Acoustic data: refactoring plot and fix #17.
parent
5f0fb9ad53
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571ac20d37
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@ -22,6 +22,7 @@
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import os
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import os
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import locale
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import locale
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import logging
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import numpy as np
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import numpy as np
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import pandas as pd
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import pandas as pd
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@ -63,6 +64,7 @@ locale.setlocale(locale.LC_ALL, '')
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_translate = QCoreApplication.translate
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_translate = QCoreApplication.translate
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logger = logging.getLogger()
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class AcousticDataTab(QWidget):
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class AcousticDataTab(QWidget):
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COMPTEUR = 1
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COMPTEUR = 1
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@ -630,7 +632,7 @@ class AcousticDataTab(QWidget):
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self.fileListWidget.itemSelectionChanged.connect(self.compute_tmin_tmax)
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self.fileListWidget.itemSelectionChanged.connect(self.compute_tmin_tmax)
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self.fileListWidget.itemSelectionChanged.connect(self.compute_rmin_rmax)
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self.fileListWidget.itemSelectionChanged.connect(self.compute_rmin_rmax)
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self.fileListWidget.itemSelectionChanged.connect(self.update_frequency_combobox)
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self.fileListWidget.itemSelectionChanged.connect(self.update_frequency_combobox)
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self.fileListWidget.itemSelectionChanged.connect(self.plot_backscattered_acoustic_signal_recording)
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# self.fileListWidget.itemSelectionChanged.connect(self.plot_backscattered_acoustic_signal_recording)
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self.fileListWidget.itemSelectionChanged.connect(self.plot_profile)
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self.fileListWidget.itemSelectionChanged.connect(self.plot_profile)
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self.fileListWidget.itemSelectionChanged.connect(self.update_plot_backscattered_acoustic_signal_recording)
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self.fileListWidget.itemSelectionChanged.connect(self.update_plot_backscattered_acoustic_signal_recording)
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self.fileListWidget.itemSelectionChanged.connect(self.update_plot_profile)
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self.fileListWidget.itemSelectionChanged.connect(self.update_plot_profile)
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@ -1304,6 +1306,8 @@ class AcousticDataTab(QWidget):
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msgBox.setStandardButtons(QMessageBox.Ok)
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msgBox.setStandardButtons(QMessageBox.Ok)
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msgBox.exec()
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msgBox.exec()
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else:
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else:
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self.fileListWidget.blockSignals(True)
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if self.fileListWidget.count() == 0:
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if self.fileListWidget.count() == 0:
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for p, f in zip(stg.path_BS_raw_data,
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for p, f in zip(stg.path_BS_raw_data,
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stg.filename_BS_raw_data):
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stg.filename_BS_raw_data):
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@ -1332,6 +1336,8 @@ class AcousticDataTab(QWidget):
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)
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)
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)
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)
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self.fileListWidget.blockSignals(False)
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def rename_file_in_ListWidget(self, event):
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def rename_file_in_ListWidget(self, event):
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if event == QEvent.MouseButtonPress:
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if event == QEvent.MouseButtonPress:
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@ -2282,59 +2288,83 @@ class AcousticDataTab(QWidget):
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"-" + str("%.5s" % stg.depth[self.fileListWidget.currentRow()][0, 0]))
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"-" + str("%.5s" % stg.depth[self.fileListWidget.currentRow()][0, 0]))
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def plot_backscattered_acoustic_signal_recording(self):
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def plot_backscattered_acoustic_signal_recording(self):
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if self.fileListWidget.count() <= 0:
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return
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if self.fileListWidget.count() > 0:
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layout = self.verticalLayout_groupbox_transect_2Dplot_raw_BS_data
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file_id = self.fileListWidget.currentRow()
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freq_id = self.combobox_frequency_profile.currentIndex()
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self.verticalLayout_groupbox_transect_2Dplot_raw_BS_data.removeWidget(self.toolbar_BS)
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layout.removeWidget(self.toolbar_BS)
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self.verticalLayout_groupbox_transect_2Dplot_raw_BS_data.removeWidget(self.scroll_BS)
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layout.removeWidget(self.scroll_BS)
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self.fig_BS, self.axis_BS = plt.subplots(nrows=stg.freq[self.fileListWidget.currentRow()].shape[0], ncols=1,
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self.fig_BS, self.axis_BS = plt.subplots(
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sharex=False, sharey=False, layout="constrained")
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nrows=stg.freq[file_id].shape[0],
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self.canvas_BS = FigureCanvas(self.fig_BS)
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ncols=1, sharex=False, sharey=False,
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self.toolbar_BS = NavigationToolBar(self.canvas_BS, self)
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layout="constrained"
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)
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self.canvas_BS = FigureCanvas(self.fig_BS)
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self.toolbar_BS = NavigationToolBar(self.canvas_BS, self)
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self.scroll_BS.setWidget(self.canvas_BS)
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self.scroll_BS.setWidget(self.canvas_BS)
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self.verticalLayout_groupbox_transect_2Dplot_raw_BS_data.addWidget(self.toolbar_BS)
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layout.addWidget(self.toolbar_BS)
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self.verticalLayout_groupbox_transect_2Dplot_raw_BS_data.addWidget(self.scroll_BS)
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layout.addWidget(self.scroll_BS)
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for f, _ in enumerate(stg.freq[self.fileListWidget.currentRow()]):
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for f, _ in enumerate(stg.freq[file_id]):
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val_min = np.nanmin(stg.BS_raw_data[file_id][f, :, :])
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val_max = np.nanmax(stg.BS_raw_data[file_id][f, :, :])
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if val_min == 0:
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val_min = 1e-5
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val_min = np.nanmin(stg.BS_raw_data[self.fileListWidget.currentRow()][f, :, :])
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if self.combobox_ABS_system_choice.currentIndex() == 1:
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val_max = np.nanmax(stg.BS_raw_data[self.fileListWidget.currentRow()][f, :, :])
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pcm = self.axis_BS[f].pcolormesh(
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if val_min == 0:
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stg.time[file_id][f, :],
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val_min = 1e-5
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-stg.depth[file_id][f, :],
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stg.BS_raw_data[file_id][f, :, :],
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cmap='viridis',
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norm=LogNorm(vmin=val_min, vmax=val_max)
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)
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elif self.combobox_ABS_system_choice.currentIndex() == 2:
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pcm = self.axis_BS[f].pcolormesh(
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stg.time[file_id][f, :],
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-stg.depth[file_id][f, :],
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np.log(stg.BS_raw_data[file_id][f, :, :]),
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cmap='Blues'
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)
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if self.combobox_ABS_system_choice.currentIndex() == 1:
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self.axis_BS[f].text(
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1, .70, stg.freq_text[file_id][f],
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fontsize=14, fontweight='bold', fontname="DejaVu Sans",
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c="black", alpha=0.5,
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horizontalalignment='right', verticalalignment='bottom',
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transform=self.axis_BS[f].transAxes
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)
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pcm = self.axis_BS[f].pcolormesh(stg.time[self.fileListWidget.currentRow()][f, :],
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# --- Plot red solid line on transect to visualize position of
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-stg.depth[self.fileListWidget.currentRow()][f, :],
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# --- plotted profile ---
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stg.BS_raw_data[self.fileListWidget.currentRow()][f, :, :],
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self.axis_BS[freq_id].plot(
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cmap='viridis', norm=LogNorm(vmin=val_min, vmax=val_max))
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stg.time[file_id][
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freq_id, self.slider.value() - 1
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]
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* np.ones(stg.depth[file_id].shape[1]),
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-stg.depth[file_id][freq_id, :],
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color='red', linestyle="solid", linewidth=2
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)
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elif self.combobox_ABS_system_choice.currentIndex() == 2:
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self.fig_BS.supxlabel('Time (sec)', fontsize=10)
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pcm = self.axis_BS[f].pcolormesh(stg.time[self.fileListWidget.currentRow()][f, :],
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self.fig_BS.supylabel('Depth (m)', fontsize=10)
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-stg.depth[self.fileListWidget.currentRow()][f, :],
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np.log(stg.BS_raw_data[self.fileListWidget.currentRow()][f, :, :]),
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cmap='Blues')
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self.axis_BS[f].text(1, .70, stg.freq_text[self.fileListWidget.currentRow()][f],
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cbar = self.fig_BS.colorbar(
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fontsize=14, fontweight='bold', fontname="DejaVu Sans", c="black", alpha=0.5,
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pcm, ax=self.axis_BS[:],
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horizontalalignment='right', verticalalignment='bottom',
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shrink=1, location='right'
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transform=self.axis_BS[f].transAxes)
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)
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# --- Plot red solid line on transect to visualize position of plotted profile ---
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cbar.set_label(
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self.axis_BS[self.combobox_frequency_profile.currentIndex()].plot(
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label='Acoustic backscatter signal (V)',
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stg.time[self.fileListWidget.currentRow()][self.combobox_frequency_profile.currentIndex(),
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rotation=270, labelpad=10
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self.slider.value() - 1] * np.ones(stg.depth[self.fileListWidget.currentRow()].shape[1]),
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)
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-stg.depth[self.fileListWidget.currentRow()][self.combobox_frequency_profile.currentIndex(), :],
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self.fig_BS.canvas.draw_idle()
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color='red', linestyle="solid", linewidth=2)
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self.fig_BS.supxlabel('Time (sec)', fontsize=10)
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self.fig_BS.supylabel('Depth (m)', fontsize=10)
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cbar = self.fig_BS.colorbar(pcm, ax=self.axis_BS[:], shrink=1, location='right')
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cbar.set_label(label='Acoustic backscatter signal (V)', rotation=270, labelpad=10)
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self.fig_BS.canvas.draw_idle()
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def update_plot_backscattered_acoustic_signal_recording(self):
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def update_plot_backscattered_acoustic_signal_recording(self):
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@ -2465,7 +2495,8 @@ class AcousticDataTab(QWidget):
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self.combobox_frequency_profile.currentIndexChanged.connect(self.update_plot_profile)
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self.combobox_frequency_profile.currentIndexChanged.connect(self.update_plot_profile)
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self.combobox_frequency_profile.currentIndexChanged.connect(
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self.combobox_frequency_profile.currentIndexChanged.connect(
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self.update_plot_backscattered_acoustic_signal_recording)
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self.update_plot_backscattered_acoustic_signal_recording
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)
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self.slider.setMaximum(stg.time[self.fileListWidget.currentRow()].shape[1])
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self.slider.setMaximum(stg.time[self.fileListWidget.currentRow()].shape[1])
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