pamhyr/
+cp -v ../VERSION pamhyr/pamhyr/
+cp -v ../AUTHORS pamhyr/pamhyr/
+cp -v ../LICENSE pamhyr/pamhyr/
+
+# Copy mage
+mkdir -p pamhyr/mage
+cp -v ../mage/* pamhyr/mage/
+
+# Copy Pamhyr
+cp -r dist/pamhyr pamhyr/
+
+# Copy Pamhyr resources
+mkdir -p pamhyr/pamhyr/View
+mkdir -p pamhyr/pamhyr/View/ui
+mkdir -p pamhyr/pamhyr/View/ui/Widgets
+cp -r ../src/View/ui/*.ui pamhyr/pamhyr/View/ui/
+cp -r ../src/View/ui/ressources/ pamhyr/pamhyr/View/ui
+cp -r ../src/View/ui/Widgets/*.ui pamhyr/pamhyr/View/ui/Widgets
+
+# Copy lang
+mkdir -p pamhyr/pamhyr/lang
+cp -r ../src/lang/*.qm pamhyr/pamhyr/lang
+
+# Copy tests cases
+mkdir -p pamhyr/tests_cases/
+mkdir -p pamhyr/tests_cases/Saar
+cp ../tests_cases/Saar/Saar.pamhyr pamhyr/tests_cases/Saar/
+
+# Copy documentations
+mkdir -p pamhyr/doc/
+cp ../doc/users/documentation.pdf pamhyr/doc/Pamhyr2-users.pdf
+cp ../doc/dev/documentation.pdf pamhyr/doc/Pamhyr2-dev.pdf
 
 # Update TS and build QM files
 OLD_PWD=$PWD
@@ -102,19 +131,19 @@ echo " *** MAKE PACKAGES"
 
 echo " TAR pamhyr-win-amd64.tar.xz"
 
-OLD_PWD=$PWD
+# OLD_PWD=$PWD
-cd dist/
+# cd dist/
-tar --xz -cf pamhyr-win-amd64.tar.xz pamhyr --checkpoint=.100
+# tar --xz -cf pamhyr-win-amd64.tar.xz pamhyr --checkpoint=.100
-cd $OLD_PWD
+# cd $OLD_PWD
-mv dist/pamhyr-win-amd64.tar.xz ./
+# mv dist/pamhyr-win-amd64.tar.xz ./
 
 echo " ZIP pamhyr-win-amd64.zip"
 
-OLD_PWD=$PWD
+# OLD_PWD=$PWD
-cd dist/
+# cd dist/
-zip -r pamhyr-win-amd64.zip pamhyr/
+# zip -r pamhyr-win-amd64.zip pamhyr/
-cd $OLD_PWD
+# cd $OLD_PWD
-mv dist/pamhyr-win-amd64.zip ./
+# mv dist/pamhyr-win-amd64.zip ./
 
 echo " *** MAKE INSTALLER"
 

requirements.txt

@@ -1,6 +1,8 @@
 PyQt5==5.15.4
 PyQt5-Qt5==5.15.2
-PyQt5-sip==12.8.1
+PyQt5-sip==12.12.2
+#PyQtWebEngine==5.15.6
+QScintilla>=2.14.1
 pyqtgraph>=0.12.1
 matplotlib>=3.4.1
 numpy>=1.24.2

src/Checker/Checker.py

@@ -20,12 +20,14 @@ from enum import Enum
 
 from Model.Except import NotImplementedMethodeError
 
+
 class STATUS(Enum):
     UNKNOWN = -1
     OK = 0
     WARNING = 1
     ERROR = 2
 
+
 class AbstractModelChecker(object):
     def __init__(self):
         self._name = ""
@@ -62,6 +64,12 @@ class AbstractModelChecker(object):
 
     # Abstract function
 
+    def _run(self, study):
+        from Model.Study import Study
+
+        thread_study = Study.open(study._filename)
+        self.run(thread_study)
+
     def run(self, study):
         """Run checker function
 

src/Checker/Mage.py

@@ -27,8 +27,9 @@ from Checker.Checker import AbstractModelChecker, STATUS
 
 _translate = QCoreApplication.translate
 
+
 class MageNetworkGraphChecker(AbstractModelChecker):
-    def __init__(self, connectivity = True):
+    def __init__(self, connectivity=True):
         super(MageNetworkGraphChecker, self).__init__()
 
         self._mode_conn = connectivity
@@ -38,8 +39,10 @@ class MageNetworkGraphChecker(AbstractModelChecker):
         else:
             mode = "cycle"
 
-        self._name = _translate("Checker", f"Mage network graph {mode} checker")
+        self._name = _translate(
-        self._description = _translate("Checker", "Check if the network graph is valid")
+            "Checker", f"Mage network graph {mode} checker")
+        self._description = _translate(
+            "Checker", "Check if the network graph is valid")
 
     @timer
     def _connectivity(self, summary, status, graph):

src/Checker/Study.py

@@ -30,7 +30,8 @@ class StudyNetworkReachChecker(AbstractModelChecker):
         super(StudyNetworkReachChecker, self).__init__()
 
         self._name = _translate("Checker", "Study network reach checker")
-        self._description = _translate("Checker", "Check if exists at least one reach for study")
+        self._description = _translate(
+            "Checker", "Check if exists at least one reach for study")
 
     def run(self, study):
         if study is None:
@@ -54,12 +55,14 @@ class StudyNetworkReachChecker(AbstractModelChecker):
         self._status = STATUS.OK
         return True
 
+
 class StudyGeometryChecker(AbstractModelChecker):
     def __init__(self):
         super(StudyGeometryChecker, self).__init__()
 
         self._name = _translate("Checker", "Study geometry checker")
-        self._description = _translate("Checker", "Check if exists geometry for each reach of study")
+        self._description = _translate(
+            "Checker", "Check if exists geometry for each reach of study")
         self._reachs = []
 
     def run(self, study):
@@ -128,6 +131,7 @@ class DummyWARNING(AbstractModelChecker):
 
         return True
 
+
 class DummyERROR(AbstractModelChecker):
     def __init__(self):
         super(DummyERROR, self).__init__()

src/Model/AModelComponent.py

@@ -1,10 +0,0 @@
-# -*- coding: utf-8 -*-
-
-class AbstractModelComponent(object):
-    def __init__(self):
-        super(AbstractModelComponent, self).__init__()
-
-    def new(self, filename):
-
-
-    def export(self, filename):

src/Model/BoundaryCondition/BoundaryCondition.py

@@ -20,17 +20,18 @@ import logging
 
 from tools import trace, timer, old_pamhyr_date_to_timestamp
 
-from Model.DB import SQLSubModel
+from Model.Tools.PamhyrDB import SQLSubModel
 from Model.Except import NotImplementedMethodeError
 
 logger = logging.getLogger()
 
+
 class BoundaryCondition(SQLSubModel):
     _sub_classes = []
     _id_cnt = 0
 
-    def __init__(self, id:int = -1, name:str = "",
+    def __init__(self, id: int = -1, name: str = "",
-                 status = None):
+                 status=None):
         super(BoundaryCondition, self).__init__()
 
         self._status = status
@@ -101,7 +102,7 @@ class BoundaryCondition(SQLSubModel):
         return res
 
     @classmethod
-    def _sql_load(cls, execute, data = None):
+    def _sql_load(cls, execute, data=None):
         new = []
         tab = data["tab"]
 
@@ -115,9 +116,9 @@ class BoundaryCondition(SQLSubModel):
             t = row[2]
             ctor = cls._get_ctor_from_type(t)
             bc = ctor(
-                id = row[0],
+                id=row[0],
-                name = row[1],
+                name=row[1],
-                status = data['status']
+                status=data['status']
             )
 
             bc.node = None
@@ -143,7 +144,7 @@ class BoundaryCondition(SQLSubModel):
 
         return new
 
-    def _sql_save(self, execute, data = None):
+    def _sql_save(self, execute, data=None):
         tab = data["tab"]
 
         execute(f"DELETE FROM boundary_condition WHERE id = {self.id}")
@@ -155,7 +156,7 @@ class BoundaryCondition(SQLSubModel):
 
         sql = (
             "INSERT INTO " +
-            "boundary_condition(id, name, type, tab, node) "+
+            "boundary_condition(id, name, type, tab, node) " +
             "VALUES (" +
             f"{self.id}, '{self._sql_format(self._name)}', " +
             f"'{self._sql_format(self._type)}', '{tab}', {node}" +
@@ -170,7 +171,7 @@ class BoundaryCondition(SQLSubModel):
 
             sql = (
                 "INSERT INTO " +
-                "boundary_condition_data(ind, data0, data1, bc) "+
+                "boundary_condition_data(ind, data0, data1, bc) " +
                 f"VALUES ({ind}, '{data0}', {data1}, {self.id})"
             )
             execute(sql)
@@ -187,7 +188,7 @@ class BoundaryCondition(SQLSubModel):
 
     @classmethod
     def time_convert(cls, data):
-        if type(data) == str and data.count(":") == 3:
+        if data is str and data.count(":") == 3:
             return old_pamhyr_date_to_timestamp(data)
 
         return int(data)
@@ -246,7 +247,7 @@ class BoundaryCondition(SQLSubModel):
         new_1 = self._default_1
 
         if len(header) != 0:
-            for i in [0,1]:
+            for i in [0, 1]:
                 for j in range(len(header)):
                     if self._header[i] == header[j]:
                         if i == 0:
@@ -259,13 +260,13 @@ class BoundaryCondition(SQLSubModel):
 
         return (new_0, new_1)
 
-    def add(self, index:int):
+    def add(self, index: int):
         value = (self._default_0, self._default_1)
         self._data.insert(index, value)
         self._status.modified()
         return value
 
-    def insert(self, index:int, value):
+    def insert(self, index: int, value):
         self._data.insert(index, value)
         self._status.modified()
 
@@ -301,11 +302,10 @@ class BoundaryCondition(SQLSubModel):
         return self.data[index]
 
     def get_range(self, _range):
-        l = []
+        lst = []
         for r in _range:
-            l.append(r)
+            lst.append(r)
-        return l
+        return lst
-
 
     def _set_i_c_v(self, index, column, value):
         v = list(self._data[index])
@@ -313,22 +313,22 @@ class BoundaryCondition(SQLSubModel):
         self._data[index] = tuple(v)
         self._status.modified()
 
-    def set_i_0(self, index:int, value):
+    def set_i_0(self, index: int, value):
         self._set_i_c_v(index, 0, value)
 
-    def set_i_1(self, index:int, value):
+    def set_i_1(self, index: int, value):
         self._set_i_c_v(index, 1, value)
 
     @timer
     def convert(self, cls):
-        new = cls(name = self.name, status = self._status)
+        new = cls(name=self.name, status=self._status)
         new.node = self.node
 
         for i, _ in enumerate(self.data):
             new.add(i)
 
-        for i in [0,1]:
+        for i in [0, 1]:
-            for j in [0,1]:
+            for j in [0, 1]:
                 if self._header[i] == new.header[j]:
                     for ind, v in self.data:
                         try:

src/Model/BoundaryCondition/BoundaryConditionList.py

@@ -19,7 +19,7 @@
 from copy import copy
 from tools import trace, timer
 
-from Model.DB import SQLSubModel
+from Model.Tools.PamhyrList import PamhyrModelListWithTab
 from Model.Except import NotImplementedMethodeError
 
 from Model.BoundaryCondition.BoundaryCondition import BoundaryCondition
@@ -30,33 +30,16 @@ from Model.BoundaryCondition.BoundaryConditionTypes import (
     Solid,
 )
 
-class BoundaryConditionList(SQLSubModel):
+
+class BoundaryConditionList(PamhyrModelListWithTab):
+    _tabs_list = ["liquid", "solid", "suspenssion"]
     _sub_classes = [
         BoundaryCondition,
     ]
 
-    def __init__(self, status = None):
-        super(BoundaryConditionList, self).__init__()
-
-        self._status = status
-
-        self._tabs = {
-            "liquid" : [],
-            "solid" : [],
-            "suspenssion" : []
-        }
-
     @classmethod
-    def _sql_create(cls, execute):
+    def _sql_load(cls, execute, data=None):
-        return cls._create_submodel(execute)
+        new = cls(status=data['status'])
-
-    @classmethod
-    def _sql_update(cls, execute, version):
-        return True
-
-    @classmethod
-    def _sql_load(cls, execute, data = None):
-        new = cls(status = data['status'])
 
         if data is None:
             data = {}
@@ -69,7 +52,7 @@ class BoundaryConditionList(SQLSubModel):
 
         return new
 
-    def _sql_save(self, execute, data = None):
+    def _sql_save(self, execute, data=None):
         execute("DELETE FROM boundary_condition")
 
         if data is None:
@@ -78,83 +61,29 @@ class BoundaryConditionList(SQLSubModel):
         for tab in self._tabs:
             data["tab"] = tab
             for bc in self._tabs[tab]:
-                bc._sql_save(execute, data = data)
+                bc._sql_save(execute, data=data)
 
         return True
 
-    def len(self, lst):
-        return len(self._tabs[lst])
-
-    def get_tab(self, lst):
-        return self._tabs[lst].copy()
-
-    def get(self, lst, row):
-        return self._tabs[lst][row]
-
-    def set(self, lst, row, new):
-        self._tabs[lst][row] = new
-        self._status.modified()
-
     def new(self, lst, index):
         n = NotDefined(status=self._status)
         self._tabs[lst].insert(index, n)
         self._status.modified()
         return n
 
-    def insert(self, lst, index, new):
-        self._tabs[lst].insert(index, new)
-        self._status.modified()
-
-    def delete(self, lst, bcs):
-        for bc in bcs:
-            self._tabs[lst].remove(bc)
-        self._status.modified()
-
-    def delete_i(self, lst, indexes):
-        bcs = list(
-            map(
-                lambda x: x[1],
-                filter(
-                    lambda x: x[0] in indexes,
-                    enumerate(self._tabs[lst])
-                )
-            )
-        )
-        self.delete(lst, bcs)
-
-    def sort(self, lst, reverse=False, key=None):
-        self._tabs[lst].sort(reverse=reverse, key=key)
-        self._status.modified()
-
-    def move_up(self, lst, index):
-        if index < len(self._tabs[lst]):
-            next = index - 1
-
-            l = self._tabs[lst]
-            l[index], l[next] = l[next], l[index]
-            self._status.modified()
-
-    def move_down(self, lst, index):
-        if index >= 0:
-            prev = index + 1
-
-            l = self._tabs[lst]
-            l[index], l[prev] = l[prev], l[index]
-            self._status.modified()
-
     def __copy__(self):
         new = BoundaryConditionList()
 
-        for l in self._tabs:
+        for lst in self._tabs:
-            new.tabs[l] = self._tabs[l].copy()
+            new.tabs[lst] = self._tabs[lst].copy()
 
         return new
 
     def __deepcopy__(self):
         new = BoundaryConditionList()
 
-        for l in self._tabs:
+        for lst in self._tabs:
-            new.tabs[l] = self._tabs[l].deepcopy()
+            new.tabs[lst] = self._tabs[lst].deepcopy()
 
         return new
 

src/Model/BoundaryCondition/BoundaryConditionTypes.py

@@ -22,7 +22,7 @@ from Model.BoundaryCondition.BoundaryCondition import BoundaryCondition
 
 
 class NotDefined(BoundaryCondition):
-    def __init__(self, id:int = -1, name:str = "", status = None):
+    def __init__(self, id: int = -1, name: str = "", status=None):
         super(NotDefined, self).__init__(id=id, name=name, status=status)
 
         self._type = "ND"
@@ -32,9 +32,11 @@ class NotDefined(BoundaryCondition):
     def _default_0(self):
         return 0.0
 
+
 class PonctualContribution(BoundaryCondition):
-    def __init__(self, id:int = -1, name:str = "", status = None):
+    def __init__(self, id: int = -1, name: str = "", status=None):
-        super(PonctualContribution, self).__init__(id=id, name=name, status=status)
+        super(PonctualContribution, self).__init__(
+            id=id, name=name, status=status)
 
         self._type = "PC"
         self._header = ["time", "discharge"]
@@ -44,8 +46,9 @@ class PonctualContribution(BoundaryCondition):
     def compatibility(cls):
         return ["liquid"]
 
+
 class TimeOverZ(BoundaryCondition):
-    def __init__(self, id:int = -1, name:str = "", status = None):
+    def __init__(self, id: int = -1, name: str = "", status=None):
         super(TimeOverZ, self).__init__(id=id, name=name, status=status)
 
         self._type = "TZ"
@@ -56,9 +59,11 @@ class TimeOverZ(BoundaryCondition):
     def compatibility(cls):
         return ["liquid"]
 
+
 class TimeOverDischarge(BoundaryCondition):
-    def __init__(self, id:int = -1, name:str = "", status = None):
+    def __init__(self, id: int = -1, name: str = "", status=None):
-        super(TimeOverDischarge, self).__init__(id=id, name=name, status=status)
+        super(TimeOverDischarge, self).__init__(
+            id=id, name=name, status=status)
 
         self._type = "TD"
         self._header = ["time", "discharge"]
@@ -68,8 +73,9 @@ class TimeOverDischarge(BoundaryCondition):
     def compatibility(cls):
         return ["liquid"]
 
+
 class ZOverDischarge(BoundaryCondition):
-    def __init__(self, id:int = -1, name:str = "", status = None):
+    def __init__(self, id: int = -1, name: str = "", status=None):
         super(ZOverDischarge, self).__init__(id=id, name=name, status=status)
 
         self._type = "ZD"
@@ -86,7 +92,7 @@ class ZOverDischarge(BoundaryCondition):
 
 
 class Solid(BoundaryCondition):
-    def __init__(self, id:int = -1, name:str = "", status = None):
+    def __init__(self, id: int = -1, name: str = "", status=None):
         super(Solid, self).__init__(id=id, name=name, status=status)
 
         self.d50 = 0.002

src/Model/Except.py

@@ -45,8 +45,9 @@ def exception_message_box(exception):
 # Custom error #
 ################
 
+
 class ExeceptionWithMessageBox(Exception):
-    def __init__(self, title = "Exeception"):
+    def __init__(self, title="Exeception"):
         self.title = title
 
     def header(self):
@@ -72,7 +73,7 @@ class ExeceptionWithMessageBox(Exception):
 class NotImplementedMethodeError(ExeceptionWithMessageBox):
     def __init__(self, obj, func):
         super(NotImplementedMethodeError, self).__init__(
-            title = _translate("Exception", "Method not implemented")
+            title=_translate("Exception", "Method not implemented")
         )
 
         self.obj = obj
@@ -81,12 +82,16 @@ class NotImplementedMethodeError(ExeceptionWithMessageBox):
         self.alert()
 
     def __str__(self):
+        class_type = self.obj
+        if self.obj.__class__ != type:
+            class_type = self.obj.__class__
+
         return (
             _translate("Exception", "Method") +
             f" '{self.func.__name__}' " +
             _translate("Exception", "not implemented") +
             _translate("Exception", "for class") +
-            f" '{self.obj.__class__ if self.obj.__class__ != type else self.obj}'"
+            f" '{class_type}'"
         )
 
     def header(self):
@@ -104,10 +109,11 @@ class NotImplementedMethodeError(ExeceptionWithMessageBox):
             f" '{self.obj.__class__}'"
         )
 
+
 class FileFormatError(ExeceptionWithMessageBox):
     def __init__(self, filename, reason):
         super(FileFormatError, self).__init__(
-            title = _translate("Exception", "FileFormatError")
+            title=_translate("Exception", "FileFormatError")
         )
 
         self.reason = reason
@@ -137,7 +143,7 @@ class FileFormatError(ExeceptionWithMessageBox):
 class ClipboardFormatError(ExeceptionWithMessageBox):
     def __init__(self, mime=None, header=None, data=None):
         super(ClipboardFormatError, self).__init__(
-            title = _translate("Exception", "Clipboard format error")
+            title=_translate("Exception", "Clipboard format error")
         )
 
         self._mime = mime

src/Model/Friction/Friction.py

@@ -18,10 +18,11 @@
 
 from tools import trace, timer
 
-from Model.DB import SQLSubModel
+from Model.Tools.PamhyrDB import SQLSubModel
+
 
 class Friction(SQLSubModel):
-    def __init__(self, name:str = "", status = None):
+    def __init__(self, name: str = "", status=None):
         super(Friction, self).__init__()
 
         self._status = status
@@ -57,7 +58,7 @@ class Friction(SQLSubModel):
         return True
 
     @classmethod
-    def _sql_load(cls, execute, data = None):
+    def _sql_load(cls, execute, data=None):
         new = []
         reach = data["parent"]  # Reach object
         status = data["status"]
@@ -78,22 +79,21 @@ class Friction(SQLSubModel):
             es = next(filter(lambda s: s.id == row[4], stricklers))
 
             # Create friction
-            sec = cls(status = status)
+            sec = cls(status=status)
             sec.edge = reach
             sec.begin_kp = row[1]
             sec.end_kp = row[2]
             sec.begin_strickler = bs
             sec.end_strickler = es
 
-            new[ind] = sec
+            yield ind, sec
 
-        return new
+    def _sql_save(self, execute, data=None):
-
-    def _sql_save(self, execute, data = None):
         ind = data["ind"]
         execute(
             "INSERT INTO " +
-            "friction(ind, begin_kp, end_kp, reach, begin_strickler, end_strickler) " +
+            "friction(ind, begin_kp, end_kp, " +
+            "reach, begin_strickler, end_strickler) " +
             "VALUES (" +
             f"{ind}, {self._begin_kp}, {self._end_kp}, " +
             f"{self._edge.id}, " +
@@ -121,7 +121,7 @@ class Friction(SQLSubModel):
         self._edge = edge
         if (edge is not None and
             self._begin_kp == 0.0 and
-            self._end_kp == 0.0):
+                self._end_kp == 0.0):
             self._begin_kp = self._edge.reach.get_kp_min()
             self._end_kp = self._edge.reach.get_kp_max()
         self._status.modified()

src/Model/Friction/FrictionList.py

@@ -21,26 +21,19 @@ import logging
 from copy import copy
 from tools import trace, timer
 
-from Model.DB import SQLSubModel
+from Model.Tools.PamhyrDB import SQLSubModel
+from Model.Tools.PamhyrList import PamhyrModelList
+
 from Model.Friction.Friction import Friction
 
 logger = logging.getLogger()
 
-class FrictionList(SQLSubModel):
+
+class FrictionList(PamhyrModelList):
     _sub_classes = [
         Friction
     ]
 
-    def __init__(self, status = None):
-        super(FrictionList, self).__init__()
-
-        self._status = status
-        self._frictions = []
-
-    @classmethod
-    def _sql_create(cls, execute):
-        return cls._create_submodel(execute)
-
     @classmethod
     def _sql_update_0_0_1(cls, execute, version):
         execute("ALTER TABLE `section` RENAME TO `friction`")
@@ -54,85 +47,54 @@ class FrictionList(SQLSubModel):
         return True
 
     @classmethod
-    def _sql_load(cls, execute, data = None):
+    def _sql_load(cls, execute, data=None):
-        new = cls(status = data['status'])
+        new = cls(status=data['status'])
 
-        new._frictions = Friction._sql_load(
+        new._lst = Friction._sql_load(
             execute, data
         )
 
         return new
 
-    def _sql_save(self, execute, data = None):
+    def _sql_save(self, execute, data=None):
         reach = data["reach"]
         execute(f"DELETE FROM friction WHERE reach = {reach.id}")
 
         ok = True
         ind = 0
-        for friction in self._frictions:
+        for friction in self._lst:
             data["ind"] = ind
-            ok &= friction._sql_save(execute, data = data)
+            ok &= friction._sql_save(execute, data=data)
             ind += 1
 
         return ok
 
-    def __len__(self):
+    def _get_frictions_list(self):
-        return len(self._frictions)
+        # Frictions list generator is type (int, Point) with the first
-
+        # element the index of the Point in list
-    @property
+        return list(
-    def frictions(self):
-        return self._frictions.copy()
-
-    def get(self, row):
-        return self._frictions[row]
-
-    def set(self, row, new):
-        self._frictions[row] = new
-        self._status.modified()
-
-    def new(self, index):
-        n = Friction(status = self._status)
-        self._frictions.insert(index, n)
-        self._status.modified()
-        return n
-
-    def insert(self, index, new):
-        self._frictions.insert(index, new)
-        self._status.modified()
-
-    def delete(self, frictions):
-        for friction in frictions:
-            self._frictions.remove(friction)
-        self._status.modified()
-
-    def delete_i(self, indexes):
-        frictions = list(
             map(
-                lambda x: x[1],
+                lambda p: p[1],
-                filter(
+                sorted(
-                    lambda x: x[0] in indexes,
+                    self._lst,
-                    enumerate(self._frictions)
+                    key=lambda p: p[0]
                 )
             )
         )
-        self.delete(frictions)
 
-    def sort(self, reverse=False, key=None):
+    @property
-        self._frictions.sort(reverse=reverse, key=key)
+    def lst(self):
+        if not isinstance(self._lst, list):
+            self._lst = self._get_frictions_list()
+
+        return self._lst
+
+    @property
+    def frictions(self):
+        return self.lst
+
+    def new(self, index):
+        n = Friction(status=self._status)
+        self._lst.insert(index, n)
         self._status.modified()
-
+        return n
-    def move_up(self, index):
-        if index < len(self._frictions):
-            next = index - 1
-
-            l = self._frictions
-            l[index], l[next] = l[next], l[index]
-            self._status.modified()
-
-    def move_down(self, index):
-        if index >= 0:
-            prev = index + 1
-
-            l = self._frictions
-            l[index], l[prev] = l[prev], l[index]
-            self._status.modified()

src/Model/Geometry/Point.py

@@ -18,8 +18,9 @@
 
 from Model.Except import NotImplementedMethodeError
 
+
 class Point(object):
-    def __init__(self, name:str = "", profile=None, status = None):
+    def __init__(self, name: str = "", profile=None, status=None):
         super(Point, self).__init__()
 
         self._status = status
@@ -28,7 +29,6 @@ class Point(object):
         self._profile = profile
         self._sl = None
 
-
     @property
     def sl(self):
         if self._sl is None:
@@ -40,8 +40,8 @@ class Point(object):
     def sl(self, sl):
         if sl == self._profile.sl:
             self._sl = None
-
+        else:
-        self._sl = sl
+            self._sl = sl
 
     @property
     def name(self):

src/Model/Geometry/PointXY.py

@@ -20,10 +20,11 @@ from math import dist
 
 from Model.Geometry.Point import Point
 
+
 class PointAC(Point):
-    def __init__(self, a:float = 0.0, c:float = 0.0,
+    def __init__(self, a: float = 0.0, c: float = 0.0,
-                 name: str = "", status = None):
+                 name: str = "", status=None):
-        super(PointXY, self).__init__(name = name, status = status)
+        super(PointXY, self).__init__(name=name, status=status)
 
         self._a = float(a)
         self._c = float(c)

src/Model/Geometry/PointXYZ.py

@@ -19,15 +19,17 @@
 from math import dist
 import numpy as np
 
-from Model.DB import SQLSubModel
+from Model.Tools.PamhyrDB import SQLSubModel
 from Model.Geometry.Point import Point
 
+
 class PointXYZ(Point, SQLSubModel):
     _sub_classes = []
 
-    def __init__(self, x:float = 0.0, y:float = 0.0, z:float = 0.0,
+    def __init__(self, x: float = 0.0, y: float = 0.0, z: float = 0.0,
-                 name:str = "", profile = None, status = None):
+                 name: str = "", profile=None, status=None):
-        super(PointXYZ, self).__init__(name=name, profile=profile, status=status)
+        super(PointXYZ, self).__init__(
+            name=name, profile=profile, status=status)
 
         self._x = float(x)
         self._y = float(y)
@@ -69,9 +71,7 @@ class PointXYZ(Point, SQLSubModel):
         return True
 
     @classmethod
-    def _sql_load(cls, execute, data = None):
+    def _sql_load(cls, execute, data=None):
-        points = []
-
         status = data["status"]
         profile = data["profile"]
 
@@ -81,10 +81,6 @@ class PointXYZ(Point, SQLSubModel):
             f"WHERE profile = {profile.id}"
         )
 
-        # Create points list
-        for _ in table:
-            points.append(None)
-
         # Fill points list with new point
         for row in table:
             ind = row[0]
@@ -95,13 +91,13 @@ class PointXYZ(Point, SQLSubModel):
             sl = row[5]
 
             new = cls(
-                name = name,
+                name=name,
-                x = x, y = y, z = z,
+                x=x, y=y, z=z,
-                profile = profile,
+                profile=profile,
-                status = status
+                status=status
             )
 
-            if sl == -1 or sl == None:
+            if sl == -1 or sl is None:
                 new._sl = None
             else:
                 new._sl = next(
@@ -111,11 +107,9 @@ class PointXYZ(Point, SQLSubModel):
                     )
                 )
 
-            points[ind] = new
+            yield ind, new
 
-        return points
+    def _sql_save(self, execute, data=None):
-
-    def _sql_save(self, execute, data = None):
         profile = data["profile"]
         ind = data["ind"]
 
@@ -123,7 +117,7 @@ class PointXYZ(Point, SQLSubModel):
 
         sql = (
             "INSERT OR REPLACE INTO " +
-            "geometry_pointXYZ(ind, name, x, y, z, profile, sl) "+
+            "geometry_pointXYZ(ind, name, x, y, z, profile, sl) " +
             "VALUES (" +
             f"{ind}, '{self._sql_format(self._name)}', " +
             f"{self.x}, {self.y}, {self.z}, " +
@@ -134,7 +128,6 @@ class PointXYZ(Point, SQLSubModel):
 
         return True
 
-
     @classmethod
     def from_data(cls, header, data):
         point = None
@@ -157,7 +150,6 @@ class PointXYZ(Point, SQLSubModel):
 
         return point
 
-
     def __repr__(self):
         return f"({self._x}, {self._y}, {self._z}, {self._name})"
 

src/Model/Geometry/Profile.py

@@ -25,14 +25,15 @@ from Model.Except import NotImplementedMethodeError
 
 logger = logging.getLogger()
 
+
 class Profile(object):
     _id_cnt = 0
 
-    def __init__(self, id:int = -1, num:int = 0,
+    def __init__(self, id: int = -1, num: int = 0,
-                 kp:float = 0.0, name:str = "",
+                 kp: float = 0.0, name: str = "",
-                 code1:int = 0, code2:int = 0,
+                 code1: int = 0, code2: int = 0,
-                 _type:str = "", reach = None,
+                 _type: str = "", reach=None,
-                 status = None):
+                 status=None):
         super(Profile, self).__init__()
 
         self._status = status
@@ -56,16 +57,35 @@ class Profile(object):
 
         self._profile_type = _type
 
+    def __len__(self):
+        return len(self.points)
+
     @property
     def number_points(self):
-        return len(self._points)
+        return len(self.points)
+
+    def _get_points_list(self):
+        # Points list generator is type (int, Point) with the first
+        # element the index of the Point in list
+        return list(
+            map(
+                lambda p: p[1],
+                sorted(
+                    self._points,
+                    key=lambda p: p[0]
+                )
+            )
+        )
 
     @property
     def points(self):
-        return self._points.copy()
+        if not isinstance(self._points, list):
+            self._points = self._get_points_list()
+
+        return self._points
 
     def point(self, index):
-        return self._points[index]
+        return self.points[index]
 
     @property
     def reach(self):
@@ -112,7 +132,7 @@ class Profile(object):
 
     @property
     def nb_points(self):
-        return len(self._points)
+        return len(self.points)
 
     @property
     def kp(self):
@@ -166,9 +186,9 @@ class Profile(object):
         self._profile_type = value
         self._status.modified()
 
-    def point(self, i:int):
+    def point(self, i: int):
-        if i < len(self._points):
+        if i < len(self.points):
-            return self._points[i]
+            return self.points[i]
 
         return None
 
@@ -178,11 +198,10 @@ class Profile(object):
         Returns:
             The list of named point
         """
-        return [point for point in self._points
+        return [point for point in self.points
                 if point.point_is_named()]
 
-
+    def insert_point(self, index: int, point: Point):
-    def insert_point(self, index: int, point:Point):
         """Insert point at index.
 
         Args:
@@ -192,10 +211,9 @@ class Profile(object):
         Returns:
             Nothing.
         """
-        self._points.insert(index, point)
+        self.points.insert(index, point)
         self._status.modified()
 
-
     def delete(self, indexes: int):
         """Delete points at index
 
@@ -215,7 +233,7 @@ class Profile(object):
             )
         )
 
-        self._points = list(
+        self.points = list(
             filter(
                 lambda p: p not in points,
                 self.points
@@ -232,7 +250,7 @@ class Profile(object):
         Returns:
             Nothing.
         """
-        self._points = list(
+        self.points = list(
             filter(
                 lambda p: p not in points,
                 self.points
@@ -243,10 +261,10 @@ class Profile(object):
     # Move
 
     def move_up_point(self, index: int):
-        if index < len(self._points):
+        if index < len(self.points):
             next = index - 1
 
-            p = self._points
+            p = self.points
             p[index], p[next] = p[next], p[index]
             self._status.modified()
 
@@ -254,7 +272,7 @@ class Profile(object):
         if index >= 0:
             prev = index + 1
 
-            p = self._points
+            p = self.points
             p[index], p[prev] = p[prev], p[index]
             self._status.modified()
 
@@ -262,14 +280,14 @@ class Profile(object):
 
     @timer
     def sort(self, column, is_reversed: bool = False):
-        predicate = lambda p: p.x
+        def predicate(p): return p.x
         if column == 'y':
-            predicate = lambda p: p.y
+            def predicate(p): return p.y
         elif column == 'z':
-            predicate = lambda p: p.z
+            def predicate(p): return p.z
 
-        self._points = sorted(
+        self.points = sorted(
-            self._points,
+            self.points,
             key=predicate,
             reverse=is_reversed
         )
@@ -277,10 +295,10 @@ class Profile(object):
 
     @timer
     def sort_with_indexes(self, indexes: list):
-        if len(self._points) != len(indexes):
+        if len(self.points) != len(indexes):
             logger.critical("Indexes list do not correspond to point list")
 
-        self._points = list(
+        self.points = list(
             map(
                 lambda x: x[1],
                 sorted(

src/Model/Geometry/ProfileXYZ.py

@@ -16,17 +16,21 @@
 
 # -*- coding: utf-8 -*-
 
+import logging
 import numpy as np
 from typing import List
 
 from tools import timer
 
-from Model.DB import SQLSubModel
+from Model.Tools.PamhyrDB import SQLSubModel
 from Model.Except import ClipboardFormatError
 from Model.Geometry.Profile import Profile
 from Model.Geometry.PointXYZ import PointXYZ
 from Model.Geometry.Vector_1d import Vector1d
 
+logger = logging.getLogger()
+
+
 class ProfileXYZ(Profile, SQLSubModel):
     _sub_classes = [
         PointXYZ,
@@ -36,11 +40,11 @@ class ProfileXYZ(Profile, SQLSubModel):
                  id: int = -1,
                  name: str = "",
                  kp: float = 0.,
-                 reach = None,
+                 reach=None,
-                 num = 0,
+                 num=0,
                  nb_point: int = 0,
                  code1: int = 0, code2: int = 0,
-                 status = None):
+                 status=None):
         """ProfileXYZ constructor
 
         Args:
@@ -54,14 +58,14 @@ class ProfileXYZ(Profile, SQLSubModel):
             Nothing.
         """
         super(ProfileXYZ, self).__init__(
-            id = id,
+            id=id,
-            num = num,
+            num=num,
-            name = name,
+            name=name,
-            kp = kp,
+            kp=kp,
-            code1 = code1, code2 = code2,
+            code1=code1, code2=code2,
-            _type = "XYZ",
+            _type="XYZ",
-            reach = reach,
+            reach=reach,
-            status = status,
+            status=status,
         )
 
     @classmethod
@@ -100,7 +104,7 @@ class ProfileXYZ(Profile, SQLSubModel):
         return cls._update_submodel(execute, version)
 
     @classmethod
-    def _sql_load(cls, execute, data = None):
+    def _sql_load(cls, execute, data=None):
         profiles = []
         status = data["status"]
         reach = data["reach"]
@@ -108,7 +112,7 @@ class ProfileXYZ(Profile, SQLSubModel):
         table = execute(
             "SELECT id, ind, name, kp, num, code1, code2, sl " +
             "FROM geometry_profileXYZ " +
-            f"WHERE reach = {reach}"
+            f"WHERE reach = {reach.id}"
         )
 
         for _ in table:
@@ -125,14 +129,14 @@ class ProfileXYZ(Profile, SQLSubModel):
             sl = row[7]
 
             new = cls(
-                id=id, num = num,
+                id=id, num=num,
-                name = name, kp = kp,
+                name=name, kp=kp,
-                code1 = code1, code2 = code2,
+                code1=code1, code2=code2,
-                reach = data["parent"],
+                reach=data["parent"],
-                status = status
+                status=status
             )
 
-            if sl == -1 or sl == None:
+            if sl == -1 or sl is None:
                 new._sl = None
             else:
                 new._sl = next(
@@ -143,13 +147,15 @@ class ProfileXYZ(Profile, SQLSubModel):
                 )
 
             data["profile"] = new
-            new._points = PointXYZ._sql_load(execute, data)
+            new._points = PointXYZ._sql_load(execute, data.copy())
 
-            profiles[ind] = new
+            yield ind, new
 
-        return profiles
+        #     profiles[ind] = new
 
-    def _sql_save(self, execute, data = None):
+        # return profiles
+
+    def _sql_save(self, execute, data=None):
         ok = True
         ind = data["ind"]
 
@@ -157,7 +163,8 @@ class ProfileXYZ(Profile, SQLSubModel):
 
         sql = (
             "INSERT OR REPLACE INTO " +
-            "geometry_profileXYZ(id, ind, name, reach, kp, num, code1, code2, sl) "+
+            "geometry_profileXYZ(id, ind, name, reach, " +
+            "kp, num, code1, code2, sl) " +
             "VALUES (" +
             f"{self.id}, {ind}, '{self._sql_format(self._name)}', " +
             f"{self.reach.id}, {self.kp}, {self.num}, " +
@@ -170,7 +177,7 @@ class ProfileXYZ(Profile, SQLSubModel):
         execute(f"DELETE FROM geometry_pointXYZ WHERE profile = {self.id}")
 
         ind = 0
-        for point in self._points:
+        for point in self.points:
             data["ind"] = ind
             ok &= point._sql_save(execute, data)
             ind += 1
@@ -220,18 +227,17 @@ class ProfileXYZ(Profile, SQLSubModel):
 
         return point
 
-
     def x(self):
-        return [point.x for point in self._points]
+        return [point.x for point in self.points]
 
     def y(self):
-        return [point.y for point in self._points]
+        return [point.y for point in self.points]
 
     def z(self):
-        return [point.z for point in self._points]
+        return [point.z for point in self.points]
 
     def names(self):
-        return [point.name for point in self._points]
+        return [point.name for point in self.points]
 
     def x_max(self):
         return max(self.filter_isnan(self.x()))
@@ -262,7 +268,7 @@ class ProfileXYZ(Profile, SQLSubModel):
         """
         for point in list_points:
             pt = PointXYZ(*point, profile=self, status=self._status)
-            self._points.append(pt)
+            self.points.append(pt)
         self._status.modified()
 
     def get_point_i(self, index: int) -> PointXYZ:
@@ -275,7 +281,7 @@ class ProfileXYZ(Profile, SQLSubModel):
             The point.
         """
         try:
-            return self._points[index]
+            return self.points[index]
         except IndexError:
             raise IndexError(f"Invalid point index: {index}")
 
@@ -286,7 +292,7 @@ class ProfileXYZ(Profile, SQLSubModel):
             Nothing.
         """
         point_xyz = PointXYZ(0., 0., 0., profile=self, status=self._status)
-        self._points.append(point_xyz)
+        self.points.append(point_xyz)
         self._status.modified()
 
     def insert(self, index: int):
@@ -299,7 +305,7 @@ class ProfileXYZ(Profile, SQLSubModel):
             The new point.
         """
         point = PointXYZ(0., 0., 0., profile=self, status=self._status)
-        self._points.insert(index, point)
+        self.points.insert(index, point)
         self._status.modified()
         return point
 
@@ -315,9 +321,9 @@ class ProfileXYZ(Profile, SQLSubModel):
         return [x for x in lst if not np.isnan(x)]
 
     def _first_point_not_nan(self):
-        first_point = self._points[0]
+        first_point = self.points[0]
 
-        for point in self._points:
+        for point in self.points:
             if not point.is_nan():
                 first_point = point
                 break
@@ -325,9 +331,9 @@ class ProfileXYZ(Profile, SQLSubModel):
         return first_point
 
     def _last_point_not_nan(self):
-        last_point = self._points[-1]
+        last_point = self.points[-1]
 
-        for point in self._points[::-1]:
+        for point in self.points[::-1]:
             if not point.is_nan():
                 last_point = point
                 break
@@ -354,13 +360,13 @@ class ProfileXYZ(Profile, SQLSubModel):
             first_point_not_nan = self._first_point_not_nan()
             last_point_not_nan = self._last_point_not_nan()
 
-            for index, point in enumerate(self._points):
+            for index, point in enumerate(self.points):
                 if point.point_is_named():
                     index_first_named_point = index
                     first_named_point = point
                     break
 
-            for point in reversed(self._points):
+            for point in reversed(self.points):
                 if point.point_is_named():
                     last_named_point = point
                     break
@@ -369,32 +375,32 @@ class ProfileXYZ(Profile, SQLSubModel):
             constant = 0.0
 
             if (first_named_point is not None and
-                last_named_point is not None):
+                    last_named_point is not None):
                 if (first_named_point != last_named_point and
-                    first_named_point.x != last_named_point.x):
+                        first_named_point.x != last_named_point.x):
                     vector = Vector1d(first_named_point, last_named_point)
-                    normalized_direction_vec = vector.normalized_direction_vector()
+                    norm_dir_vec = vector.normalized_direction_vector()
                 else:
                     vector = Vector1d(first_point_not_nan, last_point_not_nan)
-                    normalized_direction_vec = vector.normalized_direction_vector()
+                    norm_dir_vec = vector.normalized_direction_vector()
 
-                for point in self._points:
+                for point in self.points:
                     xi = point.x - first_named_point.x
                     yi = point.y - first_named_point.y
-                    station_i = (normalized_direction_vec[0] * xi +
+                    station_i = (norm_dir_vec[0] * xi +
-                                 normalized_direction_vec[1] * yi)
+                                 norm_dir_vec[1] * yi)
                     station.append(station_i)
 
                 constant = station[index_first_named_point]
             elif first_named_point is None:
                 vector = Vector1d(first_point_not_nan, last_point_not_nan)
-                normalized_direction_vec = vector.normalized_direction_vector()
+                norm_dir_vec = vector.normalized_direction_vector()
 
-                for point in self._points:
+                for point in self.points:
                     xi = point.x - first_point_not_nan.x
                     yi = point.y - first_point_not_nan.y
-                    station_i = (normalized_direction_vec[0] * xi +
+                    station_i = (norm_dir_vec[0] * xi +
-                                 normalized_direction_vec[1] * yi)
+                                 norm_dir_vec[1] * yi)
                     station.append(station_i)
 
                 z_min = self.z_min()

src/Model/Geometry/Reach.py

@@ -27,7 +27,7 @@ from functools import reduce
 
 from tools import flatten, timer, trace
 
-from Model.DB import SQLSubModel
+from Model.Tools.PamhyrDB import SQLSubModel
 
 from Model.Geometry.Profile import Profile
 from Model.Geometry.ProfileXYZ import ProfileXYZ
@@ -36,13 +36,14 @@ from Model.Except import FileFormatError, exception_message_box
 
 logger = logging.getLogger()
 
+
 class Reach(SQLSubModel):
     _sub_classes = [
         ProfileXYZ,
     ]
 
     def __init__(self, status=None, parent=None):
-        self.id = parent.id
+        self.id = parent.id if parent is not None else 0
         self._status = status
         self._parent = parent
         self._profiles: List[Profile] = []
@@ -59,17 +60,17 @@ class Reach(SQLSubModel):
         return cls._update_submodel(execute, version)
 
     @classmethod
-    def _sql_load(cls, execute, data = None):
+    def _sql_load(cls, execute, data=None):
-        new = cls(status = data["status"], parent = data["parent"])
+        new = cls(status=data["status"], parent=data["parent"])
 
         new._profiles = ProfileXYZ._sql_load(
             execute,
-            data = data
+            data=data
         )
 
         return new
 
-    def _sql_save(self, execute, data = None):
+    def _sql_save(self, execute, data=None):
         # Delete old data
         execute(f"DELETE FROM geometry_profileXYZ WHERE reach = {self.id}")
         # execute(f"DELETE FROM geometry_pointXYZ")
@@ -78,7 +79,7 @@ class Reach(SQLSubModel):
             data = {}
 
         ind = 0
-        for profile in self._profiles:
+        for profile in self.profiles:
             data["ind"] = ind
             profile._sql_save(execute, data)
             ind += 1
@@ -94,26 +95,49 @@ class Reach(SQLSubModel):
         Returns:
             The profile at index i
         """
-        if i < len(self._profiles):
+        if i < len(self.profiles):
-            return self._profiles[i]
+            return self.profiles[i]
 
         return None
 
     @property
     def name(self):
-        if self._parent == None:
+        if self._parent is None:
             return ""
 
         return self._parent.name
 
+    def _get_profiles_list(self):
+        # Profiles list generator is type (int, Point) with the first
+        # element the index of the Point in list
+        logger.info(f"Load profiles from reach {self.name}")
+        return list(
+            map(
+                lambda p: p[1],
+                sorted(
+                    self._profiles,
+                    key=lambda p: p[0]
+                )
+            )
+        )
+
+    def __len__(self):
+        if not isinstance(self._profiles, list):
+            self._profiles = self._get_profiles_list()
+
+        return len(self._profiles)
+
     @property
     def profiles(self):
-        return self._profiles.copy()
+        if not isinstance(self._profiles, list):
+            self._profiles = self._get_profiles_list()
+
+        return self._profiles
 
     def get_profiles_from_kp(self, kp):
         return list(
             filter(
-                lambda p: p.kp == kp, self._profiles
+                lambda p: p.kp == kp, self.profiles
             )
         )
 
@@ -123,14 +147,14 @@ class Reach(SQLSubModel):
         Returns:
             Number of profiles
         """
-        return len(self._profiles)
+        return len(self.profiles)
 
     def get_geometry(self) -> List[Profile]:
         """
         Returns:
             The profiles list.
         """
-        return self._profiles
+        return self.profiles
 
     def _update_profile_numbers(self):
         """Update profiles index
@@ -152,7 +176,7 @@ class Reach(SQLSubModel):
         """
         profile = ProfileXYZ(reach=self, status=self._status)
 
-        self._profiles.insert(index, profile)
+        self.profiles.insert(index, profile)
         self._update_profile_numbers()
 
         self._status.modified()
@@ -168,11 +192,10 @@ class Reach(SQLSubModel):
         Returns:
             Nothing.
         """
-        self._profiles.insert(index, profile)
+        self.profiles.insert(index, profile)
         self._update_profile_numbers()
         self._status.modified()
 
-
     def delete(self, indexes):
         """Delete some elements in profile list
 
@@ -192,7 +215,7 @@ class Reach(SQLSubModel):
             )
         )
 
-        self._profiles = list(
+        self.profiles = list(
             filter(
                 lambda p: p not in profiles,
                 self.profiles
@@ -210,7 +233,7 @@ class Reach(SQLSubModel):
         Returns:
             Nothing.
         """
-        self._profiles = list(
+        self.profiles = list(
             filter(
                 lambda p: p not in profiles,
                 self.profiles
@@ -219,12 +242,11 @@ class Reach(SQLSubModel):
         self._update_profile_numbers()
         self._status.modified()
 
-
     def move_up_profile(self, index: int):
         if index < len(self.profiles):
             next = index - 1
 
-            p = self._profiles
+            p = self.profiles
             p[index], p[next] = p[next], p[index]
             self._status.modified()
 
@@ -232,7 +254,7 @@ class Reach(SQLSubModel):
         if index >= 0:
             prev = index + 1
 
-            p = self._profiles
+            p = self.profiles
             p[index], p[prev] = p[prev], p[index]
             self._status.modified()
 
@@ -275,7 +297,6 @@ class Reach(SQLSubModel):
     def get_kp_max(self):
         return max(self.get_kp())
 
-
     # Sediment Layers
 
     def get_sl(self):
@@ -324,12 +345,12 @@ class Reach(SQLSubModel):
         for guide in guide_set:
             self._guidelines[guide] = flatten(
                 map(
-                    lambda l: list(
+                    lambda lst: list(
                         # Filter point with name (we assume we have
                         # only one point by profile)
                         filter(
                             lambda p: p.name == guide,
-                            l
+                            lst
                         )
                     ),
                     named_points
@@ -344,7 +365,7 @@ class Reach(SQLSubModel):
             Tuple of complete and incomplete guidelines name.
         """
         # Get all point contains into a guideline
-        named_points = [profile.named_points() for profile in self._profiles]
+        named_points = [profile.named_points() for profile in self.profiles]
         points_name = list(
             map(
                 lambda lst: list(map(lambda p: p.name, lst)),
@@ -364,7 +385,9 @@ class Reach(SQLSubModel):
             reduce(
                 lambda acc, h: acc + h,
                 map(
-                    lambda l: list(set(l).symmetric_difference(guide_set)),
+                    lambda lst: list(
+                        set(lst).symmetric_difference(guide_set)
+                    ),
                     points_name
                 ),
                 []
@@ -414,13 +437,12 @@ class Reach(SQLSubModel):
     def get_guidelines_z(self):
         return self._map_guidelines_points(lambda p: p.z)
 
-
     # Sort
 
     @timer
     def sort(self, is_reversed: bool = False):
-        self._profiles = sorted(
+        self.profiles = sorted(
-            self._profiles,
+            self.profiles,
             key=lambda profile: profile.kp,
             reverse=is_reversed
         )
@@ -428,10 +450,10 @@ class Reach(SQLSubModel):
 
     @timer
     def sort_with_indexes(self, indexes: list):
-        if len(self._profiles) != len(indexes):
+        if len(self.profiles) != len(indexes):
             logger.critical("Indexes list do not correspond to profile list")
 
-        self._profiles = list(
+        self.profiles = list(
             map(
                 lambda x: x[1],
                 sorted(
@@ -449,7 +471,8 @@ class Reach(SQLSubModel):
         """Import a geometry from file (.ST or .st)
 
         Args:
-            file_path_name: The absolute path of geometry file (.ST or .st) to import.
+            file_path_name: The absolute path of geometry file (.ST or .st)
+                            to import.
 
         Returns:
             Nothing.
@@ -459,7 +482,8 @@ class Reach(SQLSubModel):
 
         try:
             list_profile, list_header = self.read_file_st(str(file_path_name))
-            profile_header = ["num", "code1", "code2", "nb_point", "kp", "name"]
+            profile_header = ["num", "code1",
+                              "code2", "nb_point", "kp", "name"]
 
             if list_profile and list_header:
                 for ind, profile in enumerate(list_profile):
@@ -471,7 +495,7 @@ class Reach(SQLSubModel):
                         **d, reach=self, status=self._status
                     )
                     prof.import_points(profile)
-                    self._profiles.append(prof)
+                    self.profiles.append(prof)
                     self._update_profile_numbers()
 
                 self._status.modified()
@@ -535,8 +559,8 @@ class Reach(SQLSubModel):
     # TODO: Move this function to model reach
     def export_reach(self, filename):
         with open(f"{filename}", "w") as file_st:
-            for index in range(len(self._profiles)):
+            for index in range(len(self.profiles)):
-                profile = self._profiles[index]
+                profile = self.profiles[index]
 
                 for v in profile.header:
                     file_st.write(f"{v:>6}")

src/Model/Geometry/Vector_1d.py

@@ -19,6 +19,7 @@
 import numpy as np
 from Model.Geometry.PointXYZ import PointXYZ
 
+
 class Vector1d:
     def __init__(self, a: PointXYZ, b: PointXYZ):
         self.A = a

src/Model/InitialConditions/InitialConditions.py

@@ -20,14 +20,15 @@ from copy import copy, deepcopy
 from tools import trace, timer
 from functools import reduce
 
-from Model.DB import SQLSubModel
+from Model.Tools.PamhyrDB import SQLSubModel
+
 
 class Data(SQLSubModel):
-    def __init__(self, name:str = "",
+    def __init__(self, name: str = "",
-                 comment:str = "", reach = None,
+                 comment: str = "", reach=None,
-                 kp:float = 0.0, discharge:float = 0.0,
+                 kp: float = 0.0, discharge: float = 0.0,
-                 height:float = 0.0,
+                 height: float = 0.0,
-                 status = None):
+                 status=None):
         super(Data, self).__init__()
 
         self._status = status
@@ -73,7 +74,7 @@ class Data(SQLSubModel):
         return cls._update_submodel(execute, version)
 
     @classmethod
-    def _sql_load(cls, execute, data = None):
+    def _sql_load(cls, execute, data=None):
         id = data["reach"].id
         table = execute(
             "SELECT ind, name, comment, kp, discharge, height " +
@@ -95,25 +96,26 @@ class Data(SQLSubModel):
             height = row[5]
 
             d = cls(
-                reach = data["reach"],
+                reach=data["reach"],
-                status = data["status"],
+                status=data["status"],
-                name = name,
+                name=name,
-                comment = comment,
+                comment=comment,
-                kp = kp,
+                kp=kp,
-                discharge = discharge,
+                discharge=discharge,
-                height = height,
+                height=height,
             )
 
             new[ind] = d
 
         return new
 
-    def _sql_save(self, execute, data = None):
+    def _sql_save(self, execute, data=None):
         ind = data["ind"]
 
         execute(
             "INSERT INTO " +
-            "initial_conditions(ind, name, comment, kp, discharge, height, reach) " +
+            "initial_conditions(ind, name, comment, kp, " +
+            "discharge, height, reach) " +
             "VALUES (" +
             f"{ind}, '{self._sql_format(self.name)}', " +
             f"'{self._sql_format(self._comment)}', " +
@@ -124,16 +126,15 @@ class Data(SQLSubModel):
 
         return True
 
-
     def copy(self):
         new = Data(
-            name = self.name,
+            name=self.name,
-            comment = self._comment,
+            comment=self._comment,
-            kp = self._kp,
+            kp=self._kp,
-            discharge = self._discharge,
+            discharge=self._discharge,
-            height = self._height,
+            height=self._height,
-            reach = self._reach,
+            reach=self._reach,
-            status = self._status,
+            status=self._status,
         )
 
         return new
@@ -173,7 +174,7 @@ class Data(SQLSubModel):
 
     def _update_from_kp(self):
         min = self._update_get_min()
-        self._elevation = min - self._height
+        self._elevation = min + self._height
 
     def _update_from_elevation(self):
         min = self._update_get_min()
@@ -216,7 +217,7 @@ class InitialConditions(SQLSubModel):
         Data
     ]
 
-    def __init__(self, reach = None, status = None):
+    def __init__(self, reach=None, status=None):
         super(InitialConditions, self).__init__()
 
         self._status = status
@@ -233,23 +234,21 @@ class InitialConditions(SQLSubModel):
         return cls._update_submodel(execute, version)
 
     @classmethod
-    def _sql_load(cls, execute, data = None):
+    def _sql_load(cls, execute, data=None):
         new = cls(
-            reach = data["reach"],
+            reach=data["reach"],
-            status = data["status"]
+            status=data["status"]
         )
 
         new._data = Data._sql_load(
             execute,
-            data = data
+            data=data
         )
 
-        if new._data is None:
+        if new._data is not None:
-            return None
+            yield new
 
-        return new
+    def _sql_save(self, execute, data=None):
-
-    def _sql_save(self, execute, data = None):
         ok = True
 
         ind = 0
@@ -288,7 +287,7 @@ class InitialConditions(SQLSubModel):
         self._status.modified()
 
     def new(self, index):
-        n = Data(reach = self._reach, status = self._status)
+        n = Data(reach=self._reach, status=self._status)
         self._data.insert(index, n)
         self._status.modified()
 
@@ -321,7 +320,6 @@ class InitialConditions(SQLSubModel):
         self._data.sort(reverse=reverse, key=key)
         self._status.modified()
 
-
     def _data_get(self, key):
         return list(
             map(
@@ -341,8 +339,8 @@ class InitialConditions(SQLSubModel):
 
     def _sort_by_z_and_kp(self, profiles):
         profiles.sort(
-            reverse = False,
+            reverse=False,
-            key = lambda p: p.kp
+            key=lambda p: p.kp
         )
 
         first_z = profiles[0].z()
@@ -350,11 +348,11 @@ class InitialConditions(SQLSubModel):
 
         if first_z > last_z:
             profiles.sort(
-                reverse = True,
+                reverse=True,
-                key = lambda p: p.kp
+                key=lambda p: p.kp
             )
 
-    def generate_growing_constante_height(self, height:float):
+    def generate_growing_constante_height(self, height: float):
         self._data = []
 
         profiles = self._reach.reach.profiles
@@ -362,7 +360,7 @@ class InitialConditions(SQLSubModel):
 
         prev = None
         for profile in profiles:
-            new = Data(reach = self._reach, status = self._status)
+            new = Data(reach=self._reach, status=self._status)
             new["kp"] = profile.kp
 
             if prev is None:
@@ -381,11 +379,11 @@ class InitialConditions(SQLSubModel):
             is_reverse = True
 
         self._data.sort(
-            reverse = not is_reverse,
+            reverse=not is_reverse,
-            key = lambda d: d['kp']
+            key=lambda d: d['kp']
         )
 
-    def generate_discharge(self, discharge:float):
+    def generate_discharge(self, discharge: float):
         self._new = []
 
         for d in self._data:

src/Model/InitialConditions/InitialConditionsDict.py

@@ -16,81 +16,62 @@
 
 # -*- coding: utf-8 -*-
 
+import types
 from copy import copy
 from tools import trace, timer
 
-from Model.DB import SQLSubModel
+from Model.Tools.PamhyrDict import PamhyrModelDict
 from Model.InitialConditions.InitialConditions import InitialConditions
 
-class InitialConditionsDict(SQLSubModel):
+
+class InitialConditionsDict(PamhyrModelDict):
     _sub_classes = [
         InitialConditions,
     ]
 
-    def __init__(self, status = None):
-        super(InitialConditionsDict, self).__init__()
-
-        self._status = status
-
-        self._reach = {}
-
     @classmethod
-    def _sql_create(cls, execute):
+    def _sql_load(cls, execute, data=None):
-        return cls._create_submodel(execute)
+        new = cls(status=data["status"])
-
-    @classmethod
-    def _sql_update(cls, execute, version):
-        return cls._update_submodel(execute, version)
-
-    @classmethod
-    def _sql_load(cls, execute, data = None):
-        new = cls(status = data["status"])
 
         for reach in data["edges"]:
             data["reach"] = reach
 
             ic = InitialConditions._sql_load(
                 execute,
-                data = data
+                data=data
             )
 
             if ic is not None:
-                new._reach[reach] = ic
+                new._dict[reach] = ic
 
         return new
 
-    def _sql_save(self, execute, data = None):
+    def _sql_save(self, execute, data=None):
         ok = True
         if data is None:
             data = {}
 
         execute("DELETE FROM initial_conditions")
 
-        for reach in self._reach:
+        for reach in self._dict:
             data["reach"] = reach
-            ok &= self._reach[reach]._sql_save(execute, data)
+            ok &= self._dict[reach]._sql_save(execute, data)
 
         return ok
 
-    def __len__(self):
+    def get(self, key):
-        return len(self._reach)
+        if key in self._dict:
+            v = self._dict[key]
+            if isinstance(v, types.GeneratorType):
+                self._dict[key] = list(v)[0]
 
-    def is_defined(self, reach):
+            return self._dict[key]
-        return reach in self._reach
 
-    def get(self, reach):
+        new = self.new(key)
-        if reach in self._reach:
+        self.set(key, new)
-            return self._reach[reach]
-
-        new = self.new(reach)
-        self.set(reach, new)
         return new
 
-    def set(self, reach, new):
-        self._reach[reach] = new
-        self._status.modified()
-
     def new(self, reach):
-        new = InitialConditions(reach = reach, status = self._status)
+        new = InitialConditions(reach=reach, status=self._status)
         self.set(reach, new)
         return new

src/Model/LateralContribution/LateralContribution.py

@@ -20,16 +20,17 @@ import logging
 
 from tools import trace, timer, old_pamhyr_date_to_timestamp
 
-from Model.DB import SQLSubModel
+from Model.Tools.PamhyrDB import SQLSubModel
 from Model.Except import NotImplementedMethodeError
 
 logger = logging.getLogger()
 
+
 class LateralContribution(SQLSubModel):
     _sub_classes = []
     _id_cnt = 0
 
-    def __init__(self, id:int = -1, name:str = "", status = None):
+    def __init__(self, id: int = -1, name: str = "", status=None):
         super(LateralContribution, self).__init__()
 
         self._status = status
@@ -39,7 +40,6 @@ class LateralContribution(SQLSubModel):
         else:
             self.id = id
 
-
         self._name = name
         self._type = ""
         self._edge = None
@@ -49,7 +49,8 @@ class LateralContribution(SQLSubModel):
         self._header = []
         self._types = [float, float]
 
-        LateralContribution._id_cnt = max(LateralContribution._id_cnt + 1, self.id)
+        LateralContribution._id_cnt = max(
+            LateralContribution._id_cnt + 1, self.id)
 
     @classmethod
     def _sql_create(cls, execute):
@@ -99,7 +100,7 @@ class LateralContribution(SQLSubModel):
         return res
 
     @classmethod
-    def _sql_load(cls, execute, data = None):
+    def _sql_load(cls, execute, data=None):
         new = []
         tab = data["tab"]
 
@@ -112,9 +113,9 @@ class LateralContribution(SQLSubModel):
             t = row[2]
             ctor = cls._get_ctor_from_type(t)
             lc = ctor(
-                id = row[0],
+                id=row[0],
-                name = row[1],
+                name=row[1],
-                status = data['status']
+                status=data['status']
             )
             lc.edge = None
             if row[3] != -1:
@@ -141,7 +142,7 @@ class LateralContribution(SQLSubModel):
 
         return new
 
-    def _sql_save(self, execute, data = None):
+    def _sql_save(self, execute, data=None):
         tab = data["tab"]
 
         execute(f"DELETE FROM lateral_contribution WHERE id = {self.id}")
@@ -153,7 +154,8 @@ class LateralContribution(SQLSubModel):
 
         sql = (
             "INSERT INTO " +
-            "lateral_contribution(id, name, type, tab, edge, begin_kp, end_kp) "+
+            "lateral_contribution(id, name, type, tab, " +
+            "edge, begin_kp, end_kp) " +
             "VALUES (" +
             f"{self.id}, '{self._sql_format(self._name)}', " +
             f"'{self._sql_format(self._type)}', '{tab}', {edge}, " +
@@ -169,7 +171,7 @@ class LateralContribution(SQLSubModel):
 
             sql = (
                 "INSERT INTO " +
-                "lateral_contribution_data(ind, data0, data1, lc) "+
+                "lateral_contribution_data(ind, data0, data1, lc) " +
                 f"VALUES ({ind}, '{data0}', {data1}, {self.id})"
             )
             execute(sql)
@@ -186,7 +188,7 @@ class LateralContribution(SQLSubModel):
 
     @classmethod
     def time_convert(cls, data):
-        if type(data) == str and data.count(":") == 3:
+        if data is str and data.count(":") == 3:
             return old_pamhyr_date_to_timestamp(data)
 
         return int(data)
@@ -282,7 +284,7 @@ class LateralContribution(SQLSubModel):
         new_1 = self._default_1
 
         if len(header) != 0:
-            for i in [0,1]:
+            for i in [0, 1]:
                 for j in range(len(header)):
                     if self._header[i] == header[j]:
                         if i == 0:
@@ -295,13 +297,13 @@ class LateralContribution(SQLSubModel):
 
         return (new_0, new_1)
 
-    def add(self, index:int):
+    def add(self, index: int):
         value = (self._default_0, self._default_1)
         self._data.insert(index, value)
         self._status.modified()
         return value
 
-    def insert(self, index:int, value):
+    def insert(self, index: int, value):
         self._data.insert(index, value)
         self._status.modified()
 
@@ -337,11 +339,10 @@ class LateralContribution(SQLSubModel):
         return self.data[index]
 
     def get_range(self, _range):
-        l = []
+        lst = []
         for r in _range:
-            l.append(r)
+            lst.append(r)
-        return l
+        return lst
-
 
     def _set_i_c_v(self, index, column, value):
         v = list(self._data[index])
@@ -349,15 +350,15 @@ class LateralContribution(SQLSubModel):
         self._data[index] = tuple(v)
         self._status.modified()
 
-    def set_i_0(self, index:int, value):
+    def set_i_0(self, index: int, value):
         self._set_i_c_v(index, 0, value)
 
-    def set_i_1(self, index:int, value):
+    def set_i_1(self, index: int, value):
         self._set_i_c_v(index, 1, value)
 
     @timer
     def convert(self, cls):
-        new = cls(name = self.name, status = self._status)
+        new = cls(name=self.name, status=self._status)
         new.edge = self.edge
         new.begin_kp = self.begin_kp
         new.end_kp = self.end_kp
@@ -365,8 +366,8 @@ class LateralContribution(SQLSubModel):
         for i, _ in enumerate(self.data):
             new.add(i)
 
-        for i in [0,1]:
+        for i in [0, 1]:
-            for j in [0,1]:
+            for j in [0, 1]:
                 if self._header[i] == new.header[j]:
                     for ind, v in self.data:
                         try:

src/Model/LateralContribution/LateralContributionList.py

@@ -19,7 +19,7 @@
 from copy import copy
 from tools import trace, timer
 
-from Model.DB import SQLSubModel
+from Model.Tools.PamhyrList import PamhyrModelListWithTab
 from Model.Except import NotImplementedMethodeError
 
 from Model.LateralContribution.LateralContribution import LateralContribution
@@ -27,33 +27,16 @@ from Model.LateralContribution.LateralContributionTypes import (
     NotDefined, LateralContrib, Rain, Evaporation,
 )
 
-class LateralContributionList(SQLSubModel):
+
+class LateralContributionList(PamhyrModelListWithTab):
+    _tabs_list = ["liquid", "solid", "suspenssion"]
     _sub_classes = [
         LateralContribution,
     ]
 
-    def __init__(self, status = None):
-        super(LateralContributionList, self).__init__()
-
-        self._status = status
-
-        self._tabs = {
-            "liquid" : [],
-            "solid" : [],
-            "suspenssion" : []
-        }
-
     @classmethod
-    def _sql_create(cls, execute):
+    def _sql_load(cls, execute, data=None):
-        return cls._create_submodel(execute)
+        new = cls(status=data['status'])
-
-    @classmethod
-    def _sql_update(cls, execute, version):
-        return True
-
-    @classmethod
-    def _sql_load(cls, execute, data = None):
-        new = cls(status = data['status'])
 
         if data is None:
             data = {}
@@ -66,7 +49,7 @@ class LateralContributionList(SQLSubModel):
 
         return new
 
-    def _sql_save(self, execute, data = None):
+    def _sql_save(self, execute, data=None):
         execute("DELETE FROM lateral_contribution")
 
         if data is None:
@@ -75,83 +58,29 @@ class LateralContributionList(SQLSubModel):
         for tab in self._tabs:
             data["tab"] = tab
             for lc in self._tabs[tab]:
-                lc._sql_save(execute, data = data)
+                lc._sql_save(execute, data=data)
 
         return True
 
-    def len(self, lst):
-        return len(self._tabs[lst])
-
-    def get_tab(self, lst):
-        return self._tabs[lst].copy()
-
-    def get(self, lst, row):
-        return self._tabs[lst][row]
-
-    def set(self, lst, row, new):
-        self._tabs[lst][row] = new
-        self._status.modified()
-
     def new(self, lst, index):
         n = NotDefined(status=self._status)
         self._tabs[lst].insert(index, n)
         self._status.modified()
         return n
 
-    def insert(self, lst, index, new):
-        self._tabs[lst].insert(index, new)
-        self._status.modified()
-
-    def delete(self, lst, bcs):
-        for bc in bcs:
-            self._tabs[lst].remove(bc)
-        self._status.modified()
-
-    def delete_i(self, lst, indexes):
-        bcs = list(
-            map(
-                lambda x: x[1],
-                filter(
-                    lambda x: x[0] in indexes,
-                    enumerate(self._tabs[lst])
-                )
-            )
-        )
-        self.delete(lst, bcs)
-
-    def sort(self, lst, reverse=False, key=None):
-        self._tabs[lst].sort(reverse=reverse, key=key)
-        self._status.modified()
-
-    def move_up(self, lst, index):
-        if index < len(self._tabs[lst]):
-            next = index - 1
-
-            l = self._tabs[lst]
-            l[index], l[next] = l[next], l[index]
-            self._status.modified()
-
-    def move_down(self, lst, index):
-        if index >= 0:
-            prev = index + 1
-
-            l = self._tabs[lst]
-            l[index], l[prev] = l[prev], l[index]
-            self._status.modified()
-
     def __copy__(self):
         new = LateralContributionList()
 
-        for l in self._tabs:
+        for lst in self._tabs:
-            new.tabs[l] = self._tabs[l].copy()
+            new.tabs[lst] = self._tabs[lst].copy()
 
         return new
 
     def __deepcopy__(self):
         new = LateralContributionList()
 
-        for l in self._tabs:
+        for lst in self._tabs:
-            new.tabs[l] = self._tabs[l].deepcopy()
+            new.tabs[lst] = self._tabs[lst].deepcopy()
 
         return new
 

src/Model/LateralContribution/LateralContributionTypes.py

@@ -22,7 +22,7 @@ from Model.LateralContribution.LateralContribution import LateralContribution
 
 
 class NotDefined(LateralContribution):
-    def __init__(self, id:int = -1, name:str = "", status=None):
+    def __init__(self, id: int = -1, name: str = "", status=None):
         super(NotDefined, self).__init__(id=id, name=name, status=status)
 
         self._type = "ND"
@@ -32,8 +32,9 @@ class NotDefined(LateralContribution):
     def _default_0(self):
         return 0.0
 
+
 class LateralContrib(LateralContribution):
-    def __init__(self, id:int = -1, name:str = "", status=None):
+    def __init__(self, id: int = -1, name: str = "", status=None):
         super(LateralContrib, self).__init__(id=id, name=name, status=status)
 
         self._type = "LC"
@@ -44,8 +45,9 @@ class LateralContrib(LateralContribution):
     def compatibility(cls):
         return ["liquid"]
 
+
 class Rain(LateralContribution):
-    def __init__(self, id:int = -1, name:str = "", status=None):
+    def __init__(self, id: int = -1, name: str = "", status=None):
         super(Rain, self).__init__(id=id, name=name, status=status)
 
         self._type = "RA"
@@ -56,8 +58,9 @@ class Rain(LateralContribution):
     def compatibility(cls):
         return ["liquid"]
 
+
 class Evaporation(LateralContribution):
-    def __init__(self, id:int = -1, name:str = "", status=None):
+    def __init__(self, id: int = -1, name: str = "", status=None):
         super(Evaporation, self).__init__(id=id, name=name, status=status)
 
         self._type = "EV"

src/Model/Network/Edge.py

@@ -18,13 +18,14 @@
 
 from Model.Network.Node import Node
 
+
 class Edge(object):
     _id_cnt = 0
 
-    def __init__(self, id:int, name:str,
+    def __init__(self, id: int, name: str,
-                 node1:Node = None,
+                 node1: Node = None,
-                 node2:Node = None,
+                 node2: Node = None,
-                 status = None):
+                 status=None):
         super(Edge, self).__init__()
 
         self._status = status
@@ -74,7 +75,10 @@ class Edge(object):
 
     @property
     def name(self):
-        return self._name if self._name != "" else f"{self.node1.name} -> {self.node2.name}"
+        name = self._name
+        if self._name == "":
+            name = f"{self.node1.name} -> {self.node2.name}"
+        return name
 
     def is_enable(self):
         return self._enable

src/Model/Network/Graph.py

@@ -21,8 +21,9 @@ from functools import reduce
 from Model.Network.Node import Node
 from Model.Network.Edge import Edge
 
+
 class Graph(object):
-    def __init__(self, status = None):
+    def __init__(self, status=None):
         super(Graph, self).__init__()
 
         self._status = status
@@ -83,7 +84,7 @@ class Graph(object):
             False
         )
 
-    def node(self, node_name:str):
+    def node(self, node_name: str):
         node = list(
             filter(
                 lambda n: n.name == node_name,
@@ -96,7 +97,7 @@ class Graph(object):
 
         return node[0]
 
-    def edge(self, edge_name:str):
+    def edge(self, edge_name: str):
         edge = list(
             filter(
                 lambda e: e.name == edge_name,
@@ -109,12 +110,12 @@ class Graph(object):
 
         return edge[0]
 
-    def _create_node(self, x:float, y:float):
+    def _create_node(self, x: float, y: float):
         node = self._node_ctor(
             -1,
             "",
-            x = x, y = y,
+            x=x, y=y,
-            status = self._status
+            status=self._status
         )
         return node
 
@@ -123,14 +124,14 @@ class Graph(object):
         self._status.modified()
         return node
 
-    def add_node(self, x:float = 0.0, y:float = 0.0):
+    def add_node(self, x: float = 0.0, y: float = 0.0):
         node = self._create_node(x, y)
         return self._add_node(node)
 
     def insert_node(self, node):
         return self._add_node(node)
 
-    def remove_node(self, node_name:str):
+    def remove_node(self, node_name: str):
         self._nodes = list(
             filter(
                 lambda n: n.name != node_name,
@@ -139,19 +140,18 @@ class Graph(object):
         )
         self._status.modified()
 
-    def create_node(self, x:float = 0.0, y:float = 0.0):
+    def create_node(self, x: float = 0.0, y: float = 0.0):
         node = self._create_node(x, y)
         return node
 
-    def _create_edge(self, n1:Node, n2:Node):
+    def _create_edge(self, n1: Node, n2: Node):
         edge = self._edge_ctor(
             -1,
             "", n1, n2,
-            status = self._status
+            status=self._status
         )
         return edge
 
-
     def _add_edge(self, edge):
         # This edge already exists ?
         if any(filter(lambda e: (e.node1 == edge.node1 and
@@ -164,17 +164,17 @@ class Graph(object):
         self._status.modified()
         return edge
 
-    def add_edge(self, n1:Node, n2:Node):
+    def add_edge(self, n1: Node, n2: Node):
         edge = self._create_edge(n1, n2)
         return self._add_edge(edge)
 
     def insert_edge(self, edge):
         return self._add_edge(edge)
 
-    def create_edge(self, n1:Node, n2:Node):
+    def create_edge(self, n1: Node, n2: Node):
         return self._create_edge(n1, n2)
 
-    def remove_edge(self, edge_name:str):
+    def remove_edge(self, edge_name: str):
         self._edges = list(
             filter(
                 lambda e: e.name != edge_name,

src/Model/Network/Node.py

@@ -18,12 +18,13 @@
 
 from Model.Network.Point import Point
 
+
 class Node(object):
     _id_cnt = 0
 
-    def __init__(self, id:int, name:str,
+    def __init__(self, id: int, name: str,
-                 x:float = 0.0, y:float = 0.0,
+                 x: float = 0.0, y: float = 0.0,
-                 status = None):
+                 status=None):
         super(Node, self).__init__()
 
         self._status = status
@@ -73,7 +74,6 @@ class Node(object):
     def y(self):
         return self.pos.y
 
-
     def setPos(self, x, y):
         self.pos.x = x
         self.pos.y = y

src/Model/Network/Point.py

@@ -17,7 +17,7 @@
 # -*- coding: utf-8 -*-
 
 class Point(object):
-    def __init__(self, x:float, y:float):
+    def __init__(self, x: float, y: float):
         super(Point, self).__init__()
 
         self.x = x

src/Model/Results/Results.py

@@ -24,9 +24,15 @@ from Model.Results.River.River import River
 
 logger = logging.getLogger()
 
+
 class Results(object):
-    def __init__(self, study = None):
+    def __init__(self, study=None, solver=None,
+                 repertory="", name="0"):
         self._study = study
+        self._solver = solver
+        self._repertory = repertory
+        self._name = name
+
         self._river = River(self._study)
 
         self._meta_data = {
@@ -43,8 +49,19 @@ class Results(object):
     def river(self):
         return self._river
 
+    @property
+    def study(self):
+        return self._study
+
     def set(self, key, value):
         self._meta_data[key] = value
 
     def get(self, key):
         return self._meta_data[key]
+
+    def reload(self):
+        return self._solver.results(
+            self._study,
+            self._repertory,
+            qlog=None,
+        )

src/Model/Results/River/River.py

@@ -20,11 +20,15 @@ from datetime import datetime
 
 logger = logging.getLogger()
 
+
 class Profile(object):
     def __init__(self, profile, study):
         self._study = study
-        self._profile = profile # Source profile in the study
+        self._profile = profile  # Source profile in the study
-        self._data = {} # Dict of dict {<ts>: {<key>: <value>, ...}, ...}
+        self._data = {}  # Dict of dict {<ts>: {<key>: <value>, ...}, ...}
+
+    def __len__(self):
+        return len(self._data)
 
     @property
     def name(self):
@@ -55,10 +59,11 @@ class Profile(object):
     def get_ts_key(self, timestamp, key):
         return self._data[timestamp][key]
 
+
 class Reach(object):
     def __init__(self, reach, study):
         self._study = study
-        self._reach = reach # Source reach in the study
+        self._reach = reach  # Source reach in the study
         self._profiles = list(
             map(
                 lambda p: Profile(p, self._study),
@@ -66,6 +71,9 @@ class Reach(object):
             )
         )
 
+    def __len__(self):
+        return len(self._profiles)
+
     @property
     def name(self):
         return self._reach.name
@@ -84,6 +92,7 @@ class Reach(object):
     def set(self, profile_id, timestamp, key, data):
         self._profiles[profile_id].set(timestamp, key, data)
 
+
 class River(object):
     def __init__(self, study):
         self._study = study
@@ -91,6 +100,9 @@ class River(object):
         # Dict with timestamps as key
         self._reachs = []
 
+    def __len__(self):
+        return len(self._reachs)
+
     @property
     def reachs(self):
         return self._reachs.copy()

src/Model/River.py

@@ -18,7 +18,7 @@
 
 from tools import flatten
 
-from Model.DB import SQLSubModel
+from Model.Tools.PamhyrDB import SQLSubModel
 
 from Model.Network.Node import Node
 from Model.Network.Edge import Edge
@@ -28,7 +28,9 @@ from Model.Geometry.Profile import Profile
 from Model.Geometry.Reach import Reach
 
 from Model.BoundaryCondition.BoundaryConditionList import BoundaryConditionList
-from Model.LateralContribution.LateralContributionList import LateralContributionList
+from Model.LateralContribution.LateralContributionList import (
+    LateralContributionList
+)
 from Model.InitialConditions.InitialConditionsDict import InitialConditionsDict
 from Model.Stricklers.StricklersList import StricklersList
 from Model.Friction.FrictionList import FrictionList
@@ -37,16 +39,17 @@ from Model.SedimentLayer.SedimentLayerList import SedimentLayerList
 
 from Solver.Solvers import solver_type_list
 
+
 class RiverNode(Node, SQLSubModel):
     _sub_classes = []
 
-    def __init__(self, id:str, name:str,
+    def __init__(self, id: str, name: str,
-                 x:float, y:float,
+                 x: float, y: float,
-                 status = None):
+                 status=None):
         super(RiverNode, self).__init__(
             id, name,
             x, y,
-            status = status
+            status=status
         )
 
         self._locker = None
@@ -70,7 +73,7 @@ class RiverNode(Node, SQLSubModel):
         return True
 
     @classmethod
-    def _sql_load(cls, execute, data = None):
+    def _sql_load(cls, execute, data=None):
         nodes = []
 
         table = execute("SELECT id, name, x, y FROM river_node")
@@ -82,11 +85,11 @@ class RiverNode(Node, SQLSubModel):
 
         return nodes
 
-    def _sql_save(self, execute, data = None):
+    def _sql_save(self, execute, data=None):
         sql = (
             "INSERT OR REPLACE INTO river_node(id, name, x, y) VALUES (" +
             f"{self.id}, '{self._sql_format(self.name)}', " +
-            f"{self.x}, {self.y}"+
+            f"{self.x}, {self.y}" +
             ")"
         )
         execute(sql)
@@ -108,18 +111,18 @@ class RiverReach(Edge, SQLSubModel):
         FrictionList,
     ]
 
-    def __init__(self, id:str, name:str,
+    def __init__(self, id: str, name: str,
-                 node1:RiverNode = None,
+                 node1: RiverNode = None,
-                 node2:RiverNode = None,
+                 node2: RiverNode = None,
-                 status = None):
+                 status=None):
         super(RiverReach, self).__init__(
             id, name,
             node1, node2,
-            status = status
+            status=status
         )
 
         self._reach = Reach(status=self._status, parent=self)
-        self._frictions = FrictionList(status = self._status)
+        self._frictions = FrictionList(status=self._status)
 
     @classmethod
     def _sql_create(cls, execute):
@@ -143,13 +146,14 @@ class RiverReach(Edge, SQLSubModel):
         return cls._update_submodel(execute, version)
 
     @classmethod
-    def _sql_load(cls, execute, data = None):
+    def _sql_load(cls, execute, data=None):
         reachs = []
 
         if data is None:
             data = {}
 
-        table = execute("SELECT id, name, enable, node1, node2 FROM river_reach")
+        table = execute(
+            "SELECT id, name, enable, node1, node2 FROM river_reach")
         for row in table:
             # Update id counter
             cls._id_cnt = max(cls._id_cnt, row[0])
@@ -161,8 +165,8 @@ class RiverReach(Edge, SQLSubModel):
             node1 = next(filter(lambda n: n.id == row[3], data["nodes"]))
             node2 = next(filter(lambda n: n.id == row[4], data["nodes"]))
 
-            new = cls(id, name, node1, node2, status = data["status"])
+            new = cls(id, name, node1, node2, status=data["status"])
-            new.enable(enable = enable)
+            new.enable(enable=enable)
 
             data["reach"] = id
             data["parent"] = new
@@ -174,14 +178,14 @@ class RiverReach(Edge, SQLSubModel):
 
         return reachs
 
-    def _sql_save(self, execute, data = None):
+    def _sql_save(self, execute, data=None):
         sql = (
             "INSERT OR REPLACE INTO " +
-            "river_reach(id, name, enable, node1, node2) "+
+            "river_reach(id, name, enable, node1, node2) " +
             "VALUES (" +
             f"{self.id}, '{self._sql_format(self._name)}', " +
             f"{self._sql_format(self.is_enable())},"
-            f"{self.node1.id}, {self.node2.id}"+
+            f"{self.node1.id}, {self.node2.id}" +
             ")"
         )
         execute(sql)
@@ -202,6 +206,7 @@ class RiverReach(Edge, SQLSubModel):
     def frictions(self):
         return self._frictions
 
+
 class River(Graph, SQLSubModel):
     _sub_classes = [
         RiverNode,
@@ -223,7 +228,8 @@ class River(Graph, SQLSubModel):
 
         self._current_reach = None
         self._boundary_condition = BoundaryConditionList(status=self._status)
-        self._lateral_contribution = LateralContributionList(status=self._status)
+        self._lateral_contribution = LateralContributionList(
+            status=self._status)
         self._initial_conditions = InitialConditionsDict(status=self._status)
         self._stricklers = StricklersList(status=self._status)
         self._parameters = {}
@@ -240,7 +246,7 @@ class River(Graph, SQLSubModel):
         return True
 
     @classmethod
-    def _sql_load(cls, execute, data = None):
+    def _sql_load(cls, execute, data=None):
         new = cls(data["status"])
 
         # Stricklers (Stricklers is load in first because it's needed
@@ -251,7 +257,6 @@ class River(Graph, SQLSubModel):
         )
         data["stricklers"] = new._stricklers
 
-
         # Initial conditions
         new._sediment_layers = SedimentLayerList._sql_load(
             execute,
@@ -297,7 +302,7 @@ class River(Graph, SQLSubModel):
 
         return new
 
-    def _sql_save(self, execute, data = None):
+    def _sql_save(self, execute, data=None):
         objs = (self._nodes + self._edges)
         objs.append(self._boundary_condition)
         objs.append(self._initial_conditions)
@@ -311,10 +316,6 @@ class River(Graph, SQLSubModel):
         self._save_submodel(execute, objs, data)
         return True
 
-    @property
-    def frictions(self):
-        return self._frictions
-
     @property
     def boundary_condition(self):
         return self._boundary_condition
@@ -348,7 +349,6 @@ class River(Graph, SQLSubModel):
 
         return ret[0]
 
-
     @property
     def parameters(self):
         return self._parameters
@@ -358,8 +358,8 @@ class River(Graph, SQLSubModel):
             return self._parameters[solver]
 
         new = SolverParametersList(
-            solver_type = solver_type_list[solver],
+            solver_type=solver_type_list[solver],
-            status = self._status
+            status=self._status
         )
         self._parameters[solver] = new
         self._status.modified()
@@ -385,7 +385,7 @@ class River(Graph, SQLSubModel):
         has = len(self._sediment_layers) != 0
         has &= any(
             filter(
-                lambda p: p.sl != None,
+                lambda p: p.sl is not None,
                 flatten(
                     map(lambda e: e.reach.profiles, self.edges())
                 )

src/Model/Saved.py

@@ -20,6 +20,7 @@ import logging
 
 logger = logging.getLogger()
 
+
 class SavedStatus(object):
     def __init__(self):
         super(SavedStatus, self).__init__()

src/Model/SedimentLayer/SedimentLayer.py

@@ -2,19 +2,20 @@
 
 from tools import trace, timer
 
-from Model.DB import SQLSubModel
+from Model.Tools.PamhyrDB import SQLSubModel
 from Model.Except import NotImplementedMethodeError
 
+
 class Layer(SQLSubModel):
     _sub_classes = []
     _id_cnt = 0
 
     def __init__(self,
-                 id:int = -1, name:str = "",
+                 id: int = -1, name: str = "",
-                 type = "",
+                 type="",
-                 height = 0.0, d50 = 0.0, sigma = 0.0,
+                 height=0.0, d50=0.0, sigma=0.0,
-                 critical_constraint = 0.0,
+                 critical_constraint=0.0,
-                 sl = None, status = None):
+                 sl=None, status=None):
         super(Layer, self).__init__()
 
         self._status = status
@@ -111,12 +112,13 @@ class Layer(SQLSubModel):
         return True
 
     @classmethod
-    def _sql_load(cls, execute, data = None):
+    def _sql_load(cls, execute, data=None):
         new = []
         sl = data["sl"]
 
         table = execute(
-            "SELECT id, ind, name, type, height, d50, sigma, critical_constraint " +
+            "SELECT id, ind, name, type, height, " +
+            "d50, sigma, critical_constraint " +
             "FROM sedimentary_layer_layer " +
             f"WHERE sl = {sl}"
         )
@@ -128,24 +130,25 @@ class Layer(SQLSubModel):
             ind = row[1]
 
             layer = cls(
-                id = row[0], name = row[2],
+                id=row[0], name=row[2],
-                type = row[3], height = row[4],
+                type=row[3], height=row[4],
-                d50 = row[5], sigma = row[6],
+                d50=row[5], sigma=row[6],
-                critical_constraint = row[7],
+                critical_constraint=row[7],
-                sl = sl, status = data['status']
+                sl=sl, status=data['status']
             )
 
             new[ind] = layer
 
         return new
 
-    def _sql_save(self, execute, data = None):
+    def _sql_save(self, execute, data=None):
         ind = data["ind"]
         sl = data["sl"]
 
         sql = (
             "INSERT INTO " +
-            "sedimentary_layer_layer(id, ind, name, type, height, d50, sigma, critical_constraint, sl) "+
+            "sedimentary_layer_layer(id, ind, name, type, height, " +
+            "d50, sigma, critical_constraint, sl) " +
             "VALUES (" +
             f"{self.id}, {ind}, '{self._sql_format(self._name)}', " +
             f"'{self._sql_format(self._type)}', {self._height}, " +
@@ -162,9 +165,9 @@ class SedimentLayer(SQLSubModel):
     _sub_classes = [Layer]
     _id_cnt = 0
 
-    def __init__(self, id:int = -1,
+    def __init__(self, id: int = -1,
-                 name:str = "", comment:str = "",
+                 name: str = "", comment: str = "",
-                 status = None):
+                 status=None):
         super(SedimentLayer, self).__init__()
 
         self._status = status
@@ -196,7 +199,7 @@ class SedimentLayer(SQLSubModel):
 
     def height(self):
         return list(
-            map(lambda l: l.height, self._layers)
+            map(lambda layer: layer.height, self._layers)
         )
 
     @property
@@ -209,7 +212,7 @@ class SedimentLayer(SQLSubModel):
 
     def names(self):
         return list(
-            map(lambda l: l.name, self._layers)
+            map(lambda layer: layer.name, self._layers)
         )
 
     @property
@@ -242,7 +245,7 @@ class SedimentLayer(SQLSubModel):
         return True
 
     @classmethod
-    def _sql_load(cls, execute, data = None):
+    def _sql_load(cls, execute, data=None):
         new = []
 
         table = execute(
@@ -252,10 +255,10 @@ class SedimentLayer(SQLSubModel):
 
         for row in table:
             sl = cls(
-                id = row[0],
+                id=row[0],
-                name = row[1],
+                name=row[1],
-                comment = row[2],
+                comment=row[2],
-                status = data['status']
+                status=data['status']
             )
 
             data["sl"] = sl.id
@@ -265,7 +268,7 @@ class SedimentLayer(SQLSubModel):
 
         return new
 
-    def _sql_save(self, execute, data = None):
+    def _sql_save(self, execute, data=None):
         if data is None:
             data = {}
 
@@ -279,9 +282,9 @@ class SedimentLayer(SQLSubModel):
         data["sl"] = self
 
         ind = 0
-        for l in self._layers:
+        for layer in self._layers:
             data["ind"] = ind
-            l._sql_save(execute, data)
+            layer._sql_save(execute, data)
             ind += 1
 
         return True
@@ -298,7 +301,7 @@ class SedimentLayer(SQLSubModel):
         self._status.modified()
 
     def new(self, index):
-        n = Layer(sl=self, status = self._status)
+        n = Layer(sl=self, status=self._status)
         self.insert(index, n)
         self._status.modified()
         return n
@@ -324,8 +327,8 @@ class SedimentLayer(SQLSubModel):
         if index >= 0:
             next = index - 1
 
-            l = self._layers
+            lst = self._layers
-            l[index], l[next] = l[next], l[index]
+            lst[index], lst[next] = lst[next], lst[index]
 
             self._status.modified()
 
@@ -333,7 +336,7 @@ class SedimentLayer(SQLSubModel):
         if index + 1 < len(self._layers):
             prev = index + 1
 
-            l = self._layers
+            lst = self._layers
-            l[index], l[prev] = l[prev], l[index]
+            lst[index], lst[prev] = lst[prev], lst[index]
 
             self._status.modified()

src/Model/SedimentLayer/SedimentLayerList.py

@@ -2,100 +2,40 @@
 
 from tools import trace, timer
 
-from Model.DB import SQLSubModel
 from Model.Except import NotImplementedMethodeError
+from Model.Tools.PamhyrList import PamhyrModelList
 from Model.SedimentLayer.SedimentLayer import SedimentLayer
 
-class SedimentLayerList(SQLSubModel):
+
+class SedimentLayerList(PamhyrModelList):
     _sub_classes = [SedimentLayer]
 
-    def __init__(self, status = None):
-        super(SedimentLayerList, self).__init__()
-
-        self._status = status
-        self._sl = []
-
-    def __len__(self):
-        return len(self._sl)
-
     @classmethod
-    def _sql_create(cls, execute):
+    def _sql_load(cls, execute, data=None):
-        return cls._create_submodel(execute)
+        new = cls(status=data["status"])
 
-    @classmethod
+        new._lst = SedimentLayer._sql_load(execute, data)
-    def _sql_update(cls, execute, version):
-        return cls._update_submodel(execute, version)
-
-    @classmethod
-    def _sql_load(cls, execute, data = None):
-        new = cls(status = data["status"])
-
-        new._sl = SedimentLayer._sql_load(execute, data)
 
         return new
 
-    def _sql_save(self, execute, data = None):
+    def _sql_save(self, execute, data=None):
         ok = True
 
         # Delete previous data
         execute("DELETE FROM sedimentary_layer")
         execute("DELETE FROM sedimentary_layer_layer")
 
-        for sl in self._sl:
+        for sl in self._lst:
             ok &= sl._sql_save(execute, data)
 
         return ok
 
     @property
     def sediment_layers(self):
-        return self._sl.copy()
+        return self.lst
-
-    def get(self, index):
-        return self._sl[index]
-
-    def set(self, index, new):
-        self._sl[index] = new
-        self._status.modified()
-
-    def insert(self, index, new):
-        self._sl.insert(index, new)
-        self._status.modified()
 
     def new(self, index):
-        n = SedimentLayer(status = self._status)
+        n = SedimentLayer(status=self._status)
         self.insert(index, n)
         self._status.modified()
         return n
-
-    def delete(self, els):
-        for el in els:
-            self._sl.remove(el)
-        self._status.modified()
-
-    def delete_i(self, indexes):
-        els = list(
-            map(
-                lambda x: x[1],
-                filter(
-                    lambda x: x[0] in indexes,
-                    enumerate(self._sl)
-                )
-            )
-        )
-        self.delete(els)
-
-    def move_up(self, index):
-        if index < len(self._sl):
-            next = index - 1
-
-            l = self._sl
-            l[index], l[next] = l[next], l[index]
-            self._status.modified()
-
-    def move_down(self, index):
-        if index >= 0:
-            prev = index + 1
-
-            l = self._sl
-            l[index], l[prev] = l[prev], l[index]
-            self._status.modified()

src/Model/Serializable.py

@@ -18,6 +18,7 @@
 
 import pickle
 
+
 class Serializable():
     def __init__(self):
         return

src/Model/SolverParameters/SolverParametersList.py

@@ -20,12 +20,13 @@ from copy import copy
 from tools import trace, timer
 from Solver.Solvers import solver_type_list
 
-from Model.DB import SQLSubModel
+from Model.Tools.PamhyrList import PamhyrModelList
+
 
 class Parameter():
     def __init__(self,
-                 name = "", value = "",
+                 name="", value="",
-                 status = None):
+                 status=None):
         self._status = status
 
         self._name = name
@@ -57,26 +58,26 @@ class Parameter():
 
     @classmethod
     def from_tuple(cls, data, status):
-        new = cls(status = status)
+        new = cls(status=status)
         new["name"] = data[0]
         new["value"] = data[1]
 
         return new
 
-class SolverParametersList(SQLSubModel):
+
-    def __init__(self, solver_type = None, status = None):
+class SolverParametersList(PamhyrModelList):
+    def __init__(self, solver_type=None, status=None):
         super(SolverParametersList, self).__init__()
 
         self._status = status
         self._solver = solver_type
-        self._parameters = list(
+        self._lst = list(
             map(
                 lambda t: Parameter.from_tuple(t, self._status),
                 solver_type.default_parameters()
             )
         )
 
-
     @classmethod
     def _sql_create(cls, execute):
         execute("""
@@ -97,35 +98,42 @@ class SolverParametersList(SQLSubModel):
 
         if major == minor == "0":
             if int(release) < 3:
-                execute(f"UPDATE solver_parameter SET name='mage_implicitation' WHERE name='mage_implication'")
+                execute(
-                execute(f"UPDATE solver_parameter SET name='mage_iteration_type' WHERE name='mage_iter_type'")
+                    "UPDATE solver_parameter SET name='mage_implicitation' " +
+                    "WHERE name='mage_implication'"
+                )
+                execute(
+                    "UPDATE solver_parameter SET name='mage_iteration_type' " +
+                    "WHERE name='mage_iter_type'"
+                )
 
             if int(release) < 4:
-                solvers = execute("SELECT DISTINCT solver FROM solver_parameter")
+                solvers = execute(
+                    "SELECT DISTINCT solver FROM solver_parameter")
 
                 for solver in solvers:
                     if solver != "mage8":
                         continue
 
                     data = execute("SELECT ind, name, value " +
-                                  "FROM solver_parameter "+
+                                   "FROM solver_parameter " +
-                                  f"WHERE solver = '{solver}' " +
+                                   f"WHERE solver = '{solver}' " +
-                                  "ORDER BY ind ACS")
+                                   "ORDER BY ind ACS")
 
                     execute(
                         "DELETE FROM solver_parameter " +
                         f"WHERE solver = '{solver}'"
                     )
 
-                    insert = lambda name, value, ind: execute(
+                    def insert(name, value, ind): return execute(
-                            "INSERT INTO " +
+                        "INSERT INTO " +
-                            "solver_parameter(ind, name, value, solver) "+
+                        "solver_parameter(ind, name, value, solver) " +
-                            "VALUES (" +
+                        "VALUES (" +
-                            f"{ind}, " +
+                        f"{ind}, " +
-                            f"'{cls._sql_format(name)}', " +
+                        f"'{cls._sql_format(name)}', " +
-                            f"'{cls._sql_format(value)}', " +
+                        f"'{cls._sql_format(value)}', " +
-                            f"'{cls._sql_format(solver)}'" +
+                        f"'{cls._sql_format(solver)}'" +
-                            ")"
+                        ")"
                     )
 
                     ind = 0
@@ -156,7 +164,7 @@ class SolverParametersList(SQLSubModel):
         return cls._update_submodel(execute, version)
 
     @classmethod
-    def _sql_load(cls, execute, data = None):
+    def _sql_load(cls, execute, data=None):
         status = data["status"]
         solvers = execute("SELECT DISTINCT solver FROM solver_parameter")
         new = {}
@@ -167,7 +175,7 @@ class SolverParametersList(SQLSubModel):
                 continue
 
             st = solver_type_list[solver]
-            n = cls(solver_type = st, status = status)
+            n = cls(solver_type=st, status=status)
 
             table = execute(
                 "SELECT ind, name, value " +
@@ -186,7 +194,7 @@ class SolverParametersList(SQLSubModel):
 
         return new
 
-    def _sql_save(self, execute, data = None):
+    def _sql_save(self, execute, data=None):
         t = self._solver._type
         execute(
             "DELETE FROM solver_parameter " +
@@ -194,10 +202,10 @@ class SolverParametersList(SQLSubModel):
         )
 
         ind = 0
-        for param in self._parameters:
+        for param in self._lst:
             sql = (
                 "INSERT INTO " +
-                "solver_parameter(ind, name, value, solver) "+
+                "solver_parameter(ind, name, value, solver) " +
                 "VALUES (" +
                 f"{ind}, " +
                 f"'{self._sql_format(param.name)}', " +
@@ -210,90 +218,46 @@ class SolverParametersList(SQLSubModel):
 
         return True
 
-    def __len__(self):
-        return len(self._parameters)
-
     @property
     def parameters(self):
-        return self._parameters.copy()
+        return self.lst
 
     def get(self, index):
-        return self._parameters[index]
+        return self._lst[index]
 
     def get_by_key(self, key):
         try:
             return next(
                 filter(
                     lambda p: p["name"] == key,
-                    self._parameters
+                    self._lst
                 )
             )["value"]
-        except:
+        except Exception:
             return None
 
     def set(self, index, new):
-        self._parameters[index] = new
+        self._lst[index] = new
         self._status.modified()
 
     def set_value(self, key, value):
-        for p in self._parameters:
+        for p in self._lst:
             if p["name"] == key:
                 p["value"] = value
                 self._status.modified()
                 return
 
-        self._parameters.append(
+        self._lst.append(
             Parameter(
-                name = key,
+                name=key,
-                value = value,
+                value=value,
-                status = self._status
+                status=self._status
             )
         )
         self._status.modified()
 
     def new(self, index):
-        n = Parameter(status = self._status)
+        n = Parameter(status=self._status)
-        self._parameters.insert(index, n)
+        self._lst.insert(index, n)
         self._status.modified()
         return n
-
-    def insert(self, index, new):
-        self._parameters.insert(index, new)
-        self._status.modified()
-
-    def delete(self, parameters):
-        for parameter in parameters:
-            self._parameters.remove(parameter)
-        self._status.modified()
-
-    def delete_i(self, indexes):
-        parameters = list(
-            map(
-                lambda x: x[1],
-                filter(
-                    lambda x: x[0] in indexes,
-                    enumerate(self._parameters)
-                )
-            )
-        )
-        self.delete(parameters)
-
-    def sort(self, reverse=False, key=None):
-        self._parameters.sort(reverse=reverse, key=key)
-        self._status.modified()
-
-    def move_up(self, index):
-        if index < len(self._parameters):
-            next = index - 1
-
-            l = self._parameters
-            l[index], l[next] = l[next], l[index]
-            self._status.modified()
-
-    def move_down(self, index):
-        if index >= 0:
-            prev = index + 1
-
-            l = self._parameters
-            l[index], l[prev] = l[prev], l[index]
-            self._status.modified()

src/Model/Stricklers/Stricklers.py

@@ -18,18 +18,19 @@
 
 from tools import trace, timer
 
-from Model.DB import SQLSubModel
+from Model.Tools.PamhyrDB import SQLSubModel
+
 
 class Stricklers(SQLSubModel):
     _id_cnt = 0
     _sub_classes = []
 
-    def __init__(self, id:int = -1,
+    def __init__(self, id: int = -1,
-                 name:str = "",
+                 name: str = "",
-                 comment:str = "",
+                 comment: str = "",
-                 minor:float = 35.0,
+                 minor: float = 35.0,
-                 medium:float = 15.0,
+                 medium: float = 15.0,
-                 status = None):
+                 status=None):
         super(Stricklers, self).__init__()
         self._status = status
 
@@ -46,7 +47,6 @@ class Stricklers(SQLSubModel):
         self._minor = minor
         self._medium = medium
 
-
     @classmethod
     def _sql_create(cls, execute):
         execute("""
@@ -66,7 +66,7 @@ class Stricklers(SQLSubModel):
         return cls._update_submodel(execute, version)
 
     @classmethod
-    def _sql_load(cls, execute, data = None):
+    def _sql_load(cls, execute, data=None):
         stricklers = []
         status = data["status"]
 
@@ -86,21 +86,21 @@ class Stricklers(SQLSubModel):
             medium = row[4]
 
             new = cls(
-                id = id,
+                id=id,
-                name = name,
+                name=name,
-                comment = comment,
+                comment=comment,
-                minor = minor, medium = medium,
+                minor=minor, medium=medium,
-                status = status
+                status=status
             )
 
             stricklers.append(new)
 
         return stricklers
 
-    def _sql_save(self, execute, data = None):
+    def _sql_save(self, execute, data=None):
         sql = (
             "INSERT INTO " +
-            "stricklers(id, name, comment, minor, medium) "+
+            "stricklers(id, name, comment, minor, medium) " +
             "VALUES (" +
             f"{self.id}, " +
             f"'{self._sql_format(self.name)}', " +

src/Model/Stricklers/StricklersList.py

@@ -18,22 +18,16 @@
 
 from tools import trace, timer
 
-from Model.DB import SQLSubModel
 from Model.Saved import SavedStatus
+from Model.Tools.PamhyrList import PamhyrModelList
 from Model.Stricklers.Stricklers import Stricklers
 
-class StricklersList(SQLSubModel):
+
+class StricklersList(PamhyrModelList):
     _sub_classes = [
         Stricklers,
     ]
 
-    def __init__(self, status = None):
-        if status is None:
-            status = SavedStatus()
-        self._status = status
-
-        self._stricks = []
-
     @classmethod
     def _sql_create(cls, execute):
         return cls._create_submodel(execute)
@@ -43,74 +37,42 @@ class StricklersList(SQLSubModel):
         return cls._update_submodel(execute, version)
 
     @classmethod
-    def _sql_load(cls, execute, data = None):
+    def _sql_load(cls, execute, data=None):
-        new = cls(status = data["status"])
+        new = cls(status=data["status"])
 
-        new._stricks = Stricklers._sql_load(
+        new._lst = Stricklers._sql_load(
             execute,
-            data = data
+            data=data
         )
 
         return new
 
-    def _sql_save(self, execute, data = None):
+    def _sql_save(self, execute, data=None):
         execute("DELETE FROM stricklers")
 
-        objs = self._stricks
+        objs = self._lst
         return self._save_submodel(execute, objs, data)
 
-    def __len__(self):
-        return len(self._stricks)
-
     @property
     def stricklers(self):
-        return self._stricks.copy()
+        return self.lst
 
-    def get(self, index):
+    def new(self, index):
-        if 0 <= index < len(self._stricks):
+        s = Stricklers(status=self._status)
-            return self._stricks[index]
-
-        return None
-
-    def insert(self, index, strick):
-        self._stricks.insert(index, strick)
-        self._status.modified()
-
-    def add(self, index):
-        s = Stricklers(status = self._status)
         self.insert(index, s)
         return s
 
-    def delete(self, stricks):
-        self._stricks = list(
-            filter(
-                lambda s: s not in stricks,
-                self._stricks
-            )
-        )
-        self._status.modified()
-
-    def delete_i(self, indexes):
-        stricks = set(
-            map(
-                lambda e: e[1],
-                filter(
-                    lambda e: e[0] in indexes,
-                    enumerate(self._stricks)
-                )
-            )
-        )
-        self.delete(stricks)
-
     @timer
-    def sort(self, reverse:bool = False, key=None):
+    def sort(self, reverse: bool = False, key=None):
-        f = lambda st: st.name
+        def f(st): return st.name
         if key is not None:
             f = key
 
-        self._stricks = sorted(
+        self._lst = sorted(
-            self._stricks,
+            self._lst,
-            key = f,
+            key=f,
-            reverse = reverse,
+            reverse=reverse,
         )
-        self._status.modified()
+
+        if self._status is not None:
+            self._status.modified()

src/Model/Study.py

@@ -23,7 +23,7 @@ from datetime import datetime
 
 from tools import timer, timestamp
 
-from Model.DB import SQLModel
+from Model.Tools.PamhyrDB import SQLModel
 from Model.Saved import SavedStatus
 from Model.Serializable import Serializable
 from Model.Except import NotImplementedMethodeError
@@ -33,12 +33,13 @@ from Checker.Study import *
 
 logger = logging.getLogger()
 
+
 class Study(SQLModel):
     _sub_classes = [
         River,
     ]
 
-    def __init__(self, filename = None, init_new = True):
+    def __init__(self, filename=None, init_new=True):
         # Metadata
         self._version = "0.0.4"
         self.creation_date = datetime.now()
@@ -46,7 +47,7 @@ class Study(SQLModel):
         self.last_save_date = datetime.now()
 
         self._filename = filename
-        super(Study, self).__init__(filename = filename)
+        super(Study, self).__init__(filename=filename)
 
         self.status = SavedStatus()
 
@@ -59,9 +60,9 @@ class Study(SQLModel):
 
         if init_new:
             # Study data
-            self._river = River(status = self.status)
+            self._river = River(status=self.status)
         else:
-            self._init_db_file(filename, is_new = False)
+            self._init_db_file(filename, is_new=False)
 
         self._old_save_id = 0
 
@@ -128,7 +129,7 @@ class Study(SQLModel):
     @filename.setter
     def filename(self, filename):
         self._filename = str(filename)
-        self._init_db_file(filename, is_new = True)
+        self._init_db_file(filename, is_new=True)
         self.status.modified()
 
     @property
@@ -139,7 +140,7 @@ class Study(SQLModel):
         self._time_system = "time"
         self.status.modified()
 
-    def use_date(self, date:datetime):
+    def use_date(self, date: datetime):
         self._time_system = "date"
         self._date = date
         self.status.modified()
@@ -158,7 +159,7 @@ class Study(SQLModel):
     #     return cls()
 
     @classmethod
-    def new(cls, name, description, date = None):
+    def new(cls, name, description, date=None):
         me = cls()
         me.name = name
         me.description = description
@@ -178,14 +179,17 @@ class Study(SQLModel):
 
     def _create(self):
         # Info (metadata)
-        self.execute("CREATE TABLE info(key TEXT NOT NULL UNIQUE, value TEXT NOT NULL)")
         self.execute(
-            f"INSERT INTO info VALUES ('version', '{self._sql_format(self._version)}')",
+            "CREATE TABLE info(key TEXT NOT NULL UNIQUE, value TEXT NOT NULL)")
-            commit = True
+        self.execute(
+            "INSERT INTO info VALUES ('version', " +
+            f"'{self._sql_format(self._version)}')",
+            commit=True
         )
         self.execute("INSERT INTO info VALUES ('name', '')")
         self.execute("INSERT INTO info VALUES ('description', '')")
-        self.execute(f"INSERT INTO info VALUES ('time_system', '{self._time_system}')")
+        self.execute(
+            f"INSERT INTO info VALUES ('time_system', '{self._time_system}')")
         self.execute(
             f"INSERT INTO info VALUES ('date', " +
             "'{self._date.timestamp()}')"
@@ -213,7 +217,8 @@ class Study(SQLModel):
         logger.info("Update database")
 
         if self._update_submodel(version[0]):
-            self.execute(f"UPDATE info SET value='{self._version}' WHERE key='version'")
+            self.execute(
+                f"UPDATE info SET value='{self._version}' WHERE key='version'")
             return True
 
         logger.info("TODO: update failed")
@@ -221,42 +226,75 @@ class Study(SQLModel):
 
     @classmethod
     def _load(cls, filename):
-        new = cls(init_new = False, filename = filename)
+        new = cls(init_new=False, filename=filename)
 
         # TODO: Load metadata
         new.name = new.execute("SELECT value FROM info WHERE key='name'")[0]
-        new.description = new.execute("SELECT value FROM info WHERE key='description'")[0]
+        new.description = new.execute(
-        new._time_system = new.execute("SELECT value FROM info WHERE key='time_system'")[0]
+            "SELECT value FROM info WHERE key='description'")[0]
+        new._time_system = new.execute(
+            "SELECT value FROM info WHERE key='time_system'")[0]
         new._date = datetime.fromtimestamp(
             float(new.execute("SELECT value FROM info WHERE key='date'")[0])
         )
 
         new.creation_date = datetime.fromtimestamp(
-            float(new.execute("SELECT value FROM info WHERE key='creation_date'")[0])
+            float(new.execute(
+                "SELECT value FROM info WHERE key='creation_date'")[0])
         )
         new.last_save_date = datetime.fromtimestamp(
-            float(new.execute("SELECT value FROM info WHERE key='last_save_date'")[0])
+            float(new.execute(
+                "SELECT value FROM info WHERE key='last_save_date'")[0])
         )
 
         # Load river data
         new._river = River._sql_load(
             lambda sql: new.execute(
                 sql,
-                fetch_one = False,
+                fetch_one=False,
-                commit = True
+                commit=True
             ),
-            data = {"status": new.status}
+            data={"status": new.status}
         )
 
         return new
 
     def _save(self):
-        self.execute(f"UPDATE info SET value='{self._sql_format(self.name)}' WHERE key='name'")
+        self.execute(
-        self.execute(f"UPDATE info SET value='{self._sql_format(self.description)}' WHERE key='description'")
+            f"UPDATE info SET " +
-        self.execute(f"UPDATE info SET value='{self._time_system}' WHERE key='time_system'")
+            f"value='{self._sql_format(self.name)}' WHERE key='name'"
-        self.execute(f"UPDATE info SET value='{timestamp(self._date)}' WHERE key='date'")
+        )
-        self.execute(f"UPDATE info SET value='{timestamp(self.creation_date)}' WHERE key='creation_date'")
+        self.execute(
-        self.execute(f"UPDATE info SET value='{timestamp(self.last_save_date)}' WHERE key='last_save_date'")
+            f"UPDATE info SET " +
+            f"value='{self._sql_format(self.description)}' " +
+            "WHERE key='description'"
+        )
+        self.execute(
+            f"UPDATE info SET " +
+            f"value='{self._time_system}' WHERE key='time_system'"
+        )
+        self.execute(
+            f"UPDATE info SET " +
+            f"value='{timestamp(self._date)}' WHERE key='date'"
+        )
+        self.execute(
+            f"UPDATE info SET " +
+            f"value='{timestamp(self.creation_date)}' " +
+            "WHERE key='creation_date'"
+        )
+        self.execute(
+            f"UPDATE info SET " +
+            f"value='{timestamp(self.last_save_date)}' " +
+            "WHERE key='last_save_date'"
+        )
 
         self._save_submodel([self._river])
         self.commit()
+
+    def close(self):
+        """Close db connection
+
+        Returns:
+            Nothing.
+        """
+        self._close()

src/Model/Tools/PamhyrDB.py

@@ -1,4 +1,4 @@
-# DB.py -- Pamhyr abstract model database classes
+# PamhyrDB.py -- Pamhyr abstract model database classes
 # Copyright (C) 2023  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
@@ -28,10 +28,12 @@ from Model.Except import NotImplementedMethodeError
 logger = logging.getLogger()
 
 # Top level model class
+
+
 class SQLModel(SQL):
     _sub_classes = []
 
-    def _init_db_file(self, db, is_new = True):
+    def _init_db_file(self, db, is_new=True):
         exists = Path(db).exists()
 
         if exists and is_new:
@@ -48,15 +50,14 @@ class SQLModel(SQL):
             self._update()      # Update db scheme if necessary
             # self._load()        # Load data
 
-
+    def __init__(self, filename=None):
-    def __init__(self, filename = None):
         self._db = None
 
     def _create_submodel(self):
-        fn = lambda sql: self.execute(
+        def fn(sql): return self.execute(
             sql,
-            fetch_one = False,
+            fetch_one=False,
-            commit = False
+            commit=False
         )
 
         for cls in self._sub_classes:
@@ -69,10 +70,10 @@ class SQLModel(SQL):
         raise NotImplementedMethodeError(self, self._create)
 
     def _update_submodel(self, version):
-        fn = lambda sql: self.execute(
+        def fn(sql): return self.execute(
             sql,
-            fetch_one = False,
+            fetch_one=False,
-            commit = False
+            commit=False
         )
 
         ok = True
@@ -85,11 +86,11 @@ class SQLModel(SQL):
     def _update(self):
         raise NotImplementedMethodeError(self, self._update)
 
-    def _save_submodel(self, objs, data = None):
+    def _save_submodel(self, objs, data=None):
-        fn = lambda sql: self.execute(
+        def fn(sql): return self.execute(
             sql,
-            fetch_one = False,
+            fetch_one=False,
-            commit = False
+            commit=False
         )
 
         ok = True
@@ -103,18 +104,20 @@ class SQLModel(SQL):
         raise NotImplementedMethodeError(self, self._save)
 
     @classmethod
-    def _load(cls, filename = None):
+    def _load(cls, filename=None):
         raise NotImplementedMethodeError(cls, cls._load)
 
 # Sub model class
+
+
 class SQLSubModel(object):
     _sub_classes = []
 
     def _sql_format(self, value):
         # Replace ''' by ''' to preserve SQL injection
-        if type(value) == str:
+        if value is str:
             value = value.replace("'", "'")
-        elif type(value) == bool:
+        elif value is bool:
             value = 'TRUE' if value else 'FALSE'
         return value
 
@@ -154,7 +157,7 @@ class SQLSubModel(object):
         raise NotImplementedMethodeError(cls, cls._sql_update)
 
     @classmethod
-    def _sql_load(cls, execute, data = None):
+    def _sql_load(cls, execute, data=None):
         """Load instance of this class from SQL data base
 
         Args:
@@ -166,11 +169,11 @@ class SQLSubModel(object):
         """
         raise NotImplementedMethodeError(cls, cls._sql_load)
 
-    def _save_submodel(self, execute, objs, data = None):
+    def _save_submodel(self, execute, objs, data=None):
         for o in objs:
-            o._sql_save(execute, data = data)
+            o._sql_save(execute, data=data)
 
-    def _sql_save(self, execute, data = None):
+    def _sql_save(self, execute, data=None):
         """Save class data to data base
 
         Args:

src/Model/Tools/PamhyrDict.py

@@ -0,0 +1,74 @@
+# PamhyrDict.py -- Pamhyr abstract dict for model classes
+# Copyright (C) 2023  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-
+
+import logging
+
+from copy import copy
+from tools import trace, timer
+
+from Model.Tools.PamhyrDB import SQLSubModel
+from Model.Except import NotImplementedMethodeError
+
+logger = logging.getLogger()
+
+
+class PamhyrModelDict(SQLSubModel):
+    _sub_classes = []
+
+    def __init__(self, status=None):
+        super(PamhyrModelDict, self).__init__()
+
+        self._status = status
+
+        self._dict = {}
+
+    @classmethod
+    def _sql_create(cls, execute):
+        return cls._create_submodel(execute)
+
+    @classmethod
+    def _sql_update(cls, execute, version):
+        return cls._update_submodel(execute, version)
+
+    @classmethod
+    def _sql_load(cls, execute, data=None):
+        raise NotImplementedMethodeError(cls, cls._sql_load)
+
+    def _sql_save(self, execute, data=None):
+        raise NotImplementedMethodeError(self, self._sql_save)
+
+    def __len__(self):
+        return len(self._dict)
+
+    def is_defined(self, key):
+        return key in self._dict
+
+    def set(self, key, new):
+        self._dict[key] = new
+        self._status.modified()
+
+    def get(self, key):
+        if key in self._dict:
+            return self._dict[key]
+
+        new = self.new(key)
+        self.set(key, new)
+        return new
+
+    def new(self, key):
+        raise NotImplementedMethodeError(self, self.new)

src/Model/Tools/PamhyrList.py

@@ -0,0 +1,241 @@
+# PamhyrList.py -- Pamhyr Abstract List object for the Model
+# Copyright (C) 2023  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-
+
+import logging
+
+from copy import copy
+from tools import trace, timer
+
+from Model.Tools.PamhyrDB import SQLSubModel
+from Model.Except import NotImplementedMethodeError
+
+logger = logging.getLogger()
+
+
+class PamhyrModelList(SQLSubModel):
+    _sub_classes = [
+    ]
+
+    def __init__(self, status=None):
+        super(PamhyrModelList, self).__init__()
+
+        self._status = status
+        self._lst = []
+
+    #######
+    # SQL #
+    #######
+
+    @classmethod
+    def _sql_create(cls, execute):
+        return cls._create_submodel(execute)
+
+    @classmethod
+    def _sql_update(cls, execute, version):
+        return cls._update_submodel(execute, version)
+
+    @classmethod
+    def _sql_load(cls, execute, data=None):
+        raise NotImplementedMethodeError(cls, cls._sql_load)
+
+    def _sql_save(self, execute, data=None):
+        raise NotImplementedMethodeError(self, self._sql_save)
+
+    ################
+    # MODEL METHOD #
+    ################
+
+    @property
+    def lst(self):
+        return self._lst
+
+    def __len__(self):
+        return len(self.lst)
+
+    def get(self, row):
+        return self._lst[row]
+
+    def set(self, row, new):
+        self._lst[row] = new
+        if self._status is not None:
+            self._status.modified()
+
+    def new(self, index):
+        """Create new elements and add it to list
+
+        Args:
+            index: The index of new elements
+
+        Returns:
+            The new elements
+        """
+        raise NotImplementedMethodeError(self, self.new)
+
+    def insert(self, index, new):
+        self._lst.insert(index, new)
+
+        if self._status is not None:
+            self._status.modified()
+
+    def delete(self, lst):
+        for el in lst:
+            self._lst.remove(el)
+
+        if self._status is not None:
+            self._status.modified()
+
+    def delete_i(self, indexes):
+        lst = list(
+            map(
+                lambda x: x[1],
+                filter(
+                    lambda x: x[0] in indexes,
+                    enumerate(self._lst)
+                )
+            )
+        )
+        self.delete(lst)
+
+    def sort(self, reverse=False, key=None):
+        self._lst.sort(reverse=reverse, key=key)
+
+        if self._status is not None:
+            self._status.modified()
+
+    def move_up(self, index):
+        if index < len(self._lst):
+            next = index - 1
+
+            lst = self._lst
+            lst[index], lst[next] = lst[next], lst[index]
+
+            if self._status is not None:
+                self._status.modified()
+
+    def move_down(self, index):
+        if index >= 0:
+            prev = index + 1
+
+            lst = self._lst
+            lst[index], lst[prev] = lst[prev], lst[index]
+
+            if self._status is not None:
+                self._status.modified()
+
+
+class PamhyrModelListWithTab(SQLSubModel):
+    _tabs_list = []
+    _sub_classes = [
+    ]
+
+    def __init__(self, status=None):
+        super(PamhyrModelListWithTab, self).__init__()
+
+        self._status = status
+        self._tabs = {}
+        for tab in self._tabs_list:
+            self._tabs[tab] = []
+
+    #######
+    # SQL #
+    #######
+
+    @classmethod
+    def _sql_create(cls, execute):
+        return cls._create_submodel(execute)
+
+    @classmethod
+    def _sql_update(cls, execute, version):
+        return cls._update_submodel(execute, version)
+
+    @classmethod
+    def _sql_load(cls, execute, data=None):
+        raise NotImplementedMethodeError(cls, cls._sql_load)
+
+    def _sql_save(self, execute, data=None):
+        raise NotImplementedMethodeError(self, self._sql_save)
+
+    ################
+    # MODEL METHOD #
+    ################
+
+    def len(self, lst):
+        return len(self._tabs[lst])
+
+    def get_tab(self, lst):
+        return self._tabs[lst].copy()
+
+    def get(self, lst, row):
+        return self._tabs[lst][row]
+
+    def set(self, lst, row, new):
+        self._tabs[lst][row] = new
+        self._status.modified()
+
+    def new(self, lst, index):
+        """Create new elements and add it to list
+
+        Args:
+            lst: The tab name
+            index: The index of new elements
+
+        Returns:
+            The new elements
+        """
+        raise NotImplementedMethodeError(self, self.new)
+
+    def insert(self, lst, index, new):
+        self._tabs[lst].insert(index, new)
+        self._status.modified()
+
+    def delete(self, lst, els):
+        for el in els:
+            self._tabs[lst].remove(el)
+        self._status.modified()
+
+    def delete_i(self, lst, indexes):
+        els = list(
+            map(
+                lambda x: x[1],
+                filter(
+                    lambda x: x[0] in indexes,
+                    enumerate(self._tabs[lst])
+                )
+            )
+        )
+        self.delete(lst, els)
+
+    def sort(self, lst, reverse=False, key=None):
+        self._tabs[lst].sort(reverse=reverse, key=key)
+        self._status.modified()
+
+    def move_up(self, lst, index):
+        if index < len(self._tabs[lst]):
+            next = index - 1
+
+            lst = self._tabs[lst]
+            lst[index], lst[next] = lst[next], lst[index]
+            self._status.modified()
+
+    def move_down(self, lst, index):
+        if index >= 0:
+            prev = index + 1
+
+            lst = self._tabs[lst]
+            lst[index], lst[prev] = lst[prev], lst[index]
+            self._status.modified()

src/Model/__init__.py

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-

src/Model/test_Model.py

@@ -0,0 +1,110 @@
+# test_Model.py -- Pamhyr
+# Copyright (C) 2023  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-
+
+import os
+import unittest
+import tempfile
+
+from Model.Saved import SavedStatus
+from Model.Study import Study
+from Model.River import River
+
+
+class StudyTestCase(unittest.TestCase):
+    def test_create_study(self):
+        study = Study.new("foo", "bar")
+        self.assertEqual(study.name, "foo")
+        self.assertEqual(study.description, "bar")
+
+    def test_open_study(self):
+        study = Study.open("../tests_cases/Enlargement/Enlargement.pamhyr")
+        self.assertNotEqual(study, None)
+        self.assertEqual(study.name, "Enlargement")
+
+    def test_save_open_study(self):
+        study = Study.new("foo", "bar")
+        dir = tempfile.mkdtemp()
+        f = os.path.join(dir, "foo.pamhyr")
+
+        # Save study
+        study.filename = f
+        study.save()
+        study.close()
+
+        # Reopen study
+        study = Study.open(f)
+
+        # Check
+        self.assertNotEqual(study, None)
+        self.assertEqual(study.name, "foo")
+        self.assertEqual(study.description, "bar")
+
+    def test_create_study_river(self):
+        study = Study.new("foo", "bar")
+        self.assertNotEqual(study.river, None)
+
+
+class RiverTestCase(unittest.TestCase):
+    def test_create_river(self):
+        status = SavedStatus()
+        river = River(status=status)
+
+        self.assertNotEqual(river, None)
+
+    def test_create_river_nodes(self):
+        status = SavedStatus()
+        river = River(status=status)
+
+        self.assertNotEqual(river, None)
+
+        # Add nodes
+        n0 = river.add_node()
+        n1 = river.add_node(x=1.0, y=0.0)
+        n2 = river.add_node(x=0.0, y=1.0)
+
+        # Checks
+        self.assertEqual(river.nodes_counts(), 3)
+
+        nodes = river.nodes()
+        self.assertEqual(nodes[0], n0)
+        self.assertEqual(nodes[1], n1)
+        self.assertEqual(nodes[2], n2)
+
+    def test_create_river_edges(self):
+        status = SavedStatus()
+        river = River(status=status)
+
+        self.assertNotEqual(river, None)
+
+        # Add nodes
+        n0 = river.add_node()
+        n1 = river.add_node(x=1.0, y=0.0)
+        n2 = river.add_node(x=0.0, y=1.0)
+
+        self.assertEqual(river.nodes_counts(), 3)
+
+        # Add edges
+        e0 = river.add_edge(n0, n1)
+        e1 = river.add_edge(n1, n2)
+
+        # Checks
+        self.assertEqual(river.edges_counts(), 2)
+
+        edges = river.edges()
+        self.assertEqual(edges[0], e0)
+        self.assertEqual(edges[1], e1)

src/Scripts/AScript.py

@@ -0,0 +1,37 @@
+# AScript.py -- Pamhyr abstract script class
+# Copyright (C) 2023  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-
+
+from Model.Except import NotImplementedMethodeError
+
+
+class AScript(object):
+    name = ""
+    description = ""
+
+    def __init__(self, app, conf, args):
+        super(AScript, self).__init__()
+
+        self._app = app
+        self._conf = conf
+        self._args = args.copy()
+
+    def usage(self):
+        raise NotImplementedMethodeError(self, self.usage)
+
+    def run(self):
+        raise NotImplementedMethodeError(self, self.run)

src/Scripts/Hello.py

@@ -0,0 +1,34 @@
+# Hello.py -- Pamhyr
+# Copyright (C) 2023  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-
+
+import logging
+from Scripts.AScript import AScript
+
+logger = logging.getLogger()
+
+
+class ScriptHello(AScript):
+    name = "Hello"
+    description = "Display hello"
+
+    def usage(self):
+        logger.info(f"Usage : {self._args[0]} hello")
+
+    def run(self):
+        logger.info("Hello from Pamhyr2 script !")
+        return 0

src/Scripts/ListSolver.py

@@ -0,0 +1,38 @@
+# ListSolver.py -- Pamhyr
+# Copyright (C) 2023  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-
+
+import os
+import logging
+
+from Scripts.AScript import AScript
+
+logger = logging.getLogger()
+
+
+class ScriptListSolver(AScript):
+    name = "ListSolver"
+    description = "List configured solver(s) for Pamhyr2"
+
+    def usage(self):
+        logger.info(f"Usage : {self._args[0]} {self._args[1]}")
+
+    def run(self):
+        for solver in self._conf.solvers:
+            print(f"{solver.name:<16} ({solver.type}): {solver.description}")
+
+        return 0

src/Scripts/P3DST.py

@@ -0,0 +1,116 @@
+# P3DST.py -- Pamhyr
+# Copyright (C) 2023  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-
+
+import sys
+import logging
+
+from matplotlib import pyplot as plt
+from numpy import mean
+
+from Scripts.AScript import AScript
+
+from Model.Saved import SavedStatus
+from Model.Geometry.Reach import Reach
+
+logger = logging.getLogger()
+
+
+class Script3DST(AScript):
+    name = "3DST"
+    description = "Display a 3D plot of a river reach from ST file"
+
+    def usage(self):
+        logger.info(f"Usage : {self._args[0]} 3DST <INPUT_ST_FILE>")
+
+    def set_axes_equal(self, ax):
+        """Make axes of 3D plot have equal scale
+
+        Make axes of 3D plot have equal scale so that spheres appear
+        as spheres, cubes as cubes, etc.. This is one possible
+        solution to Matplotlib's ax.set_aspect('equal') and
+        ax.axis('equal') not working for 3D.
+
+        Args:
+            ax: a matplotlib axis, e.g., as output from plt.gca()
+
+        Returns:
+            The input axis
+        """
+        x_limits = ax.get_xlim3d()
+        y_limits = ax.get_ylim3d()
+        z_limits = ax.get_zlim3d()
+
+        x_range = abs(x_limits[1] - x_limits[0])
+        x_middle = mean(x_limits)
+        y_range = abs(y_limits[1] - y_limits[0])
+        y_middle = mean(y_limits)
+        z_range = abs(z_limits[1] - z_limits[0])
+        z_middle = mean(z_limits)
+
+        # The plot bounding box is a sphere in the sense of the infinity
+        # norm, hence I call half the max range the plot radius.
+        plot_radius = 0.5*max([x_range, y_range, z_range])
+
+        ax.set_xlim3d([x_middle - plot_radius, x_middle + plot_radius])
+        ax.set_ylim3d([y_middle - plot_radius, y_middle + plot_radius])
+        ax.set_zlim3d([z_middle - plot_radius, z_middle + plot_radius])
+
+        return ax
+
+    def run(self):
+        try:
+            st_file = self._args[2]
+            logger.info(f"Use ST file: {st_file}")
+        except Exception as e:
+            logger.error(f"Arguments parcing: {str(e)}")
+            return 1
+
+        try:
+            status = SavedStatus()
+
+            my_reach = Reach(status=status)
+            my_reach.import_geometry(st_file)
+            my_reach.compute_guidelines()
+
+            ax = plt.figure().add_subplot(projection="3d")
+            logger.info(my_reach.get_x())
+            for x, y, z in zip(
+                    my_reach.get_x(),
+                    my_reach.get_y(),
+                    my_reach.get_z()
+            ):
+                ax.plot(x, y, z, color='r', lw=1.)
+
+            for x, y, z in zip(
+                    my_reach.get_guidelines_x(),
+                    my_reach.get_guidelines_y(),
+                    my_reach.get_guidelines_z()
+            ):
+                ax.plot(x, y, z, color='b', lw=1.)
+
+            ax.set_xlabel('X')
+            ax.set_ylabel('Y')
+            ax.set_zlabel('Z')
+            plt.tight_layout()
+            self.set_axes_equal(ax)
+            plt.show()
+
+            return 0
+        except Exception as e:
+            logger.error(str(e))
+            return 1

src/Scripts/Run.py

@@ -0,0 +1,113 @@
+# Run.py -- Pamhyr
+# Copyright (C) 2023  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-
+
+import os
+import logging
+
+from queue import Queue
+
+from PyQt5.QtCore import QProcess
+
+from Scripts.AScript import AScript
+from Model.Study import Study
+
+logger = logging.getLogger()
+
+
+class ScriptRun(AScript):
+    name = "Run"
+    description = "Run solver on Pamhyr2 a study"
+
+    def usage(self):
+        logger.info(
+            f"Usage : {self._args[0]} {self._args[1]} " +
+            "<SOLVER> <STUDY>"
+        )
+
+    def run(self):
+        if len(self._args) < 4:
+            return 1
+
+        command = self._args[1]
+        solver_name = self._args[2]
+        study_file = os.path.abspath(
+            self._args[3]
+        )
+
+        try:
+            solver = next(
+                filter(
+                    lambda solver: solver.name == solver_name,
+                    self._conf.solvers
+                )
+            )
+        except Exception as e:
+            logger.error(f"No solver found: {e}")
+            return 2
+
+        study = Study.open(study_file)
+
+        self._solver = solver
+        self._study = study
+
+        logger.info(
+            f"Run {solver.name} ({solver.type}) " +
+            "on study '{study.name}' ({study_file})"
+        )
+
+        # Workdir
+        workdir = os.path.join(
+            os.path.dirname(study.filename),
+            "_PAMHYR_",
+            study.name.replace(" ", "_"),
+            solver.name.replace(" ", "_")
+        )
+        os.makedirs(workdir, exist_ok=True)
+        logger.info(f"Set working dir to {workdir}")
+
+        # Preparate process
+        p = QProcess(None)
+        p.setWorkingDirectory(workdir)
+
+        self._q = Queue()
+
+        # Export and Run
+        logger.info(f"~Export~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~")
+        solver.export(study, workdir, qlog=self._q)
+
+        while self._q.qsize() != 0:
+            s = self._q.get()
+            logger.info(s)
+
+        if command == "run":
+            logger.info(f"~Run~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~")
+            solver.run(
+                study,
+                process=p,
+                output_queue=self._q
+            )
+            p.waitForFinished()
+
+        logger.info(f"~End~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~")
+
+        return 0
+
+
+class ScriptExport(ScriptRun):
+    name = "Export"
+    description = "Export Pamhyr2 study for solver"

src/Scripts/plot_3DST.py

@@ -1,68 +0,0 @@
-# plot_3DST.py -- Pamhyr
-# Copyright (C) 2023  INRAE
-#
-# This program is free software: you can redistribute it and/or modify
-# it under the terms of the GNU General Public License as published by
-# the Free Software Foundation, either version 3 of the License, or
-# (at your option) any later version.
-#
-# This program is distributed in the hope that it will be useful,
-# but WITHOUT ANY WARRANTY; without even the implied warranty of
-# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
-# GNU General Public License for more details.
-#
-# You should have received a copy of the GNU General Public License
-# along with this program.  If not, see <https://www.gnu.org/licenses/>.
-
-# -*- coding: utf-8 -*-
-
-# a lancer depuis src
-import sys
-from matplotlib import pyplot as plt
-from Model.Geometry.Reach import Reach
-from numpy import mean
-
-def set_axes_equal(ax):
-    '''Make axes of 3D plot have equal scale so that spheres appear as spheres,
-    cubes as cubes, etc..  This is one possible solution to Matplotlib's
-    ax.set_aspect('equal') and ax.axis('equal') not working for 3D.
-
-    Input
-      ax: a matplotlib axis, e.g., as output from plt.gca().
-    '''
-
-    x_limits = ax.get_xlim3d()
-    y_limits = ax.get_ylim3d()
-    z_limits = ax.get_zlim3d()
-
-    x_range = abs(x_limits[1] - x_limits[0])
-    x_middle = mean(x_limits)
-    y_range = abs(y_limits[1] - y_limits[0])
-    y_middle = mean(y_limits)
-    z_range = abs(z_limits[1] - z_limits[0])
-    z_middle = mean(z_limits)
-
-    # The plot bounding box is a sphere in the sense of the infinity
-    # norm, hence I call half the max range the plot radius.
-    plot_radius = 0.5*max([x_range, y_range, z_range])
-
-    ax.set_xlim3d([x_middle - plot_radius, x_middle + plot_radius])
-    ax.set_ylim3d([y_middle - plot_radius, y_middle + plot_radius])
-    ax.set_zlim3d([z_middle - plot_radius, z_middle + plot_radius])
-
-st_file = sys.argv[1]
-my_reach = Reach(None)
-my_reach.import_geometry(st_file)
-my_reach.compute_guidelines()
-
-ax = plt.figure().add_subplot(projection="3d")
-for x, y, z in zip(my_reach.get_x(), my_reach.get_y(), my_reach.get_z()):
-    ax.plot(x, y, z, color='r', lw=1.)
-for x, y, z in zip(my_reach.get_guidelines_x(), my_reach.get_guidelines_y(), my_reach.get_guidelines_z()):
-    ax.plot(x, y, z, color='b', lw=1.)
-ax.set_xlabel('X')
-ax.set_ylabel('Y')
-ax.set_zlabel('Z')
-plt.tight_layout()
-set_axes_equal(ax)
-plt.show()

src/Solver/ASolver.py

@@ -22,9 +22,10 @@ import logging
 from tools import timer
 
 try:
+    # Installation allow Unix-like signal
     from signal import SIGTERM, SIGSTOP, SIGCONT
     _signal = True
-except:
+except Exception:
     _signal = False
 
 from enum import Enum
@@ -36,12 +37,14 @@ from Model.Results.River.River import River, Reach, Profile
 
 logger = logging.getLogger()
 
+
 class STATUS(Enum):
     NOT_LAUNCHED = -1
     STOPED = 0
     RUNNING = 1
     PAUSED = 5
 
+
 class AbstractSolver(object):
     _type = ""
 
@@ -154,7 +157,7 @@ class AbstractSolver(object):
     # Export #
     ##########
 
-    def export(self, study, repertory, qlog = None):
+    def export(self, study, repertory, qlog=None):
         raise NotImplementedMethodeError(self, self.export)
 
     def cmd_args(self, study):
@@ -176,6 +179,14 @@ class AbstractSolver(object):
         """
         raise NotImplementedMethodeError(self, self.input_param)
 
+    def output_param(self):
+        """Return output command line parameter(s)
+
+        Returns:
+            Returns output parameter(s) string
+        """
+        raise NotImplementedMethodeError(self, self.output_param)
+
     def log_file(self):
         """Return log file name
 
@@ -189,8 +200,8 @@ class AbstractSolver(object):
     ###########
 
     @timer
-    def results(self, study, repertory, qlog = None):
+    def results(self, study, repertory, qlog=None):
-        results = Results(study = study)
+        results = Results(study=study)
         return results
 
     #######
@@ -201,11 +212,11 @@ class AbstractSolver(object):
         return os.path.abspath(
             os.path.join(
                 os.path.dirname(__file__),
-                ".."
+                "..", ".."
             )
         )
 
-    def _format_command(self, study, cmd, path = ""):
+    def _format_command(self, study, cmd, path=""):
         """Format command line
 
         Args:
@@ -216,10 +227,10 @@ class AbstractSolver(object):
             The executable and list of arguments
         """
         # HACK: Works in most case... Trust me i'm an engineer
-
         cmd = cmd.replace("@install_dir", self._install_dir())
-        cmd = cmd.replace("@path", path.replace(" ", "\ "))
+        cmd = cmd.replace("@path", path.replace(" ", "%20"))
         cmd = cmd.replace("@input", self.input_param())
+        cmd = cmd.replace("@output", self.output_param())
         cmd = cmd.replace("@dir", self._process.workingDirectory())
         cmd = cmd.replace("@args", " ".join(self.cmd_args(study)))
 
@@ -228,7 +239,7 @@ class AbstractSolver(object):
         if cmd[0] == "\"":
             # Command line executable path is between " char
             cmd = cmd.split("\"")
-            exe = cmd[1].replace("\ ", " ")
+            exe = cmd[1].replace("%20", " ")
             args = list(
                 filter(
                     lambda s: s != "",
@@ -237,12 +248,12 @@ class AbstractSolver(object):
             )
         else:
             # We suppose the command line executable path as no space char
-            cmd = cmd.replace("\ ", "&_&").split(" ")
+            cmd = cmd.replace("\\ ", "&_&").split(" ")
             exe = cmd[0].replace("&_&", " ")
             args = list(
                 filter(
                     lambda s: s != "",
-                    map(lambda s: s.replace("&_&", "\ "), cmd[1:])
+                    map(lambda s: s.replace("&_&", " "), cmd[1:])
                 )
             )
 
@@ -284,6 +295,7 @@ class AbstractSolver(object):
         self._process.start(
             exe, args,
         )
+        self._process.waitForStarted()
 
         self._status = STATUS.RUNNING
         return True
@@ -328,14 +340,17 @@ class AbstractSolver(object):
 
         self._run_next(study)
 
-    def run(self, study, process = None, output_queue = None):
+    def run(self, study, process=None, output_queue=None):
+        self._study = study
+
         if process is not None:
             self._process = process
         if output_queue is not None:
             self._output = output_queue
 
         self._process.readyRead.connect(self._data_ready)
-        self._process.finished.connect(lambda c, s: self._finished(study, c, s))
+        self._process.finished.connect(
+            lambda c, s: self._finished(study, c, s))
 
         self._runs = [
             self.run_input_data_fomater,
@@ -356,8 +371,9 @@ class AbstractSolver(object):
         self._status = STATUS.STOPED
         return True
 
-    def start(self, study, process = None):
+    def start(self, study, process=None):
         if _signal:
+            # Solver is PAUSED, so continue execution
             if self._status == STATUS.PAUSED:
                 os.kill(self._process.pid(), SIGCONT)
                 self._status = STATUS.RUNNING
@@ -371,6 +387,7 @@ class AbstractSolver(object):
             if self._process is None:
                 return False
 
+            # Send SIGSTOP to PAUSED solver
             os.kill(self._process.pid(), SIGSTOP)
             self._status = STATUS.PAUSED
             return True

src/Solver/GenericSolver.py

@@ -20,6 +20,7 @@ from Solver.ASolver import (
     AbstractSolver, STATUS
 )
 
+
 class GenericSolver(AbstractSolver):
     _type = "generic"
 

src/Solver/Mage.py

@@ -30,6 +30,7 @@ from Model.Results.River.River import River, Reach, Profile
 
 logger = logging.getLogger()
 
+
 def mage_file_open(filepath, mode):
     f = open(filepath, mode)
 
@@ -39,6 +40,7 @@ def mage_file_open(filepath, mode):
 
     return f
 
+
 class Mage(AbstractSolver):
     _type = "mage"
 
@@ -51,7 +53,6 @@ class Mage(AbstractSolver):
         self._cmd_solver = "@path @input -o @output"
         self._cmd_output = ""
 
-
     @classmethod
     def default_parameters(cls):
         lst = super(Mage, cls).default_parameters()
@@ -87,8 +88,8 @@ class Mage(AbstractSolver):
     @classmethod
     def checkers(cls):
         lst = [
-            MageNetworkGraphChecker(connectivity = True),
+            MageNetworkGraphChecker(connectivity=True),
-            MageNetworkGraphChecker(connectivity = False)
+            MageNetworkGraphChecker(connectivity=False)
         ]
 
         return lst
@@ -98,16 +99,20 @@ class Mage(AbstractSolver):
     ##########
 
     def cmd_args(self, study):
-        l = super(Mage, self).cmd_args(study)
+        lst = super(Mage, self).cmd_args(study)
 
-        l.append("-r")
+        lst.append("-r")
 
-        return l
+        return lst
 
     def input_param(self):
         name = self._study.name
         return f"{name}.REP"
 
+    def output_param(self):
+        name = self._study.name
+        return f"{name}.BIN"
+
     def log_file(self):
         name = self._study.name
         return f"{name}.TRA"
@@ -136,7 +141,10 @@ class Mage(AbstractSolver):
             if edge._name == "":
                 name = f"Reach_{edge.id}"
 
-            with mage_file_open(os.path.join(repertory, "net", f"{name}.ST"), "w+") as f:
+            with mage_file_open(
+                    os.path.join(repertory, "net", f"{name}.ST"),
+                    "w+"
+            ) as f:
                 files.append(str(os.path.join("net", f"{name}.ST")))
 
                 cnt_num = 1
@@ -145,42 +153,64 @@ class Mage(AbstractSolver):
                     c1 = f"{profile.code1:>6}"
                     c2 = f"{profile.code2:>6}"
                     t = f"{len(profile.points):>6}"
-                    kp = f"{profile.kp:>13.4f}"
+                    kp = f"{profile.kp:>12f}"[0:12]
                     pname = profile.name
                     if profile.name == "":
-                        pname = f"p{profile.id:>3}".replace(" ", "p")
+                        # Generate name from profile id prefixed with
-                    name = f"{pname}"
+                        # 'p' (and replace space char with '0' char)
+                        pname = f"p{profile.id:>3}".replace(" ", "0")
+                    name = f"{pname:<19}"
 
+                    # Generate sediment additional data if available
                     sediment = ""
                     if profile.sl is not None:
                         if not any(filter(lambda f: ".GRA" in f, files)):
                             files.append(gra_file)
 
+                        # Number of layers
                         nl = len(profile.sl)
                         sediment = f" {nl:>3}"
-                        for l in profile.sl.layers:
-                            sediment += f" {l.height:>10} {l.d50:>10} {l.sigma:>10} {l.critical_constraint:>10}"
 
-                    f.write(f"{num}{c1}{c2}{t}{kp}  {name} {sediment}\n")
+                        # Layers data
+                        for layer in profile.sl.layers:
+                            sediment += (
+                                f" {layer.height:>10} {layer.d50:>10} " +
+                                f"{layer.sigma:>10} " +
+                                f"{layer.critical_constraint:>10}"
+                            )
+
+                    # Profile header line
+                    f.write(f"{num}{c1}{c2}{t} {kp} {name} {sediment}\n")
                     cnt_num += 1
 
+                    # Points
                     for point in profile.points:
-                        x = f"{point.x:>13.4f}"
+                        x = f"{point.x:<12f}"[0:12]
-                        y = f"{point.y:>13.4f}"
+                        y = f"{point.y:<12f}"[0:12]
-                        z = f"{point.z:>13.4f}"
+                        z = f"{point.z:<12f}"[0:12]
                         n = f"{point.name:<3}"
 
+                        # Generate sediment additional data if available
                         sediment = ""
                         prev = point.z
                         if point.sl is not None:
+                            # Number of layers
                             nl = len(point.sl)
                             sediment = f"{nl:>3}"
-                            for l in point.sl.layers:
-                                prev = round(prev - l.height, 5)
-                                sediment += f" {prev:>10} {l.d50:>10} {l.sigma:>10} {l.critical_constraint:>10}"
 
-                        f.write(f"{x}{y}{z} {n} {sediment}\n")
+                            # Layers data
+                            for layer in point.sl.layers:
+                                prev = round(prev - layer.height, 5)
+                                sediment += (
+                                    f" {prev:>10} {layer.d50:>10} " +
+                                    f"{layer.sigma:>10} " +
+                                    f"{layer.critical_constraint:>10}"
+                                )
 
+                        # Point line
+                        f.write(f"{x} {y} {z} {n} {sediment}\n")
+
+                    # Profile last line
                     f.write(f"     999.9990     999.9990     999.9990\n")
 
         return files
@@ -210,7 +240,7 @@ class Mage(AbstractSolver):
                     v1 = d[1]
 
                     if t in ["HYD", "QSO", "LIM"]:
-                        v0 /= 60 # Convert first column to minute
+                        v0 /= 60  # Convert first column to minute
 
                     f.write(f"{v0:10}{v1:10}\n")
 
@@ -251,7 +281,10 @@ class Mage(AbstractSolver):
     #     if qlog is not None:
     #         qlog.put(f"Export LAT file")
 
-    #     with mage_file_open(os.path.join(repertory, f"{name}.LAT"), "w+") as f:
+    #     with mage_file_open(
+    #             os.path.join(repertory, f"{name}.LAT"),
+    #             "w+"
+    #     ) as f:
     #         files.append(f"{name}.LAT")
 
     #         name = f"{lateral.node.id:3}".replace(" ", "x")
@@ -391,13 +424,12 @@ class Mage(AbstractSolver):
                 if EXT in ["GRA"]:
                     f.write(f"{EXT} {file}\n")
 
-
     @timer
-    def export(self, study, repertory, qlog = None):
+    def export(self, study, repertory, qlog=None):
         self._study = study
         name = study.name.replace(" ", "_")
 
-        self._export_ST(study, repertory, qlog, name = name)
+        self._export_ST(study, repertory, qlog, name=name)
 
         return True
 
@@ -405,13 +437,17 @@ class Mage(AbstractSolver):
     # RESULTS #
     ###########
 
-    def read_bin(self, study, repertory, results, qlog = None, name="0"):
+    def read_bin(self, study, repertory, results, qlog=None, name="0"):
         return
 
     @timer
-    def results(self, study, repertory, qlog = None, name="0"):
+    def results(self, study, repertory, qlog=None, name="0"):
-        results = Results(study = study)
+        results = Results(
-
+            study=study,
+            solver=self,
+            repertory=repertory,
+            name=name,
+        )
         self.read_bin(study, repertory, results, qlog, name=name)
 
         return results
@@ -420,6 +456,7 @@ class Mage(AbstractSolver):
 # MAGE 7 #
 ##########
 
+
 class Mage7(Mage):
     _type = "mage7"
 
@@ -438,6 +475,7 @@ class Mage7(Mage):
 # MAGE 8 #
 ##########
 
+
 class Mage8(Mage):
     _type = "mage8"
 
@@ -476,15 +514,15 @@ class Mage8(Mage):
     ##########
 
     def cmd_args(self, study):
-        l = super(Mage8, self).cmd_args(study)
+        lst = super(Mage8, self).cmd_args(study)
 
         if study.river.has_sediment():
-            l.append("-c=3")
+            lst.append("-c=3")
 
-        return l
+        return lst
 
     @timer
-    def _export_PAR(self, study, repertory, qlog = None, name = "0"):
+    def _export_PAR(self, study, repertory, qlog=None, name="0"):
         files = []
 
         if qlog is not None:
@@ -503,7 +541,7 @@ class Mage8(Mage):
                 if name in ["command_line_arguments"]:
                     continue
 
-                if name is "mage_compute_reach_volume_balance":
+                if name == "mage_compute_reach_volume_balance":
                     value = "O" if value == "y" else "N"
 
                 f.write(f"{name} {value}\n")
@@ -511,7 +549,7 @@ class Mage8(Mage):
         return files
 
     @timer
-    def _export_NET(self, study, repertory, qlog = None, name="0"):
+    def _export_NET(self, study, repertory, qlog=None, name="0"):
         files = []
 
         if qlog is not None:
@@ -579,9 +617,8 @@ class Mage8(Mage):
 
         return files
 
-
     @timer
-    def export(self, study, repertory, qlog = None, name="0"):
+    def export(self, study, repertory, qlog=None, name="0"):
         self._study = study
         name = study.name.replace(" ", "_")
 
@@ -590,7 +627,8 @@ class Mage8(Mage):
         files = self._export_ST(study, repertory, qlog, name=name)
         files = files + self._export_PAR(study, repertory, qlog, name=name)
         files = files + self._export_NET(study, repertory, qlog, name=name)
-        files = files + self._export_bound_cond(study, repertory, qlog, name=name)
+        files = files + \
+            self._export_bound_cond(study, repertory, qlog, name=name)
         files = files + self._export_RUG(study, repertory, qlog, name=name)
         files = files + self._export_INI(study, repertory, qlog, name=name)
         self._export_REP(study, repertory, files, qlog, name=name)
@@ -602,17 +640,22 @@ class Mage8(Mage):
     ###########
 
     @timer
-    def read_bin(self, study, repertory, results, qlog = None, name="0"):
+    def read_bin(self, study, repertory, results, qlog=None, name="0"):
         fname = os.path.join(repertory, f"{name}.BIN")
         logger.info(f"read_bin: Start reading '{fname}' ...")
 
         with mage_file_open(fname, "r") as f:
-            newline = lambda: np.fromfile(f, dtype=np.int32, count=1)
+            def newline(): return np.fromfile(f, dtype=np.int32, count=1)
-            endline = lambda: np.fromfile(f, dtype=np.int32, count=1)
+            def endline(): return np.fromfile(f, dtype=np.int32, count=1)
 
-            read_int = lambda size: np.fromfile(f, dtype=np.int32, count=size)
+            def read_int(size): return np.fromfile(
-            read_float = lambda size: np.fromfile(f, dtype=np.float32, count=size)
+                f, dtype=np.int32, count=size)
-            read_float64 = lambda size: np.fromfile(f, dtype=np.float64, count=size)
+
+            def read_float(size): return np.fromfile(
+                f, dtype=np.float32, count=size)
+
+            def read_float64(size): return np.fromfile(
+                f, dtype=np.float64, count=size)
 
             # Meta data (1st line)
             newline()
@@ -686,7 +729,7 @@ class Mage8(Mage):
             # Data
             newline()
 
-            ip_to_r = lambda i: iprofiles[
+            def ip_to_r(i): return iprofiles[
                 next(
                     filter(
                         lambda k: k[0] <= i <= k[1],
@@ -694,14 +737,15 @@ class Mage8(Mage):
                     )
                 )
             ]
-            ip_to_ri = lambda r, i: i - reach_offset[r]
+            def ip_to_ri(r, i): return i - reach_offset[r]
 
             ts = set()
             end = False
             while not end:
                 n = read_int(1)[0]
                 timestamp = read_float64(1)[0]
-                key = bytearray(np.fromfile(f, dtype=np.byte, count=1)).decode()
+                key = bytearray(np.fromfile(
+                    f, dtype=np.byte, count=1)).decode()
                 data = read_float(n)
 
                 logger.debug(f"read_bin: timestamp = {timestamp} sec")
@@ -725,7 +769,7 @@ class Mage8(Mage):
             logger.info(f"read_bin: ... end with {len(ts)} timestamp read")
 
     @timer
-    def read_gra(self, study, repertory, results, qlog = None, name="0"):
+    def read_gra(self, study, repertory, results, qlog=None, name="0"):
         if not study.river.has_sediment():
             return
 
@@ -733,12 +777,17 @@ class Mage8(Mage):
         logger.info(f"read_gra: Start reading '{fname}' ...")
 
         with mage_file_open(fname, "r") as f:
-            newline = lambda: np.fromfile(f, dtype=np.int32, count=1)
+            def newline(): return np.fromfile(f, dtype=np.int32, count=1)
-            endline = lambda: np.fromfile(f, dtype=np.int32, count=1)
+            def endline(): return np.fromfile(f, dtype=np.int32, count=1)
 
-            read_int = lambda size: np.fromfile(f, dtype=np.int32, count=size)
+            def read_int(size): return np.fromfile(
-            read_float = lambda size: np.fromfile(f, dtype=np.float32, count=size)
+                f, dtype=np.int32, count=size)
-            read_float64 = lambda size: np.fromfile(f, dtype=np.float64, count=size)
+
+            def read_float(size): return np.fromfile(
+                f, dtype=np.float32, count=size)
+
+            def read_float64(size): return np.fromfile(
+                f, dtype=np.float64, count=size)
 
             # Meta data (1st line)
             newline()
@@ -810,7 +859,7 @@ class Mage8(Mage):
             endline()
 
             # Data
-            ip_to_r = lambda i: iprofiles[
+            def ip_to_r(i): return iprofiles[
                 next(
                     filter(
                         lambda k: k[0] <= i <= k[1],
@@ -818,7 +867,7 @@ class Mage8(Mage):
                     )
                 )
             ]
-            ip_to_ri = lambda r, i: i - reach_offset[r]
+            def ip_to_ri(r, i): return i - reach_offset[r]
 
             ts = set()
             ind = 0
@@ -878,11 +927,11 @@ class Mage8(Mage):
             logger.info(f"read_gra: ... end with {len(ts)} timestamp read")
 
     @timer
-    def results(self, study, repertory, qlog = None):
+    def results(self, study, repertory, qlog=None):
         self._study = study
         name = study.name.replace(" ", "_")
 
-        results = super(Mage8, self).results(study, repertory, qlog, name = name)
+        results = super(Mage8, self).results(study, repertory, qlog, name=name)
-        self.read_gra(study, repertory, results, qlog, name = name)
+        self.read_gra(study, repertory, results, qlog, name=name)
 
         return results

src/Solver/Solvers.py

@@ -24,9 +24,9 @@ from Solver.Mage import Mage7, Mage8
 _translate = QCoreApplication.translate
 
 solver_long_name = {
-    "generic": _translate("Solvers", "Generic"),
+    "generic": "Generic",
-    # "mage7": _translate("Solvers", "Mage version 7"),
+    # "mage7": "Mage v7",
-    "mage8": _translate("Solvers", "Mage version 8"),
+    "mage8": "Mage v8",
 }
 
 solver_type_list = {

src/View/About/Window.py

@@ -19,14 +19,18 @@
 import os
 import logging
 
-from View.ASubWindow import ASubWindow
+from View.Tools.PamhyrWindow import PamhyrDialog
 
 from PyQt5.QtCore import QCoreApplication
 
 _translate = QCoreApplication.translate
 logger = logging.getLogger()
 
-class AboutWindow(ASubWindow):
+
+class AboutWindow(PamhyrDialog):
+    _pamhyr_ui = "about"
+    _pamhyr_name = "About"
+
     def _path_file(self, filename):
         return os.path.abspath(
             os.path.join(
@@ -35,10 +39,14 @@ class AboutWindow(ASubWindow):
             )
         )
 
-
+    def __init__(self, study=None, config=None, parent=None):
-    def __init__(self, title="About", parent=None):
+        super(AboutWindow, self).__init__(
-        super(AboutWindow, self).__init__(name=title, ui="about", parent=parent)
+            title=_translate("About", "About"),
-        self.ui.setWindowTitle(title)
+            study=study,
+            config=config,
+            options=[],
+            parent=parent
+        )
 
         # Version
         with open(self._path_file("VERSION"), "r") as f:

src/View/BoundaryCondition/Edit/Plot.py

@@ -21,27 +21,32 @@ import logging
 from datetime import datetime
 
 from tools import timer, trace
-from View.Plot.APlot import APlot
+from View.Tools.PamhyrPlot import PamhyrPlot
 
 from PyQt5.QtCore import (
     QCoreApplication
 )
 
-from View.BoundaryCondition.Edit.translate import *
+from View.BoundaryCondition.Edit.translate import BCETranslate
 
 _translate = QCoreApplication.translate
 
 logger = logging.getLogger()
 
-class Plot(APlot):
+
-    def __init__(self, canvas=None, data=None,
+class Plot(PamhyrPlot):
-                 mode = "time", toolbar=None):
+    def __init__(self, mode="time", data=None,
+                 trad=None, canvas=None, toolbar=None,
+                 parent=None):
         super(Plot, self).__init__(
             canvas=canvas,
+            trad=trad,
             data=data,
-            toolbar=toolbar
+            toolbar=toolbar,
+            parent=parent
         )
 
+        self._table_headers = self._trad.get_dict("table_headers")
         self._mode = mode
 
     def custom_ticks(self):
@@ -68,8 +73,8 @@ class Plot(APlot):
                 map(
                     lambda v: str(
                         datetime.fromtimestamp(v[0]) - t0
-                    ).split(",")[0]\
+                    ).split(",")[0]
-                    .replace("days", _translate("BoundaryCondition", "days"))\
+                    .replace("days", _translate("BoundaryCondition", "days"))
                     .replace("day", _translate("BoundaryCondition", "day")),
                     fx
                 )
@@ -84,7 +89,6 @@ class Plot(APlot):
 
         self.canvas.axes.set_xticks(ticks=xx, labels=xt, rotation=45)
 
-
     @timer
     def draw(self):
         self.canvas.axes.cla()
@@ -109,22 +113,22 @@ class Plot(APlot):
         # Plot label
         header = self.data.header
         self.canvas.axes.set_xlabel(
-            table_headers[header[0]], color='black', fontsize=10
+            self._table_headers[header[0]], color='black', fontsize=10
         )
         self.canvas.axes.set_ylabel(
-            table_headers[header[1]], color='black', fontsize=10
+            self._table_headers[header[1]], color='black', fontsize=10
         )
 
         self.canvas.axes.autoscale_view(True, True, True)
         self.canvas.figure.tight_layout()
         self.canvas.figure.canvas.draw_idle()
-        #self.toolbar.update()
+        # self.toolbar.update()
 
         self._init = True
 
     @timer
     def update(self, ind=None):
-        if self._init == False:
+        if not self._init:
             self.draw()
             return
 

src/View/BoundaryCondition/Edit/Table.py

@@ -23,8 +23,7 @@ from datetime import date, time, datetime, timedelta
 
 from tools import trace, timer
 
-from View.ASubWindow import ASubMainWindow, AWidget
+from View.Tools.PamhyrTable import PamhyrTableModel
-from View.ListedSubWindow import ListedSubWindow
 
 from PyQt5.QtCore import (
     Qt, QVariant, QAbstractTableModel,
@@ -47,131 +46,13 @@ from View.BoundaryCondition.Edit.UndoCommand import (
     SortCommand, MoveCommand, PasteCommand,
     DuplicateCommand,
 )
-from View.BoundaryCondition.Edit.translate import *
 
 _translate = QCoreApplication.translate
 
 logger = logging.getLogger()
 
-class ExtendedTimeEdit(AWidget):
-    def __init__(self, parent=None):
-        super(ExtendedTimeEdit, self).__init__(
-            ui="extendedTimeEdit",
-            parent=parent
-        )
-        self.parent = parent
-
-        self.spinBox_days = self.find(QSpinBox, "spinBox_days")
-        self.timeEdit = self.find(QTimeEdit, "timeEdit")
-
-    def set_time(self, time):
-        days = 0
-        stime = time
-
-        # if ',' in time, time format is 'DD days, HH:MM:SS',
-        # otherelse is 'HH:MM:SS'
-        if "," in time:
-            s = time.strip().split(" ")
-            days = int(s[0])
-            stime = s[-1]
-
-        qtime = QTime.fromString(
-            stime,
-            "h:mm:ss"
-        )
-        self.spinBox_days.setValue(days)
-        self.timeEdit.setTime(qtime)
-
-    def get_time(self):
-        days = self.spinBox_days.value()
-        time = self.timeEdit.time().toPyTime()
-        secs = (
-            (time.hour * 3600) +
-            (time.minute * 60) +
-            time.second
-        )
-
-        return timedelta(days=days, seconds=secs)
-
-class ExtendedDateTimeEdit(AWidget):
-    def __init__(self, parent=None):
-        super(ExtendedDateTimeEdit, self).__init__(
-            ui="extendedDateTimeEdit",
-            parent=parent
-        )
-        self.parent = parent
-
-        self.dateTimeEdit = self.find(QDateTimeEdit, "dateTimeEdit")
-
-    def set_time(self, time):
-        qdatetime = QDateTime.fromString(
-            time,
-            "yyyy-MM-dd hh:mm:ss"
-        )
-        self.dateTimeEdit.setDateTime(qdatetime)
-
-    def get_time(self):
-        time = self.dateTimeEdit.dateTime().toPyDateTime()
-        return time
-
-class ExTimeDelegate(QItemDelegate):
-    def __init__(self, data=None, mode="time", parent=None):
-        super(ExTimeDelegate, self).__init__(parent)
-
-        self._data = data
-        self._mode = mode
-
-    def createEditor(self, parent, option, index):
-        if self._mode == "time":
-            self.editor = ExtendedTimeEdit(parent=parent)
-        else:
-            self.editor = ExtendedDateTimeEdit(parent=parent)
-        value = index.data(Qt.DisplayRole)
-        self.editor.set_time(value)
-        logger.debug(str(value))
-        return self.editor
-
-    def setModelData(self, editor, model, index):
-        time = editor.get_time()
-        if self._mode == "time":
-            model.setData(index, int(time.total_seconds()))
-        else:
-            logger.debug(str(time.timestamp()))
-            model.setData(index, int(time.timestamp()))
-        editor.close()
-        editor.deleteLater()
-
-    def updateEditorGeometry(self, editor, option, index):
-        r = QRect(option.rect)
-        if self.editor.windowFlags() & Qt.Popup and editor.parent() is not None:
-            r.setTopLeft(self.editor.parent().mapToGlobal(r.topLeft()))
-        editor.setGeometry(r)
-
-    @pyqtSlot()
-    def currentItemChanged(self):
-        self.commitData.emit(self.sender())
-
-
-class TableModel(QAbstractTableModel):
-    def __init__(self, data=None, mode="time", undo=None):
-        super(QAbstractTableModel, self).__init__()
-        self._headers = data.header
-        self._data = data
-        self._mode = mode
-        self._undo = undo
-
-    def flags(self, index):
-        options = Qt.ItemIsEnabled | Qt.ItemIsSelectable
-        options |= Qt.ItemIsEditable
-
-        return options
-
-    def rowCount(self, parent):
-        return len(self._data)
-
-    def columnCount(self, parent):
-        return len(self._headers)
 
+class TableModel(PamhyrTableModel):
     def data(self, index, role):
         if role == Qt.TextAlignmentRole:
             return Qt.AlignHCenter | Qt.AlignVCenter
@@ -189,7 +70,7 @@ class TableModel(QAbstractTableModel):
             if self._data.get_type_column(column) == float:
                 value = f"{v:.4f}"
             elif self._data.header[column] == "time":
-                if self._mode == "time":
+                if self._opt_data == "time":
                     t0 = datetime.fromtimestamp(0)
                     t = datetime.fromtimestamp(v)
                     value = str(t - t0)
@@ -200,12 +81,6 @@ class TableModel(QAbstractTableModel):
 
         return value
 
-    def headerData(self, section, orientation, role):
-        if role == Qt.ItemDataRole.DisplayRole and orientation == Qt.Orientation.Horizontal:
-            return table_headers[self._headers[section]]
-
-        return QVariant()
-
     def setData(self, index, value, role=Qt.EditRole):
         if not index.isValid() or role != Qt.EditRole:
             return False
@@ -315,12 +190,3 @@ class TableModel(QAbstractTableModel):
 
         self.layoutAboutToBeChanged.emit()
         self.layoutChanged.emit()
-
-
-    def undo(self):
-        self._undo.undo()
-        self.layoutChanged.emit()
-
-    def redo(self):
-        self._undo.redo()
-        self.layoutChanged.emit()

src/View/BoundaryCondition/Edit/UndoCommand.py

@@ -29,6 +29,7 @@ from Model.BoundaryCondition.BoundaryCondition import BoundaryCondition
 
 logger = logging.getLogger()
 
+
 class SetDataCommand(QUndoCommand):
     def __init__(self, data, index, column, new_value):
         QUndoCommand.__init__(self)
@@ -46,6 +47,7 @@ class SetDataCommand(QUndoCommand):
     def redo(self):
         self._data._set_i_c_v(self._index, self._column, self._new)
 
+
 class SetMetaDataCommand(QUndoCommand):
     def __init__(self, data, column, new_value):
         QUndoCommand.__init__(self)
@@ -89,6 +91,7 @@ class AddCommand(QUndoCommand):
         else:
             self._data.insert(self._index, self._new)
 
+
 class DelCommand(QUndoCommand):
     def __init__(self, data, rows):
         QUndoCommand.__init__(self)
@@ -108,6 +111,7 @@ class DelCommand(QUndoCommand):
     def redo(self):
         self._data.delete_i(self._rows)
 
+
 class SortCommand(QUndoCommand):
     def __init__(self, data, _reverse):
         QUndoCommand.__init__(self)

src/View/BoundaryCondition/Edit/Window.py

@@ -16,10 +16,13 @@
 
 # -*- coding: utf-8 -*-
 
+import logging
+
 from tools import timer, trace
 
-from View.ASubWindow import ASubMainWindow, AWidget
+from View.Tools.PamhyrWindow import PamhyrWindow
-from View.ListedSubWindow import ListedSubWindow
+from View.Tools.PamhyrWidget import PamhyrWidget
+from View.Tools.PamhyrDelegate import PamhyrExTimeDelegate
 
 from PyQt5.QtGui import (
     QKeySequence,
@@ -38,26 +41,29 @@ from PyQt5.QtWidgets import (
     QHeaderView, QDoubleSpinBox, QVBoxLayout,
 )
 
-from View.Plot.MplCanvas import MplCanvas
+from View.Tools.Plot.PamhyrCanvas import MplCanvas
-from View.Plot.navigation_toolbar_2qt import PamHyrNavigationToolbar2QT
+from View.Tools.Plot.PamhyrToolbar import PamhyrPlotToolbar
 
-from View.BoundaryCondition.translate import long_types
+from View.BoundaryCondition.Edit.translate import BCETranslate
 from View.BoundaryCondition.Edit.UndoCommand import SetMetaDataCommand
-from View.BoundaryCondition.Edit.Table import TableModel, ExTimeDelegate
+from View.BoundaryCondition.Edit.Table import TableModel
 from View.BoundaryCondition.Edit.Plot import Plot
 
 _translate = QCoreApplication.translate
 
-class WD50Sigma(AWidget):
+logger = logging.getLogger()
+
+
+class WD50Sigma(PamhyrWidget):
+    _pamhyr_ui = "d50sigma"
+
     d50Changed = pyqtSignal(float)
     sigmaChanged = pyqtSignal(float)
 
     def __init__(self, parent=None):
         super(WD50Sigma, self).__init__(
-            ui="d50sigma",
             parent=parent
         )
-        self.parent = parent
 
         self.spinBox_d50 = self.find(QDoubleSpinBox, "doubleSpinBox_d50")
         self.spinBox_sigma = self.find(QDoubleSpinBox, "doubleSpinBox_sigma")
@@ -89,75 +95,77 @@ class WD50Sigma(AWidget):
     def valueChangedSigma(self, value):
         self.sigmaChanged.emit(value)
 
-class EditBoundaryConditionWindow(ASubMainWindow, ListedSubWindow):
-    def __init__(self, title="Edit boundary condition",
-                 data=None, study=None, parent=None):
-        self._data = data
-        self._study = study
-        self._title = title
 
-        self.compute_title()
+class EditBoundaryConditionWindow(PamhyrWindow):
+    _pamhyr_ui = "EditBoundaryConditions"
+    _pamhyr_name = "Edit Boundary Conditions"
+
+    def __init__(self, data=None, study=None, config=None, parent=None):
+        self._data = data
+        trad = BCETranslate()
+        self._long_types = trad.get_dict("long_types")
+
+        name = self._pamhyr_name
+        if self._data is not None:
+            node_name = (self._data.node.name if self._data.node is not None
+                         else _translate("BoundaryCondition", "Not associate"))
+            name = (
+                _translate("Edit boundary condition", self._pamhyr_name) +
+                f" - {study.name} " +
+                f" - {self._data.name} ({self._data.id}) " +
+                f"({self._long_types[self._data.bctype]} - {node_name})"
+            )
 
         super(EditBoundaryConditionWindow, self).__init__(
-            name=self._title, ui="EditBoundaryConditions", parent=parent
+            title=name,
+            study=study,
+            config=config,
+            trad=trad,
+            parent=parent
         )
 
-        self.ui.setWindowTitle(self._title)
+        self._hash_data.append(data)
 
-        self.setup_sc()
         self.setup_table()
         self.setup_plot()
         self.setup_data()
         self.setup_connections()
 
-    def compute_title(self):
-        if self._data is not None:
-            node_name = (self._data.node.name if self._data.node is not None
-                         else _translate("BoundaryCondition", "Not associate"))
-            self._title = (
-                _translate("Edit boundary condition", self._title) +
-                f" - {self._study.name} " +
-                f" - {self._data.name} ({self._data.id}) " +
-                f"({long_types[self._data.bctype]} - {node_name})"
-            )
-
-    def setup_sc(self):
-        self._undo_stack = QUndoStack()
-
-        self.undo_sc = QShortcut(QKeySequence.Undo, self)
-        self.redo_sc = QShortcut(QKeySequence.Redo, self)
-        self.copy_sc = QShortcut(QKeySequence.Copy, self)
-        self.paste_sc = QShortcut(QKeySequence.Paste, self)
-
     def setup_data(self):
         self._is_solid = self._data.bctype == "SL"
 
         if self._is_solid:
             layout = self.find(QVBoxLayout, "verticalLayout_table")
-            self._d50sigma = WD50Sigma(parent = self)
+            self._d50sigma = WD50Sigma(parent=self)
             layout.addWidget(self._d50sigma)
 
             self._d50sigma.set_d50(self._data.d50)
             self._d50sigma.set_sigma(self._data.sigma)
 
     def setup_table(self):
-        table = self.find(QTableView, "tableView")
+        headers = {}
-        self._table = TableModel(
+        table_headers = self._trad.get_dict("table_headers")
-            data = self._data,
+        for h in self._data.header:
-            undo = self._undo_stack,
+            headers[h] = table_headers[h]
-            mode = self._study.time_system
+
+        self._delegate_time = PamhyrExTimeDelegate(
+            data=self._data,
+            mode=self._study.time_system,
+            parent=self
         )
 
-        if self._data.header[0] == "time":
+        table = self.find(QTableView, "tableView")
-            self._delegate_time = ExTimeDelegate(
+        self._table = TableModel(
-                data = self._data,
+            table_view=table,
-                mode = self._study.time_system,
+            table_headers=headers,
-                parent = self
+            editable_headers=self._data.header,
-            )
+            delegates={
-
+                "time": self._delegate_time,
-            table.setItemDelegateForColumn(
+            },
-                0, self._delegate_time
+            data=self._data,
-            )
+            undo=self._undo_stack,
+            opt_data=self._study.time_system
+        )
 
         table.setModel(self._table)
         table.setSelectionBehavior(QAbstractItemView.SelectRows)
@@ -167,31 +175,26 @@ class EditBoundaryConditionWindow(ASubMainWindow, ListedSubWindow):
     def setup_plot(self):
         self.canvas = MplCanvas(width=5, height=4, dpi=100)
         self.canvas.setObjectName("canvas")
-        self.toolbar = PamHyrNavigationToolbar2QT(
+        self.toolbar = PamhyrPlotToolbar(
             self.canvas, self
         )
         self.verticalLayout.addWidget(self.toolbar)
         self.verticalLayout.addWidget(self.canvas)
 
         self.plot = Plot(
-            canvas = self.canvas,
+            canvas=self.canvas,
-            data = self._data,
+            data=self._data,
-            mode = self._study.time_system,
+            mode=self._study.time_system,
-            toolbar = self.toolbar,
+            trad=self._trad,
+            toolbar=self.toolbar,
         )
         self.plot.draw()
 
-
     def setup_connections(self):
         self.find(QAction, "action_add").triggered.connect(self.add)
         self.find(QAction, "action_del").triggered.connect(self.delete)
         self.find(QAction, "action_sort").triggered.connect(self.sort)
 
-        self.undo_sc.activated.connect(self.undo)
-        self.redo_sc.activated.connect(self.redo)
-        self.copy_sc.activated.connect(self.copy)
-        self.paste_sc.activated.connect(self.paste)
-
         self._table.dataChanged.connect(self.update)
 
         if self._is_solid:
@@ -240,7 +243,6 @@ class EditBoundaryConditionWindow(ASubMainWindow, ListedSubWindow):
             )
         )
 
-
     def add(self):
         rows = self.index_selected_rows()
         if len(self._data) == 0 or len(rows) == 0:
@@ -272,8 +274,7 @@ class EditBoundaryConditionWindow(ASubMainWindow, ListedSubWindow):
         self._table.move_down(row)
         self.plot.update()
 
-
+    def _copy(self):
-    def copy(self):
         rows = self.index_selected_rows()
 
         table = []
@@ -285,7 +286,7 @@ class EditBoundaryConditionWindow(ASubMainWindow, ListedSubWindow):
 
         self.copyTableIntoClipboard(table)
 
-    def paste(self):
+    def _paste(self):
         header, data = self.parseClipboardTable()
 
         if len(data) == 0:
@@ -299,12 +300,12 @@ class EditBoundaryConditionWindow(ASubMainWindow, ListedSubWindow):
         self._table.paste(row, header, data)
         self.plot.update()
 
-    def undo(self):
+    def _undo(self):
         self._table.undo()
         self.plot.update()
         self.widget_update()
 
-    def redo(self):
+    def _redo(self):
         self._table.redo()
         self.plot.update()
         self.widget_update()

src/View/BoundaryCondition/Edit/translate.py

@@ -18,14 +18,23 @@
 
 from PyQt5.QtCore import QCoreApplication
 
+from View.Tools.PamhyrTranslate import PamhyrTranslate
+
+from View.BoundaryCondition.translate import BCTranslate
+
 _translate = QCoreApplication.translate
 
-table_headers = {
+
-    "x": _translate("BoundaryCondition", "X"),
+class BCETranslate(BCTranslate):
-    "y": _translate("BoundaryCondition", "Y"),
+    def __init__(self):
-    "time": _translate("BoundaryCondition", "Time"),
+        super(BCETranslate, self).__init__()
-    "date": _translate("BoundaryCondition", "Date"),
+
-    "discharge": _translate("BoundaryCondition", "Discharge (m³/s)"),
+        self._sub_dict["table_headers"] = {
-    "z": _translate("BoundaryCondition", "Z (m)"),
+            "x": _translate("BoundaryCondition", "X"),
-    "solid": _translate("BoundaryCondition", "Solid (kg/s)"),
+            "y": _translate("BoundaryCondition", "Y"),
-}
+            "time": _translate("BoundaryCondition", "Time"),
+            "date": _translate("BoundaryCondition", "Date"),
+            "discharge": _translate("BoundaryCondition", "Discharge (m³/s)"),
+            "z": _translate("BoundaryCondition", "Z (m)"),
+            "solid": _translate("BoundaryCondition", "Solid (kg/s)"),
+        }

src/View/BoundaryCondition/Table.py

@@ -39,24 +39,33 @@ from Model.BoundaryCondition.BoundaryConditionTypes import (
     TimeOverZ, TimeOverDischarge, ZOverDischarge
 )
 
+from View.Tools.PamhyrTable import PamhyrTableModel
+
 from View.BoundaryCondition.UndoCommand import (
     SetNameCommand, SetNodeCommand, SetTypeCommand,
     AddCommand, DelCommand, SortCommand,
     MoveCommand, PasteCommand, DuplicateCommand,
 )
-from View.BoundaryCondition.translate import *
+from View.BoundaryCondition.translate import BC_types
 
 logger = logging.getLogger()
 
 _translate = QCoreApplication.translate
 
+
 class ComboBoxDelegate(QItemDelegate):
-    def __init__(self, data=None, mode="type", tab="", parent=None):
+    def __init__(self, data=None, mode="type", tab="",
+                 trad=None, parent=None):
         super(ComboBoxDelegate, self).__init__(parent)
 
         self._data = data
         self._mode = mode
         self._tab = tab
+        self._trad = trad
+
+        self._long_types = {}
+        if self._trad is not None:
+            self._long_types = self._trad.get_dict("long_types")
 
     def createEditor(self, parent, option, index):
         self.editor = QComboBox(parent)
@@ -64,7 +73,7 @@ class ComboBoxDelegate(QItemDelegate):
         if self._mode == "type":
             lst = list(
                 map(
-                    lambda k: long_types[k],
+                    lambda k: self._long_types[k],
                     filter(
                         lambda k: self._tab in BC_types[k].compatibility(),
                         BC_types.keys()
@@ -95,8 +104,9 @@ class ComboBoxDelegate(QItemDelegate):
 
     def updateEditorGeometry(self, editor, option, index):
         r = QRect(option.rect)
-        if self.editor.windowFlags() & Qt.Popup and editor.parent() is not None:
+        if self.editor.windowFlags() & Qt.Popup:
-            r.setTopLeft(self.editor.parent().mapToGlobal(r.topLeft()))
+            if editor.parent() is not None:
+                r.setTopLeft(self.editor.parent().mapToGlobal(r.topLeft()))
         editor.setGeometry(r)
 
     @pyqtSlot()
@@ -104,26 +114,20 @@ class ComboBoxDelegate(QItemDelegate):
         self.commitData.emit(self.sender())
 
 
-class TableModel(QAbstractTableModel):
+class TableModel(PamhyrTableModel):
-    def __init__(self, data=None, undo=None, tab=""):
+    def __init__(self, **kwargs):
-        super(QAbstractTableModel, self).__init__()
+        super(TableModel, self).__init__(**kwargs)
-        self._headers = list(table_headers.keys())
-        self._data = data
-        self._undo = undo
-        self._tab = tab
-        self._bcs = self._data.boundary_condition
 
-    def flags(self, index):
+        self._long_types = {}
-        options = Qt.ItemIsEnabled | Qt.ItemIsSelectable
+        if self._trad is not None:
-        options |= Qt.ItemIsEditable
+            self._long_types = self._trad.get_dict("long_types")
 
-        return options
+    def _setup_lst(self):
+        self._lst = self._data.boundary_condition
+        self._tab = self._opt_data
 
     def rowCount(self, parent):
-        return self._bcs.len(self._tab)
+        return self._lst.len(self._tab)
-
-    def columnCount(self, parent):
-        return len(self._headers)
 
     def data(self, index, role):
         if role != Qt.ItemDataRole.DisplayRole:
@@ -133,24 +137,18 @@ class TableModel(QAbstractTableModel):
         column = index.column()
 
         if self._headers[column] == "name":
-            return self._bcs.get(self._tab, row).name
+            return self._lst.get(self._tab, row).name
         elif self._headers[column] == "type":
-            t = self._bcs.get(self._tab, row).bctype
+            t = self._lst.get(self._tab, row).bctype
-            return long_types[t]
+            return self._long_types[t]
         elif self._headers[column] == "node":
-            n = self._bcs.get(self._tab, row).node
+            n = self._lst.get(self._tab, row).node
             if n is None:
                 return _translate("BoundaryCondition", "Not associate")
             return n.name
 
         return QVariant()
 
-    def headerData(self, section, orientation, role):
-        if role == Qt.ItemDataRole.DisplayRole and orientation == Qt.Orientation.Horizontal:
-            return table_headers[self._headers[section]]
-
-        return QVariant()
-
     def setData(self, index, value, role=Qt.EditRole):
         if not index.isValid() or role != Qt.EditRole:
             return False
@@ -162,20 +160,21 @@ class TableModel(QAbstractTableModel):
             if self._headers[column] == "name":
                 self._undo.push(
                     SetNameCommand(
-                        self._bcs, self._tab,row, value
+                        self._lst, self._tab, row, value
                     )
                 )
             elif self._headers[column] == "type":
-                key = next(k for k, v in long_types.items() if v == value)
+                key = next(k for k, v in self._long_types.items()
+                           if v == value)
                 self._undo.push(
                     SetTypeCommand(
-                        self._bcs, self._tab,row, BC_types[key]
+                        self._lst, self._tab, row, BC_types[key]
                     )
                 )
             elif self._headers[column] == "node":
                 self._undo.push(
                     SetNodeCommand(
-                        self._bcs, self._tab,row, self._data.node(value)
+                        self._lst, self._tab, row, self._data.node(value)
                     )
                 )
         except Exception as e:
@@ -190,7 +189,7 @@ class TableModel(QAbstractTableModel):
 
         self._undo.push(
             AddCommand(
-                self._bcs, self._tab,row
+                self._lst, self._tab, row
             )
         )
 
@@ -202,7 +201,7 @@ class TableModel(QAbstractTableModel):
 
         self._undo.push(
             DelCommand(
-                self._bcs, self._tab,rows
+                self._lst, self._tab, rows
             )
         )
 
@@ -214,7 +213,7 @@ class TableModel(QAbstractTableModel):
 
         self._undo.push(
             SortCommand(
-                self._bcs, self._tab,False
+                self._lst, self._tab, False
             )
         )
 
@@ -231,7 +230,7 @@ class TableModel(QAbstractTableModel):
 
         self._undo_stack.push(
             MoveCommand(
-                self._bcs, self._tab,"up", row
+                self._lst, self._tab, "up", row
             )
         )
 
@@ -239,7 +238,7 @@ class TableModel(QAbstractTableModel):
         self.layoutChanged.emit()
 
     def move_down(self, index, parent=QModelIndex()):
-        if row > len(self._bcs):
+        if row > len(self._lst):
             return
 
         target = row
@@ -248,7 +247,7 @@ class TableModel(QAbstractTableModel):
 
         self._undo_stack.push(
             MoveCommand(
-                self._bcs, self._tab,"down", row
+                self._lst, self._tab, "down", row
             )
         )
 

src/View/BoundaryCondition/UndoCommand.py

@@ -26,6 +26,7 @@ from PyQt5.QtWidgets import (
 from Model.BoundaryCondition.BoundaryCondition import BoundaryCondition
 from Model.BoundaryCondition.BoundaryConditionList import BoundaryConditionList
 
+
 class SetNameCommand(QUndoCommand):
     def __init__(self, bcs, tab, index, new_value):
         QUndoCommand.__init__(self)
@@ -42,6 +43,7 @@ class SetNameCommand(QUndoCommand):
     def redo(self):
         self._bcs.get(self._tab, self._index).name = self._new
 
+
 class SetNodeCommand(QUndoCommand):
     def __init__(self, bcs, tab, index, node):
         QUndoCommand.__init__(self)
@@ -58,6 +60,7 @@ class SetNodeCommand(QUndoCommand):
     def redo(self):
         self._bcs.get(self._tab, self._index).node = self._new
 
+
 class SetTypeCommand(QUndoCommand):
     def __init__(self, bcs, tab, index, _type):
         QUndoCommand.__init__(self)
@@ -76,6 +79,7 @@ class SetTypeCommand(QUndoCommand):
     def redo(self):
         self._bcs.set(self._tab, self._index, self._new)
 
+
 class AddCommand(QUndoCommand):
     def __init__(self, bcs, tab, index):
         QUndoCommand.__init__(self)
@@ -94,6 +98,7 @@ class AddCommand(QUndoCommand):
         else:
             self._bcs.insert(self._tab, self._index, self._new)
 
+
 class DelCommand(QUndoCommand):
     def __init__(self, bcs, tab, rows):
         QUndoCommand.__init__(self)
@@ -114,6 +119,7 @@ class DelCommand(QUndoCommand):
     def redo(self):
         self._bcs.delete_i(self._tab, self._rows)
 
+
 class SortCommand(QUndoCommand):
     def __init__(self, bcs, tab, _reverse):
         QUndoCommand.__init__(self)

src/View/BoundaryCondition/Window.py

@@ -20,8 +20,7 @@ import logging
 
 from tools import trace, timer
 
-from View.ASubWindow import ASubMainWindow
+from View.Tools.PamhyrWindow import PamhyrWindow
-from View.ListedSubWindow import ListedSubWindow
 
 from PyQt5.QtGui import (
     QKeySequence,
@@ -56,71 +55,71 @@ from View.BoundaryCondition.Table import (
 )
 
 from View.Network.GraphWidget import GraphWidget
-from View.BoundaryCondition.translate import *
+from View.BoundaryCondition.translate import BCTranslate
 from View.BoundaryCondition.Edit.Window import EditBoundaryConditionWindow
 
 _translate = QCoreApplication.translate
 
 logger = logging.getLogger()
 
-class BoundaryConditionWindow(ASubMainWindow, ListedSubWindow):
+
-    def __init__(self, title="Boundary conditions", study=None, parent=None):
+class BoundaryConditionWindow(PamhyrWindow):
-        self._title = title + " - " + study.name
+    _pamhyr_ui = "BoundaryConditions"
+    _pamhyr_name = "Boundary conditions"
+
+    def __init__(self, study=None, config=None, parent=None):
+        name = self._pamhyr_name + " - " + study.name
 
         super(BoundaryConditionWindow, self).__init__(
-            name=title, ui="BoundaryConditions", parent=parent
+            title=name,
+            study=study,
+            config=config,
+            trad=BCTranslate(),
+            parent=parent
         )
 
-        self._study = study
         self._bcs = self._study.river.boundary_condition
 
-        self.setup_sc()
         self.setup_table()
         self.setup_graph()
         self.setup_connections()
 
         self.ui.setWindowTitle(self._title)
 
-    def setup_sc(self):
-        self._undo_stack = QUndoStack()
-
-        self.undo_sc = QShortcut(QKeySequence.Undo, self)
-        self.redo_sc = QShortcut(QKeySequence.Redo, self)
-        self.copy_sc = QShortcut(QKeySequence.Copy, self)
-        self.paste_sc = QShortcut(QKeySequence.Paste, self)
-
     def setup_table(self):
         self._table = {}
 
         for t in ["liquid", "solid", "suspenssion"]:
-            table = self.find(QTableView, f"tableView_{t}")
-            self._table[t] = TableModel(
-                data = self._study.river,
-                undo = self._undo_stack,
-                tab = t,
-            )
-            table.setModel(self._table[t])
-
             self._delegate_type = ComboBoxDelegate(
-                data = self._study.river,
+                trad=self._trad,
-                mode = "type",
+                data=self._study.river,
-                tab = t,
+                mode="type",
+                tab=t,
                 parent=self
             )
             self._delegate_node = ComboBoxDelegate(
-                data = self._study.river,
+                trad=self._trad,
-                mode = "node",
+                data=self._study.river,
-                tab = t,
+                mode="node",
+                tab=t,
                 parent=self
             )
 
-            table.setItemDelegateForColumn(
+            table = self.find(QTableView, f"tableView_{t}")
-                1, self._delegate_type
+            self._table[t] = TableModel(
+                table_view=table,
+                table_headers=self._trad.get_dict("table_headers"),
+                editable_headers=["name", "type", "node"],
+                delegates={
+                    "type": self._delegate_type,
+                    "node": self._delegate_node,
+                },
+                trad=self._trad,
+                data=self._study.river,
+                undo=self._undo_stack,
+                opt_data=t,
             )
-            table.setItemDelegateForColumn(
+            table.setModel(self._table[t])
-                2, self._delegate_node
-            )
-
             table.setSelectionBehavior(QAbstractItemView.SelectRows)
             table.horizontalHeader().setSectionResizeMode(QHeaderView.Stretch)
             table.setAlternatingRowColors(True)
@@ -128,7 +127,7 @@ class BoundaryConditionWindow(ASubMainWindow, ListedSubWindow):
     def setup_graph(self):
         self.graph_widget = GraphWidget(
             self._study.river,
-            min_size=None, size=(200,200),
+            min_size=None, size=(200, 200),
             only_display=True,
             parent=self
         )
@@ -141,11 +140,6 @@ class BoundaryConditionWindow(ASubMainWindow, ListedSubWindow):
         self.find(QAction, "action_edit").triggered.connect(self.edit)
         self.find(QAction, "action_sort").triggered.connect(self.sort)
 
-        self.undo_sc.activated.connect(self.undo)
-        self.redo_sc.activated.connect(self.redo)
-        self.copy_sc.activated.connect(self.copy)
-        self.paste_sc.activated.connect(self.paste)
-
     def current_tab(self):
         return self.find(QTabWidget, "tabWidget")\
                    .currentWidget()\
@@ -202,17 +196,17 @@ class BoundaryConditionWindow(ASubMainWindow, ListedSubWindow):
         row = self.index_selected_row()
         self._table[tab].move_down(row)
 
-    def copy(self):
+    def _copy(self):
         logger.info("TODO: copy")
 
-    def paste(self):
+    def _paste(self):
         logger.info("TODO: paste")
 
-    def undo(self):
+    def _undo(self):
         tab = self.current_tab()
         self._table[tab].undo()
 
-    def redo(self):
+    def _redo(self):
         tab = self.current_tab()
         self._table[tab].redo()
 
@@ -220,17 +214,17 @@ class BoundaryConditionWindow(ASubMainWindow, ListedSubWindow):
         tab = self.current_tab()
         rows = self.index_selected_rows()
         for row in rows:
-            win = self.sub_win_filter_first(
+            data = self._bcs.get(tab, row)
-                "Edit boundary condition",
-                contain = [f"({self._bcs.get(tab, row).id})"]
-            )
 
-            if win is None:
+            if self.sub_window_exists(
-                win = EditBoundaryConditionWindow(
+                EditBoundaryConditionWindow,
-                    data=self._bcs.get(tab, row),
+                data=[self._study, None, data]
-                    study=self._study,
+            ):
-                    parent=self
+                continue
-                )
+
-                win.show()
+            win = EditBoundaryConditionWindow(
-            else:
+                data=data,
-                win.activateWindow()
+                study=self._study,
+                parent=self
+            )
+            win.show()

src/View/BoundaryCondition/translate.py

@@ -18,6 +18,8 @@
 
 from PyQt5.QtCore import QCoreApplication
 
+from View.Tools.PamhyrTranslate import PamhyrTranslate
+
 from Model.BoundaryCondition.BoundaryConditionTypes import (
     NotDefined, PonctualContribution,
     TimeOverZ, TimeOverDischarge, ZOverDischarge,
@@ -26,21 +28,6 @@ from Model.BoundaryCondition.BoundaryConditionTypes import (
 
 _translate = QCoreApplication.translate
 
-long_types = {
-    "ND": _translate("BoundaryCondition", "Not defined"),
-    "PC": _translate("BoundaryCondition", "Ponctual contribution"),
-    "TZ": _translate("BoundaryCondition", "TimeZ"),
-    "TD": _translate("BoundaryCondition", "TimeDischarge"),
-    "ZD": _translate("BoundaryCondition", "ZDischarge"),
-    "SL": _translate("BoundaryCondition", "Solid"),
-}
-
-table_headers = {
-    "name": _translate("BoundaryCondition", "Name"),
-    "type": _translate("BoundaryCondition", "Type"),
-    "node": _translate("BoundaryCondition", "Node")
-}
-
 BC_types = {
     "ND": NotDefined,
     "PC": PonctualContribution,
@@ -49,3 +36,23 @@ BC_types = {
     "ZD": ZOverDischarge,
     "SL": Solid,
 }
+
+
+class BCTranslate(PamhyrTranslate):
+    def __init__(self):
+        super(BCTranslate, self).__init__()
+
+        self._sub_dict["long_types"] = {
+            "ND": _translate("BoundaryCondition", "Not defined"),
+            "PC": _translate("BoundaryCondition", "Ponctual contribution"),
+            "TZ": _translate("BoundaryCondition", "TimeZ"),
+            "TD": _translate("BoundaryCondition", "TimeDischarge"),
+            "ZD": _translate("BoundaryCondition", "ZDischarge"),
+            "SL": _translate("BoundaryCondition", "Solid"),
+        }
+
+        self._sub_dict["table_headers"] = {
+            "name": _translate("BoundaryCondition", "Name"),
+            "type": _translate("BoundaryCondition", "Type"),
+            "node": _translate("BoundaryCondition", "Node")
+        }

src/View/CheckList/Table.py

@@ -35,25 +35,12 @@ from PyQt5.QtWidgets import (
     QComboBox,
 )
 
+from View.Tools.PamhyrTable import PamhyrTableModel
+
 _translate = QCoreApplication.translate
 
 
-class TableModel(QAbstractTableModel):
+class TableModel(PamhyrTableModel):
-    def __init__(self, data=None):
-        super(QAbstractTableModel, self).__init__()
-        self._headers = ["name", "status"]
-        self._data = data
-
-    def flags(self, index):
-        options = Qt.ItemIsEnabled | Qt.ItemIsSelectable
-        return options
-
-    def rowCount(self, parent):
-        return len(self._data)
-
-    def columnCount(self, parent):
-        return len(self._headers)
-
     def data(self, index, role):
         row = index.row()
         column = index.column()
@@ -81,12 +68,3 @@ class TableModel(QAbstractTableModel):
             return self._data[row].summary
 
         return QVariant()
-
-    def headerData(self, section, orientation, role):
-        if role == Qt.ItemDataRole.DisplayRole and orientation == Qt.Orientation.Horizontal:
-            return self._headers[section]
-
-        return QVariant()
-
-    def update(self):
-        self.layoutChanged.emit()

src/View/CheckList/Translate.py

@@ -0,0 +1,33 @@
+# Translate.py -- Pamhyr
+# Copyright (C) 2023  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-
+
+from PyQt5.QtCore import QCoreApplication
+
+from View.Tools.PamhyrTranslate import PamhyrTranslate
+
+_translate = QCoreApplication.translate
+
+
+class CheckListTranslate(PamhyrTranslate):
+    def __init__(self):
+        super(CheckListTranslate, self).__init__()
+
+        self._sub_dict["table_headers"] = {
+            "name": _translate("CheckList", "Name"),
+            "status": _translate("CheckList", "Status"),
+        }

src/View/CheckList/Window.py

@@ -18,8 +18,7 @@
 
 from tools import trace, timer
 
-from View.ASubWindow import ASubMainWindow
+from View.Tools.PamhyrWindow import PamhyrWindow
-from View.ListedSubWindow import ListedSubWindow
 
 from PyQt5.QtGui import (
     QKeySequence,
@@ -41,33 +40,40 @@ from PyQt5.QtWidgets import (
 
 from View.CheckList.Table import TableModel
 from View.CheckList.Worker import Worker
+from View.CheckList.Translate import CheckListTranslate
 
 _translate = QCoreApplication.translate
 
-class CheckListWindow(ASubMainWindow, ListedSubWindow):
+
+class CheckListWindow(PamhyrWindow):
+    _pamhyr_ui = "CheckList"
+    _pamhyr_name = "Check list"
 
     signalStatus = pyqtSignal(str)
 
-    def __init__(self, title="Check list",
+    def __init__(self, autorun: bool = True,
-                 autorun:bool=True,
                  study=None, config=None,
                  solver=None, parent=None):
-        self._title = title + " - " + study.name
-
         self._autorun = autorun
-
-        self._study = study
-        self._config = config
         self._solver = solver
-        self._parent = parent
+
+        name = self._pamhyr_name + " - " + study.name
 
         super(CheckListWindow, self).__init__(
-            name=self._title, ui="CheckList", parent=parent
+            title=name,
+            study=study,
+            config=config,
+            trad=CheckListTranslate(),
+            options=[],
+            parent=parent
         )
-        self.ui.setWindowTitle(self._title)
+
+        # Add solver to hash computation data
+        self._hash_data.append(self._solver)
 
         self._checker_list = (
-            self._study.checkers() + self._solver.checkers()
+            self._study.checkers() +
+            self._solver.checkers()
         )
 
         self.setup_table()
@@ -78,16 +84,12 @@ class CheckListWindow(ASubMainWindow, ListedSubWindow):
 
     def setup_table(self):
         table = self.find(QTableView, f"tableView")
-
         self._table = TableModel(
-            data = self._checker_list,
+            table_view=table,
+            table_headers=self._trad.get_dict("table_headers"),
+            data=self._checker_list,
         )
 
-        table.setModel(self._table)
-        table.setSelectionBehavior(QAbstractItemView.SelectRows)
-        table.horizontalHeader().setSectionResizeMode(QHeaderView.Stretch)
-        table.setAlternatingRowColors(True)
-
     def setup_progress_bar(self):
         self._progress = self.find(QProgressBar, f"progressBar")
         self._p = 0             # Progress current step
@@ -98,7 +100,8 @@ class CheckListWindow(ASubMainWindow, ListedSubWindow):
     def setup_connections(self):
         self.find(QPushButton, "pushButton_ok").clicked.connect(self.accept)
         self.find(QPushButton, "pushButton_retry").clicked.connect(self.retry)
-        self.find(QPushButton, "pushButton_cancel").clicked.connect(self.reject)
+        self.find(QPushButton, "pushButton_cancel")\
+            .clicked.connect(self.reject)
 
     def setup_thread(self):
         self._worker = Worker(self._study, self._checker_list)
@@ -122,7 +125,8 @@ class CheckListWindow(ASubMainWindow, ListedSubWindow):
 
     def _compute_status(self):
         ok = len(list(filter(lambda c: c.is_ok(), self._checker_list)))
-        warning = len(list(filter(lambda c: c.is_warning(), self._checker_list)))
+        warning = len(
+            list(filter(lambda c: c.is_warning(), self._checker_list)))
         error = len(list(filter(lambda c: c.is_error(), self._checker_list)))
 
         return ok, warning, error
@@ -166,7 +170,7 @@ class CheckListWindow(ASubMainWindow, ListedSubWindow):
 
         self.update_statusbar()
 
-    def update(self, key:str):
+    def update(self, key: str):
         if key == "start":
             self.start_compute()
             self.info_compute("Starting ...")
@@ -189,4 +193,4 @@ class CheckListWindow(ASubMainWindow, ListedSubWindow):
 
     def accept(self):
         self._parent.solver_log(self._solver)
-        #self.end()
+        # self.end()

src/View/CheckList/Worker.py

@@ -22,6 +22,7 @@ from PyQt5.QtCore import (
     Qt, QObject, pyqtSlot, pyqtSignal
 )
 
+
 class Worker(QObject):
     signalStatus = pyqtSignal(str)
 
@@ -37,10 +38,11 @@ class Worker(QObject):
         self.signalStatus.emit('end')
 
     def _compute(self):
+        # The computation loop
         for checker in self._checker_list:
             self.signalStatus.emit(checker.name)
 
-            # time.sleep(1)
+            # Run checker
-            checker.run(self._study)
+            checker._run(self._study)
 
             self.signalStatus.emit("progress")

src/View/Configure/Solver/Window.py

@@ -16,7 +16,7 @@
 
 # -*- coding: utf-8 -*-
 
-from View.ASubWindow import ASubWindow
+from View.Tools.PamhyrWindow import PamhyrDialog
 from Solver.Solvers import solver_type_list
 from Solver.GenericSolver import GenericSolver
 
@@ -24,12 +24,23 @@ from PyQt5.QtWidgets import (
     QPushButton,
 )
 
-class ConfigureSolverWindow(ASubWindow):
+
-    def __init__(self, data=None, title="Configuration : Add Solver", parent=None):
+class ConfigureSolverWindow(PamhyrDialog):
+    _pamhyr_ui = "ConfigureAddSolverDialog"
+    _pamhyr_name = "Add/Edit Solver"
+
+    def __init__(self, data=None, config=None, parent=None):
+        if data is not None:
+            name = f"Edit Solver - {data.name}"
+        else:
+            name = "Add a new Solver"
+
         super(ConfigureSolverWindow, self).__init__(
-            name=title, ui="ConfigureAddSolverDialog", parent=parent
+            title=name,
+            config=config,
+            options=[],
+            parent=parent
         )
-        self.ui.setWindowTitle(title)
 
         # Combo box item
         for solver in solver_type_list:
@@ -37,10 +48,10 @@ class ConfigureSolverWindow(ASubWindow):
 
         # Data to return
         self.data = data
-        if not self.data is None:
+        if self.data is not None:
             self.copy_data()
 
-        self.connect()
+        self.setup_connection()
 
     def copy_data(self):
         self.set_combobox_text("comboBox_solver", self.data.type)
@@ -53,20 +64,23 @@ class ConfigureSolverWindow(ASubWindow):
         self.set_line_edit_text("lineEdit_output", self.data._path_output)
         self.set_line_edit_text("lineEdit_output_cmd", self.data._cmd_output)
 
-    def connect(self):
+    def setup_connection(self):
         # File button
         buttons = {
             "pushButton_input": (lambda: self.file_dialog(
-                select_file = True,
+                select_file=True,
-                callback = lambda f: self.set_line_edit_text("lineEdit_input", f[0])
+                callback=lambda f: self.set_line_edit_text(
+                    "lineEdit_input", f[0])
             )),
             "pushButton_solver": (lambda: self.file_dialog(
-                select_file = True,
+                select_file=True,
-                callback = lambda f: self.set_line_edit_text("lineEdit_solver", f[0])
+                callback=lambda f: self.set_line_edit_text(
+                    "lineEdit_solver", f[0])
             )),
             "pushButton_output": (lambda: self.file_dialog(
-                select_file = True,
+                select_file=True,
-                callback = lambda f: self.set_line_edit_text("lineEdit_output", f[0])
+                callback=lambda f: self.set_line_edit_text(
+                    "lineEdit_output", f[0])
             )),
         }
 
@@ -82,9 +96,11 @@ class ConfigureSolverWindow(ASubWindow):
         else:
             # Build new solver from selected type
             stype = self.get_combobox_text("comboBox_solver")
-            self.data = solver_type_list[stype](self.get_line_edit_text("lineEdit_name"))
+            self.data = solver_type_list[stype](
+                self.get_line_edit_text("lineEdit_name"))
 
-            self.data.description = self.get_line_edit_text("lineEdit_description")
+            self.data.description = self.get_line_edit_text(
+                "lineEdit_description")
             self.data.set_input(
                 self.get_line_edit_text("lineEdit_input"),
                 self.get_line_edit_text("lineEdit_input_cmd")

src/View/Configure/Translate.py

@@ -0,0 +1,34 @@
+# Translate.py -- Pamhyr
+# Copyright (C) 2023  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-
+
+from PyQt5.QtCore import QCoreApplication
+
+from View.Tools.PamhyrTranslate import PamhyrTranslate
+
+_translate = QCoreApplication.translate
+
+
+class ConfigureTranslate(PamhyrTranslate):
+    def __init__(self):
+        super(ConfigureTranslate, self).__init__()
+
+        self._sub_dict["table_headers"] = {
+            "name": _translate("Configure", "Name"),
+            "type": _translate("Configure", "Type"),
+            "description": _translate("Configure", "Description"),
+        }

src/View/Configure/Window.py

@@ -21,13 +21,14 @@ import logging
 from copy import deepcopy
 
 from config import Config
-from View.ASubWindow import ASubWindow
+from View.Tools.PamhyrWindow import PamhyrDialog
-from View.ListedSubWindow import ListedSubWindow
+from View.Tools.PamhyrTable import PamhyrTableModel
 
 from View.Stricklers.Table import TableModel
-from View.Stricklers.translate import *
+from View.Stricklers.translate import StricklersTranslate
 from View.Stricklers.UndoCommand import *
 
+from View.Configure.Translate import ConfigureTranslate
 from View.Configure.Solver.Window import ConfigureSolverWindow
 
 from PyQt5.QtGui import (
@@ -48,126 +49,109 @@ from Solver.Solvers import solver_long_name
 
 logger = logging.getLogger()
 
-class SolverTableModel(QAbstractTableModel):
-    def __init__(self, headers=[], rows=[]):
-        super(QAbstractTableModel, self).__init__()
-        self.rows = rows
-        self.headers = headers
-
-    def rowCount(self, parent):
-        return len(self.rows)
-
-    def columnCount(self, parent):
-        return len(self.headers)
 
+class SolverTableModel(PamhyrTableModel):
     def data(self, index, role):
         if role != Qt.ItemDataRole.DisplayRole:
             return QVariant()
 
-        ret = self.rows[index.row()][self.headers[index.column()]]
+        ret = self._data[index.row()][self._headers[index.column()]]
 
-        if self.headers[index.column()] == "type":
+        if self._headers[index.column()] == "type":
             ret = solver_long_name[ret]
 
         return ret
 
-    def headerData(self, section, orientation, role):
-        if (role == Qt.ItemDataRole.DisplayRole and
-            orientation == Qt.Orientation.Horizontal):
-            return self.headers[section].capitalize()
-
-        if (role == Qt.ItemDataRole.DisplayRole and
-            orientation == Qt.Orientation.Vertical):
-            return section + 1 # Start at 1
-
-        return QVariant()
-
     def removeRow(self, index):
-        del self.rows[index.row()]
+        del self._data[index.row()]
         self.layoutChanged.emit()
 
     def add_solver(self, solver):
-        self.rows.append(solver)
+        self._data.append(solver)
         self.layoutChanged.emit()
 
     def change_solver(self, solver, index):
-        self.rows[index.row()] = solver
+        self._data[index.row()] = solver
         self.layoutChanged.emit()
 
 
-class ConfigureWindow(ASubWindow, ListedSubWindow):
+class ConfigureWindow(PamhyrDialog):
-    def __init__(self, conf=None, title="Configure", parent=None):
+    _pamhyr_ui = "ConfigureDialog"
+    _pamhyr_name = "Configure"
+
+    def __init__(self, config=None, parent=None):
+        if config is None:
+            config = Config()
+
         super(ConfigureWindow, self).__init__(
-            name=title, ui="ConfigureDialog", parent=parent
+            title=self._pamhyr_name,
+            config=config,
+            trad=ConfigureTranslate(),
+            options=[],
+            parent=parent
         )
-        self.ui.setWindowTitle(title)
 
-        if conf is None:
+        self._trad_stricklers = StricklersTranslate()
-            self.conf = Config()
-        else:
-            self.conf = conf
 
-        self.setup_sc()
+        self.setup_custom_sc()
+        self.setup_solver()
+        self.setup_stricklers()
+        self.setup_data()
+        self.setup_connection()
 
-        # Solver
+    def setup_solver(self):
         table = self.find(QTableView, "tableView_solver")
         self.solver_table_model = SolverTableModel(
-            headers = ["name", "type", "description"],
+            table_view=table,
-            rows = conf.solvers
+            table_headers=self._trad.get_dict("table_headers"),
+            data=self._config.solvers
         )
-        table.setModel(self.solver_table_model)
-        table.setSelectionBehavior(QAbstractItemView.SelectRows)
-        table.horizontalHeader().setSectionResizeMode(QHeaderView.Stretch)
-        table.setAlternatingRowColors(True)
 
+    def setup_stricklers(self):
+        table = self.find(QTableView, f"tableView_stricklers")
+        self._stricklers = deepcopy(self._config.stricklers)
+        self._stricklers_table = TableModel(
+            table_view=table,
+            table_headers=self._trad_stricklers.get_dict("table_headers"),
+            editable_headers=["name", "comment", "minor", "medium"],
+            data=self._stricklers,
+            undo=self._undo_stack,
+        )
+
+    def setup_data(self):
         # Meshing_Tool
-        self.set_line_edit_text("lineEdit_meshing_tool", self.conf.meshing_tool)
+        self.set_line_edit_text("lineEdit_meshing_tool",
+                                self._config.meshing_tool)
 
         # Const
-        self.set_line_edit_text("lineEdit_segment", str(self.conf.segment))
+        self.set_line_edit_text("lineEdit_segment", str(self._config.segment))
-        self.set_line_edit_text("lineEdit_max_listing", str(self.conf.max_listing))
+        self.set_line_edit_text("lineEdit_max_listing",
+                                str(self._config.max_listing))
 
         # Backup
-        self.set_check_box("checkBox_backup", self.conf.backup_enable)
+        self.set_check_box("checkBox_backup", self._config.backup_enable)
-        self.set_line_edit_text("lineEdit_backup_path", self.conf.backup_path)
+        self.set_line_edit_text("lineEdit_backup_path",
-        self.set_time_edit("timeEdit_backup_frequence", self.conf.backup_frequence)
+                                self._config.backup_path)
-        self.set_spin_box("spinBox_backup_max", self.conf.backup_max)
+        self.set_time_edit("timeEdit_backup_frequence",
-
+                           self._config.backup_frequence)
-        self.find(QTableView, "tableView_solver").resizeColumnsToContents()
+        self.set_spin_box("spinBox_backup_max", self._config.backup_max)
-        self.connect()
-
-        # Stricklers
-        table = self.find(QTableView, f"tableView_stricklers")
-        self._stricklers = deepcopy(self.conf.stricklers)
-        self._stricklers_table = TableModel(
-            data = self._stricklers,
-            undo = self._undo_stack,
-        )
-        table.setModel(self._stricklers_table)
-        table.setSelectionBehavior(QAbstractItemView.SelectRows)
-        table.horizontalHeader().setSectionResizeMode(QHeaderView.Stretch)
-        table.setAlternatingRowColors(True)
 
         # Editor
-        self.set_line_edit_text("lineEdit_editor_cmd", str(self.conf.editor))
+        self.set_line_edit_text("lineEdit_editor_cmd",
+                                str(self._config.editor))
 
         # Language
         languages = Config.languages()
         for lang in languages:
             self.combobox_add_item("comboBox_language", lang)
-            if self.conf.lang == languages[lang]:
+            if self._config.lang == languages[lang]:
                 self.set_combobox_text("comboBox_language", lang)
 
-    def setup_sc(self):
+    def setup_custom_sc(self):
-        self._undo_stack = QUndoStack()
+        self._debug_sc = QShortcut(QKeySequence("Ctrl+G"), self)
+        self._debug_sc.activated.connect(self.set_debug)
 
-        self.debug_sc = QShortcut(QKeySequence("Ctrl+G"), self)
+    def setup_connection(self):
-        self.undo_sc = QShortcut(QKeySequence.Undo, self)
-        self.redo_sc = QShortcut(QKeySequence.Redo, self)
-        self.copy_sc = QShortcut(QKeySequence.Copy, self)
-        self.paste_sc = QShortcut(QKeySequence.Paste, self)
-
-    def connect(self):
         buttons = {
             # Solvers
             "pushButton_solver_add": self.add_solver,
@@ -179,14 +163,14 @@ class ConfigureWindow(ASubWindow, ListedSubWindow):
             "pushButton_stricklers_sort": self.sort_stricklers,
             # Others
             "pushButton_backup_path": lambda: self.file_dialog(
-                select_file = False,
+                select_file=False,
-                callback = lambda f: self.set_line_edit_text(
+                callback=lambda f: self.set_line_edit_text(
                     "lineEdit_backup_path", f[0]
                 )
             ),
-            "pushButton_meshing_tool" : lambda: self.file_dialog(
+            "pushButton_meshing_tool": lambda: self.file_dialog(
-                select_file = True,
+                select_file=True,
-                callback = lambda f: self.set_line_edit_text(
+                callback=lambda f: self.set_line_edit_text(
                     "lineEdit_meshing_tool", f[0]
                 )
             ),
@@ -195,33 +179,36 @@ class ConfigureWindow(ASubWindow, ListedSubWindow):
         for button in buttons:
             self.find(QPushButton, button).clicked.connect(buttons[button])
 
-        self.debug_sc.activated.connect(self.set_debug)
-
     def accept(self):
         # Solvers
-        self.conf.solvers = self.solver_table_model.rows.copy()
+        self._config.solvers = self.solver_table_model._data.copy()
 
         # Meshing_Tool
-        self.conf.meshing_tool = self.get_line_edit_text("lineEdit_meshing_tool")
+        self._config.meshing_tool = self.get_line_edit_text(
+            "lineEdit_meshing_tool")
 
         # Const
-        self.conf.segment = self.get_line_edit_text("lineEdit_segment")
+        self._config.segment = self.get_line_edit_text("lineEdit_segment")
-        self.conf.max_listing = self.get_line_edit_text("lineEdit_max_listing")
+        self._config.max_listing = self.get_line_edit_text(
+            "lineEdit_max_listing")
 
         # Backup
-        self.conf.backup_enable = self.get_check_box("checkBox_backup")
+        self._config.backup_enable = self.get_check_box("checkBox_backup")
-        self.conf.backup_path = self.get_line_edit_text("lineEdit_backup_path")
+        self._config.backup_path = self.get_line_edit_text(
-        self.conf.backup_frequence = self.get_time_edit("timeEdit_backup_frequence")
+            "lineEdit_backup_path")
-        self.conf.backup_max = self.get_spin_box("spinBox_backup_max")
+        self._config.backup_frequence = self.get_time_edit(
+            "timeEdit_backup_frequence")
+        self._config.backup_max = self.get_spin_box("spinBox_backup_max")
 
         # Stricklers
-        self.conf.stricklers = deepcopy(self._stricklers)
+        self._config.stricklers = deepcopy(self._stricklers)
 
         # Editor
-        self.conf.editor = self.get_line_edit_text("lineEdit_editor_cmd")
+        self._config.editor = self.get_line_edit_text("lineEdit_editor_cmd")
 
         # Language
-        self.conf.lang = Config.languages()[self.get_combobox_text("comboBox_language")]
+        self._config.lang = Config.languages(
+        )[self.get_combobox_text("comboBox_language")]
 
         self.end()
 
@@ -230,26 +217,30 @@ class ConfigureWindow(ASubWindow, ListedSubWindow):
         self.end()
 
     def end(self):
-        self.conf.save()
+        self._config.save()
         self.close()
 
     # Debug
+
     def set_debug(self):
-        self.conf.debug = not self.conf.debug
+        self._config.debug = not self._config.debug
-        logger.info(f"Debug mode set : {self.conf.debug}")
+        logger.info(f"Debug mode set : {self._config.debug}")
         self.parent.setup_debug_mode()
 
     # Solvers
 
     def edit_solver(self):
-        indexes = self.find(QTableView, "tableView_solver").selectionModel().selectedRows()
+        indexes = self.find(
+            QTableView, "tableView_solver").selectionModel().selectedRows()
         for index in indexes:
             self.edit_solver = ConfigureSolverWindow(
-                data=self.solver_table_model.rows[index.row()],
+                data=self.solver_table_model._data[index.row()],
+                config=self._config,
                 parent=self
             )
             if self.edit_solver.exec_():
-                self.solver_table_model.change_solver(self.edit_solver.data, index)
+                self.solver_table_model.change_solver(
+                    self.edit_solver.data, index)
 
     def add_solver(self):
         dialog_solver = ConfigureSolverWindow(parent=self)
@@ -257,7 +248,8 @@ class ConfigureWindow(ASubWindow, ListedSubWindow):
             self.solver_table_model.add_solver(dialog_solver.data)
 
     def remove_solver(self):
-        indices = self.find(QTableView, "tableView_solver").selectionModel().selectedRows()
+        indices = self.find(
+            QTableView, "tableView_solver").selectionModel().selectedRows()
         for index in sorted(indices):
             self.solver_table_model.removeRow(index)
 

src/View/Debug/Window.py

@@ -20,8 +20,8 @@ import logging
 
 from tools import trace, timer
 
-from View.ASubWindow import ASubMainWindow
+from View.Tools.PamhyrWindow import PamhyrWindow
-from View.ListedSubWindow import ListedSubWindow
+from View.Tools.PamhyrPythonEditor import PamhyrPythonEditor
 
 from PyQt5.QtGui import (
     QKeySequence,
@@ -38,34 +38,42 @@ from PyQt5.QtWidgets import (
     QFileDialog, QTableView, QAbstractItemView,
     QUndoStack, QShortcut, QAction, QItemDelegate,
     QComboBox, QVBoxLayout, QHeaderView, QTabWidget,
-    QProgressBar, QLabel, QTextEdit,
+    QProgressBar, QLabel, QTextEdit, QHBoxLayout,
 )
 
+from PyQt5.Qsci import QsciScintilla, QsciLexerPython
+
 logger = logging.getLogger()
 
 _translate = QCoreApplication.translate
 
-class ReplWindow(ASubMainWindow, ListedSubWindow):
+
-    def __init__(self, title="Debug REPL",
+class ReplWindow(PamhyrWindow):
-                 study=None, config=None,
+    _pamhyr_ui = "DebugRepl"
+    _pamhyr_name = "Debug REPL"
+
+    def __init__(self, study=None, config=None,
                  solver=None, parent=None):
-        self._title = title
-
-        self._study = study
-        self._config = config
-        self._parent = parent
-
         super(ReplWindow, self).__init__(
-            name=self._title, ui="DebugRepl", parent=parent
+            title=self._pamhyr_name,
+            study=study,
+            config=config,
+            options=[],
+            parent=parent
         )
-        self.ui.setWindowTitle(self._title)
 
         self.__debug_exec_result__ = None
         self._history = []
         self._history_ind = 0
 
+        self.setup_editor()
         self.setup_connections()
 
+    def setup_editor(self):
+        layout = self.find(QHBoxLayout, "horizontalLayout")
+        self._editor = PamhyrPythonEditor()
+        layout.insertWidget(0, self._editor)
+
     def setup_connections(self):
         self._hup_sc = QShortcut(QKeySequence("ctrl+Up"), self)
         self._hdown_sc = QShortcut(QKeySequence("ctrl+Down"), self)
@@ -77,31 +85,35 @@ class ReplWindow(ASubMainWindow, ListedSubWindow):
     def history_up(self):
         if self._history_ind < len(self._history):
             self._history_ind += 1
-            self.set_plaintext_edit_text("plainTextEdit", self._history[-self._history_ind])
+            self._editor.setText(self._history[-self._history_ind])
 
     def history_down(self):
         if self._history_ind > 0:
             self._history_ind -= 1
-            self.set_plaintext_edit_text("plainTextEdit", self._history[-self._history_ind])
+            self._editor.setText(self._history[-self._history_ind])
         else:
-            self.set_plaintext_edit_text("plainTextEdit", "")
+            self._editor.setText("")
 
     def eval_python(self):
-        code = self.get_plaintext_edit_text("plainTextEdit")
+        code = self._editor.text()
         self._history.append(code)
-        self.set_plaintext_edit_text("plainTextEdit", "")
+        self._editor.setText("")
         self._history_ind = 0
 
+        # Code to rich_code
         rich_code = code.strip().split("\n")
+        # Add return variable for results display at last row
         rich_code[-1] = "self.__debug_exec_result__ = " + rich_code[-1]
         rich_code = "\n".join(rich_code)
-        logger.debug(f"User debug command : {rich_code}")
+        logger.debug(f"User debug command : \n{rich_code}")
         try:
             value = exec(rich_code)
             value = self.__debug_exec_result__
         except Exception as e:
             value = f"<font color=\"red\">" + str(e) + "</font>"
 
+        # Display code
         msg = f"<font color=\"grey\"> # " + code + " #</font>"
         self.find(QTextEdit, "textEdit").append(msg)
+        # Display results
         self.find(QTextEdit, "textEdit").append(str(value))

src/View/Doc/Window.py

@@ -0,0 +1,102 @@
+# Window.py -- Pamhyr
+# Copyright (C) 2023  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-
+
+import os
+import sys
+import logging
+import subprocess
+
+from PyQt5.QtCore import QUrl
+from PyQt5.QtGui import QDesktopServices
+from PyQt5.QtWidgets import QApplication, QWidget, QVBoxLayout, QAction
+from PyQt5.QtWebEngineWidgets import QWebEngineView, QWebEngineSettings
+
+from View.Tools.PamhyrWindow import PamhyrWindow
+
+logger = logging.getLogger()
+
+
+class DocWindow(PamhyrWindow):
+    _pamhyr_ui = "WebView"
+    _pamhyr_name = "Doc"
+
+    @classmethod
+    def _path_file(cls, filename):
+        if ".py" in sys.argv[0]:
+            return os.path.abspath(
+                os.path.join(
+                    os.path.dirname(__file__),
+                    "..", "..", "..", "doc", filename
+                )
+            )
+
+        return os.path.abspath(
+            os.path.join(
+                os.path.dirname(__file__),
+                "..", "..", "..", "..", "doc", filename
+            )
+        )
+
+    def __init__(self, filename=None,
+                 study=None, config=None,
+                 parent=None):
+        super(DocWindow, self).__init__(
+            title=self._pamhyr_name,
+            study=study,
+            config=config,
+            options=[],
+            parent=parent
+        )
+
+        self._path = self._path_file(filename)
+
+        self.setup_web_engine()
+        self.setup_url(self._path)
+        self.setup_connection()
+
+    def setup_connection(self):
+        self.findChild(QAction, "action_back").triggered.connect(self.back)
+        self.findChild(QAction, "action_forward").triggered.connect(
+            self.forward)
+
+        self.findChild(QAction, "action_open").triggered.connect(self.open)
+
+    def setup_web_engine(self):
+        vl = self.find(QVBoxLayout, "verticalLayout")
+        self._web_view = QWebEngineView()
+
+        settings = self._web_view.settings()
+        settings.setAttribute(QWebEngineSettings.PluginsEnabled, True)
+        settings.setAttribute(QWebEngineSettings.JavascriptEnabled, True)
+        settings.setAttribute(QWebEngineSettings.PdfViewerEnabled, True)
+
+        vl.addWidget(self._web_view)
+
+    def setup_url(self, filename):
+        logger.info(f"Open documentation : {filename}")
+        self._web_view.setUrl(QUrl(f"file://{self._path_file(filename)}"))
+
+    def back(self):
+        self._web_view.back()
+
+    def forward(self):
+        self._web_view.forward()
+
+    def open(self):
+        url = QUrl(f"file://{self._path}")
+        QDesktopServices.openUrl(url)

src/View/DummyWindow.py

@@ -16,9 +16,15 @@
 
 # -*- coding: utf-8 -*-
 
-from View.ASubWindow import ASubWindow
+from View.Tools.PamhyrWindow import PamhyrWindow
 
-class DummyWindow(ASubWindow):
+
-    def __init__(self, title="Dummy", parent=None):
+class DummyWindow(PamhyrWindow):
-        super(DummyWindow, self).__init__(name=title, ui="dummy", parent=parent)
+    __ui = "Dummy"
-        self.ui.setWindowTitle(title)
+    __name = "Pamhyr Dummy Window"
+
+    def __init__(self, parent=None):
+        super(DummyWindow, self).__init__(
+            title=self.__name,
+            parent=parent,
+        )