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@@ -1,3 +1,26 @@
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# ============================================================================== #
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# mainwindow.py - AcouSed #
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# Copyright (C) 2024 INRAE #
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# #
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# This program is free software: you can redistribute it and/or modify #
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# it under the terms of the GNU General Public License as published by #
|
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# the Free Software Foundation, either version 3 of the License, or #
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# (at your option) any later version. #
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# #
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# This program is distributed in the hope that it will be useful, #
|
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# but WITHOUT ANY WARRANTY; without even the implied warranty of #
|
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# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
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# GNU General Public License for more details. #
|
||||
# #
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# You should have received a copy of the GNU General Public License #
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# along with this program. If not, see <https://www.gnu.org/licenses/>. #
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# by Brahim MOUDJED #
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# ============================================================================== #
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# -*- coding: utf-8 -*-
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import matplotlib.pyplot as plt
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import numpy as np
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import settings as stg
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@@ -277,6 +300,7 @@ class AcousticInversionMethodHighConcentration():
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def M_profile_SCC_fine_interpolated(self, sample_depth, M_profile, range_cells, r_bottom):
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res = np.zeros((len(range_cells),)) * np.nan
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print("range_cells ", range_cells.shape)
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l0 = sample_depth
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print("l0 = ", l0)
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l1 = [l0.index(x) for x in sorted(l0)]
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@@ -322,6 +346,9 @@ class AcousticInversionMethodHighConcentration():
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i += -1
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if r_bottom.size != 0:
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print("res ", res.shape)
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print("range_cells ", len(range_cells))
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# print("r_bottom ", len(r_bottom))
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res[np.where(range_cells > r_bottom)] = np.nan
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loc_point_lin_interp0 = range_cells[np.where((range_cells > l2[0]) & (range_cells < l2[-1]))]
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@@ -1,68 +1,60 @@
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import sys
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# ============================================================================== #
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# calibration_constant_kt.py - AcouSed #
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# Copyright (C) 2024 INRAE #
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# #
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# This program is free software: you can redistribute it and/or modify #
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# it under the terms of the GNU General Public License as published by #
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# the Free Software Foundation, either version 3 of the License, or #
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# (at your option) any later version. #
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# #
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# This program is distributed in the hope that it will be useful, #
|
||||
# but WITHOUT ANY WARRANTY; without even the implied warranty of #
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
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||||
# GNU General Public License for more details. #
|
||||
# #
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# You should have received a copy of the GNU General Public License #
|
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# along with this program. If not, see <https://www.gnu.org/licenses/>. #
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import os
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import pandas as pd
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from PyQt5.QtGui import QIcon, QPixmap
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from PyQt5.QtWidgets import (QWidget, QLabel, QHBoxLayout, QVBoxLayout, QApplication, QMainWindow, QGridLayout,
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QDialog, QDialogButtonBox, QPushButton, QTextEdit, QFrame, QTabWidget, QScrollArea,
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QLineEdit, QFileDialog)
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from PyQt5.QtCore import Qt
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# by Brahim MOUDJED #
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# ============================================================================== #
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import numpy as np
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from os import path
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import matplotlib.pyplot as plt
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from matplotlib.backends.backend_qt5agg import FigureCanvasQTAgg as FigureCanvas
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from matplotlib.backends.backend_qt5agg import NavigationToolbar2QT as NavigationToolBar
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from matplotlib.colors import LogNorm, BoundaryNorm
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import datetime
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import settings as stg
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from Translation.constant_string import HORIZONTAL
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from settings import depth_cross_section
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import pandas as pd
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from PyQt5.QtWidgets import (QWidget, QVBoxLayout, QDialog, QTabWidget, QGridLayout, QScrollArea,
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QFileDialog, QMessageBox, QLabel)
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from PyQt5.QtCore import Qt
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class CalibrationConstantKt(QDialog):
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icon_folder = (
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"/home/bmoudjed/Documents/3 SSC acoustic meas project/Graphical interface project/acoused/icons/folder.png")
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def __init__(self, parent=None):
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super(CalibrationConstantKt, self).__init__(parent)
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self.setGeometry(400, 200, 300, 400)
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self.setWindowTitle("Calibration constant kt")
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self.verticalLayout_Main = QVBoxLayout()
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self.setLayout(self.verticalLayout_Main)
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self.horizontalLayout_file = QHBoxLayout()
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self.verticalLayout_Main.addLayout(self.horizontalLayout_file)
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self.pushbutton_file = QPushButton()
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self.pushbutton_file.setIcon(QIcon(CalibrationConstantKt.icon_folder))
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self.horizontalLayout_file.addWidget(self.pushbutton_file)
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# self.pushbutton_file.clicked.connect(self.open_dialog_box)
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self.lineEdit_file = QLineEdit()
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self.horizontalLayout_file.addWidget(self.lineEdit_file)
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self.tab = QTabWidget()
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self.verticalLayout_Main.addWidget(self.tab)
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# "/home/bmoudjed/Documents/3 SSC acoustic meas project/Graphical interface project/acoused/
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self.data_ABS = pd.read_excel("ABS_calibration_constant_kt.xlsx", header=0, sheet_name=None)
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self.lineEdit_file.setText("ABS_calibration_constant_kt.xlsx")
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try:
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self.data_ABS = pd.read_excel("ABS_calibration_constant_kt.xlsx", header=0, sheet_name=None)
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print([*self.data_ABS.values()][0].columns[1])
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except FileNotFoundError as e:
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msgBox = QMessageBox()
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msgBox.setWindowTitle("File Not Found Error")
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msgBox.setIcon(QMessageBox.Warning)
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msgBox.setText("Please check Excel file name for the calibration constant kt \n"
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"It should be an excel file named : 'ABS_calibration_constant_kt.xlsx'")
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msgBox.setStandardButtons(QMessageBox.Ok)
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msgBox.exec()
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self.setLayout(self.verticalLayout_Main)
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self.load_freq_and_kt_values()
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def open_dialog_box(self):
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@@ -86,12 +78,12 @@ class CalibrationConstantKt(QDialog):
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for t_index, t_value in enumerate(list(self.data_ABS.keys())):
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exec("self.tab_" + str(t_index) + "= QWidget()")
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eval("self.tab.addTab(self.tab_" + str(t_index) + ", '" + str(t_value) + "')")
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exec("self.tab_calib_" + str(t_index) + "= QWidget()")
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eval("self.tab.addTab(self.tab_calib_" + str(t_index) + ", '" + str(t_value) + "')")
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exec("self.verticalLayout_tab_" + str(t_index) + "= QVBoxLayout(self.tab_" + str(t_index) + ")")
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exec("self.verticalLayout_tab_" + str(t_index) + "= QVBoxLayout(self.tab_calib_" + str(t_index) + ")")
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exec("self.scrollarea_tab_" + str(t_index) + " = QScrollArea(self.tab_" + str(t_index) + ")")
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exec("self.scrollarea_tab_" + str(t_index) + " = QScrollArea(self.tab_calib_" + str(t_index) + ")")
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eval("self.scrollarea_tab_" + str(t_index) + ".setVerticalScrollBarPolicy(Qt.ScrollBarAlwaysOn)")
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eval("self.scrollarea_tab_" + str(t_index) + ".setHorizontalScrollBarPolicy(Qt.ScrollBarAlwaysOff)")
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eval("self.scrollarea_tab_" + str(t_index) + ".setWidgetResizable(True)")
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@@ -122,10 +114,10 @@ class CalibrationConstantKt(QDialog):
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", " + str(x+1) + ", 1, 1, 1, Qt.AlignCenter)")
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if __name__ == "__main__":
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app = QApplication(sys.argv)
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cal = CalibrationConstantKt()
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cal.show()
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# sys.exit(app.exec_())
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app.exec()
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# if __name__ == "__main__":
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# app = QApplication(sys.argv)
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# cal = CalibrationConstantKt()
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# cal.show()
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# # sys.exit(app.exec_())
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# app.exec()
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@@ -1,3 +1,26 @@
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# ============================================================================== #
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# create_table_for_save_as.py - AcouSed #
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# Copyright (C) 2024 INRAE #
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||||
# #
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# This program is free software: you can redistribute it and/or modify #
|
||||
# it under the terms of the GNU General Public License as published by #
|
||||
# the Free Software Foundation, either version 3 of the License, or #
|
||||
# (at your option) any later version. #
|
||||
# #
|
||||
# This program is distributed in the hope that it will be useful, #
|
||||
# but WITHOUT ANY WARRANTY; without even the implied warranty of #
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
|
||||
# GNU General Public License for more details. #
|
||||
# #
|
||||
# You should have received a copy of the GNU General Public License #
|
||||
# along with this program. If not, see <https://www.gnu.org/licenses/>. #
|
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|
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# by Brahim MOUDJED #
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# ============================================================================== #
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# -*- coding: utf-8 -*-
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import numpy as np
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from PyQt5.QtWidgets import QFileDialog, QApplication, QMessageBox
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import sqlite3
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@@ -26,8 +49,11 @@ class CreateTableForSaveAs:
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self.create_Measure = """ CREATE TABLE Measure(
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ID INTEGER PRIMARY KEY AUTOINCREMENT,
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acoustic_data INTEGER,
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frequency FLOAT,
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acoustic_data INTEGER,
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Date DATE,
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Hour TIME,
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frequency FLOAT,
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sound_attenuation FLOAT,
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kt_read FLOAT,
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kt_corrected FLOAT,
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NbProfiles FLOAT,
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@@ -38,20 +64,23 @@ class CreateTableForSaveAs:
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NbPingsPerSeconds FLOAT,
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NbPingsAveragedPerProfile FLOAT,
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GainRx FLOAT,
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GainTx FLOAT)
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GainTx FLOAT
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)
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"""
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self.create_BSRawData = '''CREATE TABLE BSRawData(
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ID INTEGER PRIMARY KEY AUTOINCREMENT,
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acoustic_data INTEGER,
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time BLOB, depth BLOB, BS_raw_data BLOB,
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time_reshape BLOB, depth_reshape BLOB, BS_raw_data_reshape BLOB,
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time_cross_section BLOB, depth_cross_section BLOB, BS_cross_section BLOB, BS_stream_bed BLOB,
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depth_bottom, val_bottom, ind_bottom,
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time_noise BLOB, depth_noise BLOB, BS_noise_raw_data BLOB,
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SNR_raw_data BLOB, SNR_cross_section BLOB, SNR_stream_bed BLOB,
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BS_raw_data_pre_process_SNR BLOB, BS_raw_data_pre_process_average BLOB,
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BS_cross_section_pre_process_SNR BLOB, BS_cross_section_pre_process_average BLOB,
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BS_stream_bed_pre_process_SNR BLOB, BS_stream_bed_pre_process_average BLOB
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BS_stream_bed_pre_process_SNR BLOB, BS_stream_bed_pre_process_average BLOB,
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BS_mean BLOB
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)'''
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self.create_Settings = '''CREATE TABLE Settings(
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@@ -60,16 +89,27 @@ class CreateTableForSaveAs:
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temperature FLOAT,
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tmin_index FLOAT, tmin_value FLOAT, tmax_index FLOAT, tmax_value FLOAT,
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rmin_index FLOAT, rmin_value FLOAT, rmax_index FLOAT, rmax_value FLOAT,
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freq_bottom_detection, dept_bottom_detection_min, depth_bottom_detection_max, depth_bottom_detection_1st_int_area,
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freq_bottom_detection_index FLOAT, freq_bottom_detection_value STRING,
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SNR_filter_value FLOAT, Nb_cells_to_average_BS_signal FLOAT
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)'''
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self.create_SedimentsFile = """CREATE TABLE SedimentsFile(
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ID INTEGER PRIMARY KEY AUTOINCREMENT,
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path_fine STRING,
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filename_fine STRING
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)
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"""
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ID INTEGER PRIMARY KEY AUTOINCREMENT,
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path_fine STRING,
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filename_fine STRING,
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radius_grain_fine BLOB,
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path_sand STRING,
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filename_sand STRING,
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radius_grain_sand BLOB,
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time_column_label STRING,
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distance_from_bank_column_label STRING,
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depth_column_label STRING,
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Ctot_fine_column_label STRING,
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D50_fine_column_label STRING,
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Ctot_sand_column_label STRING,
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D50_sand_column_label STRING
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)
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"""
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self.create_SedimentsData = """CREATE TABLE SedimentsData(
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ID INTEGER PRIMARY KEY AUTOINCREMENT,
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@@ -82,7 +122,17 @@ class CreateTableForSaveAs:
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Ctot_fine_per_cent FLOAT,
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D50_fine FLOAT,
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frac_vol_fine BLOB,
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frac_vol_fine_cumul BLOB
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frac_vol_fine_cumul BLOB,
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sample_sand_name STRING,
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sample_sand_index INTEGER,
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distance_from_bank_sand FLOAT,
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depth_sand FLOAT,
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time_sand FLOAT,
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Ctot_sand FLOAT,
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Ctot_sand_per_cent FLOAT,
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D50_sand FLOAT,
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frac_vol_sand BLOB,
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frac_vol_sand_cumul BLOB
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)
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"""
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@@ -148,9 +198,9 @@ class CreateTableForSaveAs:
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cur = cnx.cursor()
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# --------------------------------------------------------------------------------------------------------------
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# ++++++++++++++++++
|
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# --- Table File ---
|
||||
# ++++++++++++++++++
|
||||
# +++++++++++++++++++++++++++
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# --- Table Acoustic File ---
|
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# +++++++++++++++++++++++++++
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start_table_File = time.time()
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@@ -188,17 +238,21 @@ class CreateTableForSaveAs:
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||||
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# Execute the CREATE TABLE statement
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cur.execute(self.create_Measure)
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print("stg.date ", stg.date, "stg.hour ", stg.hour)
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||||
# Fill the table Measure
|
||||
for i in stg.acoustic_data:
|
||||
|
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for j in range(stg.freq[i].shape[0]):
|
||||
|
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cur.execute(''' INSERT into Measure(acoustic_data, frequency, kt_read, kt_corrected, NbProfiles,
|
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NbProfilesPerSeconds, NbCells, CellSize, PulseLength,
|
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NbPingsPerSeconds, NbPingsAveragedPerProfile, GainRx, GainTx)
|
||||
VALUES(?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)''',
|
||||
(stg.acoustic_data[i], stg.freq[i][j], stg.kt_read[j], stg.kt_corrected[j],
|
||||
cur.execute(''' INSERT into Measure(acoustic_data, Date, Hour, frequency, sound_attenuation, kt_read, kt_corrected,
|
||||
NbProfiles, NbProfilesPerSeconds, NbCells, CellSize, PulseLength,
|
||||
NbPingsPerSeconds, NbPingsAveragedPerProfile, GainRx, GainTx
|
||||
)
|
||||
VALUES(?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)''',
|
||||
(stg.acoustic_data[i], #stg.date[i], stg.hour[i],
|
||||
str(stg.date[i].year) + str('-') + str(stg.date[i].month) + str('-') + str(stg.date[i].day),
|
||||
str(stg.hour[i].hour) + str(':') + str(stg.hour[i].minute),
|
||||
stg.freq[i][j], stg.water_attenuation[i][j], stg.kt_read[j], stg.kt_corrected[j],
|
||||
stg.nb_profiles[i][j], stg.nb_profiles_per_sec[i][j], stg.nb_cells[i][j],
|
||||
stg.cell_size[i][j], stg.pulse_length[i][j], stg.nb_pings_per_sec[i][j],
|
||||
stg.nb_pings_averaged_per_profile[i][j], stg.gain_rx[i][j], stg.gain_tx[i][j]))
|
||||
@@ -223,26 +277,34 @@ class CreateTableForSaveAs:
|
||||
for i in stg.acoustic_data:
|
||||
|
||||
cur.execute(''' INSERT into BSRawData(acoustic_data, time, depth, BS_raw_data,
|
||||
time_reshape, depth_reshape, BS_raw_data_reshape,
|
||||
time_cross_section, depth_cross_section,
|
||||
BS_cross_section, BS_stream_bed,
|
||||
depth_bottom, val_bottom, ind_bottom,
|
||||
time_noise, depth_noise, BS_noise_raw_data,
|
||||
SNR_raw_data, SNR_cross_section, SNR_stream_bed,
|
||||
BS_raw_data_pre_process_SNR, BS_raw_data_pre_process_average,
|
||||
BS_cross_section_pre_process_SNR, BS_cross_section_pre_process_average,
|
||||
BS_stream_bed_pre_process_SNR, BS_stream_bed_pre_process_average)
|
||||
VALUES(?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)''',
|
||||
BS_stream_bed_pre_process_SNR, BS_stream_bed_pre_process_average,
|
||||
BS_mean)
|
||||
VALUES(?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)''',
|
||||
(stg.acoustic_data[i], stg.time[i].tobytes(),
|
||||
stg.depth[i].tobytes(), stg.BS_raw_data[i].tobytes(),
|
||||
stg.time_reshape[i].tobytes(), stg.depth_reshape[i].tobytes(), stg.BS_raw_data_reshape[i].tobytes(),
|
||||
stg.time_cross_section[i].tobytes(), stg.depth_cross_section[i].tobytes(),
|
||||
stg.BS_cross_section[i].tobytes(), stg.BS_stream_bed[i].tobytes(),
|
||||
stg.depth_bottom[i].tobytes(), np.array(stg.val_bottom[i]).tobytes(), np.array(stg.ind_bottom[i]).tobytes(),
|
||||
stg.time_noise[i].tobytes(), stg.depth_noise[i].tobytes(), stg.BS_noise_raw_data[i].tobytes(),
|
||||
stg.SNR_raw_data[i].tobytes(), stg.SNR_cross_section[i].tobytes(), stg.SNR_stream_bed[i].tobytes(),
|
||||
stg.BS_raw_data_pre_process_SNR[i].tobytes(), stg.BS_raw_data_pre_process_average[i].tobytes(),
|
||||
stg.BS_cross_section_pre_process_SNR[i].tobytes(), stg.BS_cross_section_pre_process_average[i].tobytes(),
|
||||
stg.BS_stream_bed_pre_process_SNR[i].tobytes(), stg.BS_stream_bed_pre_process_average[i].tobytes()
|
||||
stg.BS_stream_bed_pre_process_SNR[i].tobytes(), stg.BS_stream_bed_pre_process_average[i].tobytes(),
|
||||
stg.BS_mean[i].tobytes()
|
||||
)
|
||||
)
|
||||
|
||||
print("stg.ind_bottom ", stg.ind_bottom[i])
|
||||
print(np.array([stg.ind_bottom[i]]), np.array(stg.ind_bottom[i]).shape)
|
||||
# Commit the transaction after executing INSERT.
|
||||
cnx.commit()
|
||||
|
||||
@@ -265,12 +327,16 @@ class CreateTableForSaveAs:
|
||||
cur.execute('''INSERT into Settings(acoustic_data, temperature,
|
||||
tmin_index, tmin_value, tmax_index, tmax_value,
|
||||
rmin_index, rmin_value, rmax_index, rmax_value,
|
||||
SNR_filter_value, Nb_cells_to_average_BS_signal)
|
||||
VALUES(?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)''',
|
||||
freq_bottom_detection_index, freq_bottom_detection_value,
|
||||
SNR_filter_value, Nb_cells_to_average_BS_signal
|
||||
)
|
||||
VALUES(?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)''',
|
||||
(stg.acoustic_data[i], stg.temperature,
|
||||
stg.tmin[i][0], stg.tmin[i][1], stg.tmax[i][0], stg.tmax[i][1],
|
||||
stg.rmin[i][0], stg.rmin[i][1], stg.rmax[i][0], stg.rmax[i][1],
|
||||
stg.SNR_filter_value[i], stg.Nb_cells_to_average_BS_signal[i])
|
||||
stg.freq_bottom_detection[i][0], stg.freq_bottom_detection[i][1],
|
||||
stg.SNR_filter_value[i], stg.Nb_cells_to_average_BS_signal[i]
|
||||
)
|
||||
)
|
||||
|
||||
cnx.commit()
|
||||
@@ -288,8 +354,16 @@ class CreateTableForSaveAs:
|
||||
|
||||
cur.execute(self.create_SedimentsFile)
|
||||
|
||||
cur.execute('''INSERT into SedimentsFile(path_fine, filename_fine) VALUES(?, ?)''',
|
||||
(stg.path_fine, stg.filename_fine))
|
||||
cur.execute('''INSERT into SedimentsFile(path_fine, filename_fine, radius_grain_fine,
|
||||
path_sand, filename_sand, radius_grain_sand,
|
||||
time_column_label, distance_from_bank_column_label,
|
||||
depth_column_label, Ctot_fine_column_label, D50_fine_column_label,
|
||||
Ctot_sand_column_label, D50_sand_column_label)
|
||||
VALUES(?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)''',
|
||||
(stg.path_fine, stg.filename_fine, stg.radius_grain_fine.tobytes(),
|
||||
stg.path_sand, stg.filename_sand, stg.radius_grain_sand.tobytes(),
|
||||
stg.columns_fine[0], stg.columns_fine[1], stg.columns_fine[2],
|
||||
stg.columns_fine[3], stg.columns_fine[4], stg.columns_sand[3], stg.columns_sand[4]))
|
||||
|
||||
cnx.commit()
|
||||
|
||||
@@ -308,13 +382,21 @@ class CreateTableForSaveAs:
|
||||
|
||||
for f in range(len(stg.sample_fine)):
|
||||
cur.execute('''INSERT into SedimentsData(sample_fine_name, sample_fine_index, distance_from_bank_fine,
|
||||
depth_fine, time_fine, Ctot_fine, Ctot_fine_per_cent, D50_fine, frac_vol_fine,
|
||||
frac_vol_fine_cumul)
|
||||
VALUES(?, ?, ?, ?, ?, ?, ?, ?, ?, ?)''',
|
||||
depth_fine, time_fine, Ctot_fine, Ctot_fine_per_cent, D50_fine,
|
||||
frac_vol_fine, frac_vol_fine_cumul,
|
||||
sample_sand_name, sample_sand_index, distance_from_bank_sand,
|
||||
depth_sand, time_sand, Ctot_sand, Ctot_sand_per_cent, D50_sand,
|
||||
frac_vol_sand, frac_vol_sand_cumul
|
||||
)
|
||||
VALUES(?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)''',
|
||||
(stg.sample_fine[f][0] , stg.sample_fine[f][1],
|
||||
stg.distance_from_bank_fine[f], stg.depth_fine[f], stg.time_fine[f], stg.Ctot_fine[f],
|
||||
stg.Ctot_fine_per_cent[f], stg.D50_fine[f],
|
||||
stg.frac_vol_fine[f].tobytes(), stg.frac_vol_fine_cumul[f].tobytes()))
|
||||
stg.frac_vol_fine[f].tobytes(), stg.frac_vol_fine_cumul[f].tobytes(),
|
||||
stg.sample_sand[f][0], stg.sample_sand[f][1],
|
||||
stg.distance_from_bank_sand[f], stg.depth_sand[f], stg.time_sand[f], stg.Ctot_sand[f],
|
||||
stg.Ctot_sand_per_cent[f], stg.D50_sand[f],
|
||||
stg.frac_vol_sand[f].tobytes(), stg.frac_vol_sand_cumul[f].tobytes()))
|
||||
|
||||
cnx.commit()
|
||||
|
||||
|
||||
+349
-75
@@ -1,112 +1,370 @@
|
||||
# ============================================================================== #
|
||||
# read_table_for_open.py - AcouSed #
|
||||
# Copyright (C) 2024 INRAE #
|
||||
# #
|
||||
# This program is free software: you can redistribute it and/or modify #
|
||||
# it under the terms of the GNU General Public License as published by #
|
||||
# the Free Software Foundation, either version 3 of the License, or #
|
||||
# (at your option) any later version. #
|
||||
# #
|
||||
# This program is distributed in the hope that it will be useful, #
|
||||
# but WITHOUT ANY WARRANTY; without even the implied warranty of #
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
|
||||
# GNU General Public License for more details. #
|
||||
# #
|
||||
# You should have received a copy of the GNU General Public License #
|
||||
# along with this program. If not, see <https://www.gnu.org/licenses/>. #
|
||||
|
||||
# by Brahim MOUDJED #
|
||||
# ============================================================================== #
|
||||
|
||||
# -*- coding: utf-8 -*-
|
||||
|
||||
|
||||
import sys
|
||||
import numpy as np
|
||||
from PyQt5.QtWidgets import QFileDialog, QApplication
|
||||
from PyQt5.QtWidgets import QFileDialog, QApplication, QWidget, QTabWidget
|
||||
import sqlite3
|
||||
from os import path, chdir
|
||||
import settings as stg
|
||||
from settings import BS_raw_data, acoustic_data
|
||||
|
||||
from View.acoustic_data_tab import AcousticDataTab
|
||||
|
||||
class ReadTableForOpen:
|
||||
|
||||
def __init__(self):
|
||||
|
||||
self.open_file_dialog()
|
||||
|
||||
chdir(stg.dirname_open)
|
||||
self.sql_file_to_open = open(stg.filename_open)
|
||||
|
||||
self.read_table()
|
||||
|
||||
# self.reshape_variables()
|
||||
pass
|
||||
|
||||
def open_file_dialog(self):
|
||||
|
||||
name = QFileDialog.getOpenFileName(caption="Open Acoused file", directory="", filter="Acoused file (*.acd)")
|
||||
name = QFileDialog.getOpenFileName(caption="Open Acoused file", directory="", filter="Acoused file (*.acd)",
|
||||
options=QFileDialog.DontUseNativeDialog)
|
||||
|
||||
if name:
|
||||
|
||||
stg.dirname_open = path.dirname(name[0])
|
||||
stg.filename_open = path.basename(name[0])
|
||||
|
||||
chdir(stg.dirname_open)
|
||||
self.sql_file_to_open = open(stg.filename_open)
|
||||
|
||||
self.read_table()
|
||||
|
||||
def read_table(self):
|
||||
|
||||
stg.read_table_trigger = 1
|
||||
|
||||
# connexion to File db
|
||||
cnx = sqlite3.connect(stg.filename_open)
|
||||
|
||||
# Create database cursor to execute SQL statements and fetch results from SQL queries.
|
||||
cur = cnx.cursor()
|
||||
|
||||
query = '''SELECT acoustic_data, acoustic_file FROM File'''
|
||||
data = cur.execute(query).fetchall()
|
||||
stg.acoustic_data, stg.filename_BS_raw_data = [x[0] for x in data], [y[1] for y in data]
|
||||
# --------------------------------------------------------------------------------------------------------------
|
||||
# +++++++++++++++++++++++++++
|
||||
# --- Table Acoustic File ---
|
||||
# +++++++++++++++++++++++++++
|
||||
|
||||
for i in stg.acoustic_data:
|
||||
query0 = f'''SELECT acoustic_data FROM AcousticFile'''
|
||||
data0 = cur.execute(query0).fetchall()
|
||||
print("data0 ", data0)
|
||||
|
||||
query1 = f'''SELECT frequency, kt, NbProfiles, NbProfilesPerSeconds, "
|
||||
f"NbCells, CellSize, PulseLength, NbPingsPerSeconds, "
|
||||
f"NbPingsAveragedPerProfile, GainRx, GainTx
|
||||
FROM Measure WHERE (acoustic_data = {i})'''
|
||||
stg.acoustic_data = [x[0] for x in data0]
|
||||
print("stg.acoustic_data ", stg.acoustic_data)
|
||||
|
||||
for k in range(len(stg.acoustic_data)):
|
||||
print("hello")
|
||||
query = f'''SELECT acoustic_data, acoustic_file, ABS_name, path_BS_noise_data, filename_BS_noise_data,
|
||||
noise_method, noise_value, data_preprocessed FROM AcousticFile WHERE (acoustic_data = {k})'''
|
||||
data = cur.execute(query).fetchall()
|
||||
print("data acoustic file", data)
|
||||
|
||||
stg.filename_BS_raw_data.append([str(y[1]) + '.aqa' for y in data][0])
|
||||
stg.ABS_name.append([z[2] for z in data][0])
|
||||
stg.path_BS_noise_data.append([z[3] for z in data][0])
|
||||
stg.filename_BS_noise_data.append([z[4] for z in data][0])
|
||||
stg.noise_method.append([z[5] for z in data][0])
|
||||
stg.noise_value.append([z[6] for z in data][0])
|
||||
stg.data_preprocessed.append([z[7] for z in data][0])
|
||||
|
||||
print("data acoustic file ", stg.filename_BS_raw_data, stg.ABS_name, stg.path_BS_noise_data, stg.filename_BS_noise_data,
|
||||
stg.noise_method, stg.noise_value, stg.data_preprocessed)
|
||||
|
||||
# --------------------------------------------------------------------------------------------------------------
|
||||
# +++++++++++++++++++++
|
||||
# --- Table Measure ---
|
||||
# +++++++++++++++++++++
|
||||
|
||||
stg.date = [0]*len(stg.acoustic_data)
|
||||
stg.hour = [0]*len(stg.acoustic_data)
|
||||
for i in range(len(stg.acoustic_data)):
|
||||
print("i = ", i)
|
||||
query1 = f'''SELECT acoustic_data, Date, Hour, frequency, sound_attenuation, kt_read, kt_corrected, NbProfiles,
|
||||
NbProfilesPerSeconds, NbCells, CellSize, PulseLength, NbPingsPerSeconds, NbPingsAveragedPerProfile,
|
||||
GainRx, GainTx FROM Measure WHERE (acoustic_data = {i})'''
|
||||
data1 = cur.execute(query1).fetchall()
|
||||
# print(data1)
|
||||
# print([x[0] for x in data1])
|
||||
stg.freq.append([x[0] for x in data1])
|
||||
stg.kt.append([x[1] for x in data1])
|
||||
stg.nb_profiles.append([x[2] for x in data1])
|
||||
stg.nb_profiles_per_sec.append([x[3] for x in data1])
|
||||
stg.nb_cells.append([x[4] for x in data1])
|
||||
stg.cell_size.append([x[5] for x in data1])
|
||||
stg.pulse_length.append([x[6] for x in data1])
|
||||
stg.nb_pings_per_sec.append([x[7] for x in data1])
|
||||
stg.nb_pings_averaged_per_profile.append([x[8] for x in data1])
|
||||
stg.gain_rx.append([x[9] for x in data1])
|
||||
stg.gain_tx.append([x[10] for x in data1])
|
||||
|
||||
# for f_ind, f_val in enumerate(stg.freq[i]):
|
||||
#
|
||||
# exec("query2 = '''SELECT time_" + str(int(f_val)) + ", depth_" + str(int(f_val)) + ", BS_raw_data_" + str(int(f_val)) +
|
||||
# " FROM BSRawData_" + str(int(i)) + " WHERE (acoustic_data = " + str(i) + ") ''' ")
|
||||
# exec("data2 = cur.execute(query2).fetchall()")
|
||||
# # print(eval("data2"))
|
||||
#
|
||||
# if f_ind == 0:
|
||||
# time_reshape_temp = np.array([[x[0] for x in eval("data2")]])
|
||||
# # print("1 time_reshape_temp.shape ", time_reshape_temp.shape)
|
||||
# depth_reshape_temp = np.array([[x[1] for x in eval("data2")]])
|
||||
# BS_raw_data_reshape_temp = np.array([[x[2] for x in eval("data2")]])
|
||||
# else:
|
||||
# time_reshape_temp = np.insert(time_reshape_temp, f_ind, [x[0] for x in eval("data2")], axis=0)
|
||||
# # print("2 time_reshape_temp.shape ", time_reshape_temp.shape)
|
||||
# depth_reshape_temp = np.insert(depth_reshape_temp, f_ind, [x[1] for x in eval("data2")], axis=0)
|
||||
# BS_raw_data_reshape_temp = np.insert(BS_raw_data_reshape_temp, f_ind, [x[1] for x in eval("data2")], axis=0)
|
||||
#
|
||||
# stg.time_reshape.append(time_reshape_temp.transpose())
|
||||
# # print(len(stg.time_reshape))
|
||||
# # print(stg.time_reshape[i].shape)
|
||||
# stg.depth_reshape.append(depth_reshape_temp.transpose())
|
||||
# stg.BS_raw_data_reshape.append(BS_raw_data_reshape_temp.transpose())
|
||||
print("--------------------------------------")
|
||||
print("data1 ", data1)
|
||||
|
||||
query2 = f'''SELECT acoustic_data, time, depth, BS_raw_data FROM BSRawData WHERE (acoustic_data = {i})'''
|
||||
stg.date[i] = data1[0][1]
|
||||
stg.hour[i] = data1[0][2]
|
||||
stg.freq.append(np.array([x[3] for x in data1]))
|
||||
stg.freq_text.append([str(x[3]*1e-6) + 'MHz' for x in data1])
|
||||
stg.water_attenuation.append([x[4] for x in data1])
|
||||
stg.kt_read.append([x[5] for x in data1])
|
||||
stg.kt_corrected = [x[6] for x in data1]
|
||||
stg.nb_profiles.append([x[7] for x in data1])
|
||||
stg.nb_profiles_per_sec.append([x[8] for x in data1])
|
||||
stg.nb_cells.append([x[9] for x in data1])
|
||||
stg.cell_size.append([x[10] for x in data1])
|
||||
stg.pulse_length.append([x[11] for x in data1])
|
||||
stg.nb_pings_per_sec.append([x[12] for x in data1])
|
||||
stg.nb_pings_averaged_per_profile.append([x[13] for x in data1])
|
||||
stg.gain_rx.append([x[14] for x in data1])
|
||||
stg.gain_tx.append([x[15] for x in data1])
|
||||
|
||||
print(stg.acoustic_data, stg.freq, stg.water_attenuation, stg.kt_read, stg.kt_corrected, stg.nb_profiles, stg.nb_profiles_per_sec,
|
||||
stg.nb_cells, stg.cell_size, stg.pulse_length, stg.nb_pings_per_sec, stg.nb_pings_averaged_per_profile,
|
||||
stg.gain_rx, stg.gain_tx)
|
||||
|
||||
print(stg.date)
|
||||
print(stg.hour)
|
||||
|
||||
# --------------------------------------------------------------------------------------------------------------
|
||||
# +++++++++++++++++++++++
|
||||
# --- Table BSRawData ---
|
||||
# ++++++++++++++++++++++
|
||||
print("len stg.acoustic_data ", len(stg.acoustic_data))
|
||||
for j in range(len(stg.acoustic_data)):
|
||||
print(f"j = {j}")
|
||||
query2 = f'''SELECT acoustic_data, time, depth, BS_raw_data,
|
||||
time_reshape, depth_reshape, BS_raw_data_reshape,
|
||||
time_cross_section, depth_cross_section,
|
||||
BS_cross_section, BS_stream_bed,
|
||||
depth_bottom, val_bottom, ind_bottom,
|
||||
time_noise, depth_noise, BS_noise_raw_data,
|
||||
SNR_raw_data, SNR_cross_section, SNR_stream_bed,
|
||||
BS_raw_data_pre_process_SNR, BS_raw_data_pre_process_average,
|
||||
BS_cross_section_pre_process_SNR, BS_cross_section_pre_process_average,
|
||||
BS_stream_bed_pre_process_SNR, BS_stream_bed_pre_process_average, BS_mean
|
||||
FROM BSRawData WHERE (acoustic_data = {j})'''
|
||||
|
||||
data2 = cur.execute(query2).fetchall()
|
||||
print("len(data2) ", len(data2[0]))
|
||||
# print("data2 : ", data2)
|
||||
# data2_retreived = np.frombuffer(data2[0][1], dtype=np.float64)
|
||||
# print("", data2_retreived)
|
||||
print("len data2 ", len(data2))
|
||||
|
||||
stg.time.append(np.frombuffer(data2[0][1], dtype=np.float64).reshape((len(stg.freq[i]), -1)))
|
||||
print(stg.time[0].shape)
|
||||
stg.time.append(np.frombuffer(data2[0][1], dtype=np.float64).reshape((stg.freq[j].shape[0], -1)))
|
||||
print("stg.time[0].shape ", stg.time[j].shape, np.frombuffer(data2[0][1], dtype=np.float64).shape)
|
||||
print(stg.time)
|
||||
stg.depth.append(np.frombuffer(data2[0][2], dtype=np.float64).reshape(len(stg.freq[i]), -1))
|
||||
print(stg.depth[0].shape)
|
||||
stg.depth.append(np.frombuffer(data2[0][2], dtype=np.float64).reshape((stg.freq[j].shape[0], -1)))
|
||||
print("stg.depth[0].shape ", stg.depth[j].shape)
|
||||
print(stg.depth)
|
||||
stg.BS_raw_data.append(np.frombuffer(data2[0][3], dtype=np.float64))
|
||||
stg.BS_raw_data.append(np.frombuffer(data2[0][3], dtype=np.float64).reshape((stg.freq[j].shape[0], stg.depth[j].shape[1], stg.time[j].shape[1])))
|
||||
print("BS_raw_data ", stg.BS_raw_data[j].shape)
|
||||
stg.time_reshape.append(np.frombuffer(data2[0][4], dtype=np.float64).reshape((-1, stg.freq[j].shape[0])))
|
||||
print("stg.time_reshape[0].shape ", stg.time_reshape[j].shape)
|
||||
stg.depth_reshape.append(np.frombuffer(data2[0][5], dtype=np.float64).reshape((-1, stg.freq[j].shape[0])))
|
||||
stg.BS_raw_data_reshape.append(np.frombuffer(data2[0][6], dtype=np.float64).reshape((-1, stg.freq[j].shape[0])))
|
||||
print("time cross section ", stg.time_cross_section, stg.time_cross_section == [])
|
||||
|
||||
# time_reshape_temp = np.insert(time_reshape_temp, time_reshape_temp.shape[0], [x[0] for x in eval("data2")], axis=0)
|
||||
# stg.depth_reshape.append([x[2] for x in data2])
|
||||
# stg.BS_raw_data_reshape.append([x[3] for x in data2])
|
||||
print("np.frombuffer(data2[0][9], dtype=np.float64) ", np.frombuffer(data2[0][9], dtype=np.float64))
|
||||
if len(np.frombuffer(data2[0][9], dtype=np.float64)) == 0:
|
||||
print("Je suis là")
|
||||
stg.time_cross_section.append(np.array([]))
|
||||
stg.depth_cross_section.append(np.array([]))
|
||||
stg.BS_cross_section.append(np.array([]))
|
||||
else:
|
||||
print("Je suis ici")
|
||||
print(stg.freq[j].shape)
|
||||
print(np.frombuffer(data2[0][7], dtype=np.float64).shape)
|
||||
stg.time_cross_section.append(np.frombuffer(data2[0][7], dtype=np.float64).reshape((stg.freq[j].shape[0], -1)))
|
||||
print("time cross section ", stg.time_cross_section, stg.time_cross_section[j].shape)
|
||||
stg.depth_cross_section.append(np.frombuffer(data2[0][8], dtype=np.float64).reshape((stg.freq[j].shape[0], -1)))
|
||||
print("depth cross section ", stg.depth_cross_section, stg.depth_cross_section[j].shape)
|
||||
stg.BS_cross_section.append(np.frombuffer(data2[0][9], dtype=np.float64).reshape(
|
||||
(stg.freq[j].shape[0], stg.depth_cross_section[j].shape[1], stg.time_cross_section[j].shape[1])))
|
||||
|
||||
if len(np.frombuffer(data2[0][10], dtype=np.float64)) == 0:
|
||||
stg.BS_stream_bed.append(np.array([]))
|
||||
else:
|
||||
stg.BS_stream_bed.append(np.frombuffer(data2[0][10], dtype=np.float64).reshape(
|
||||
(stg.freq[j].shape[0], stg.depth_cross_section[j].shape[1], stg.time_cross_section[j].shape[1])))
|
||||
|
||||
if len(np.frombuffer(data2[0][11], dtype=np.float64)) == 0:
|
||||
stg.depth_bottom.append(np.array([]))
|
||||
stg.val_bottom.append([])
|
||||
stg.ind_bottom.append([])
|
||||
else:
|
||||
stg.depth_bottom.append(np.frombuffer(data2[0][11], dtype=np.float64))
|
||||
stg.val_bottom.append(np.frombuffer(data2[0][12], dtype=np.float64).tolist())
|
||||
stg.ind_bottom.append(np.frombuffer(data2[0][13], dtype=np.float64).tolist())
|
||||
print("stg.depth_bottom ", stg.depth_bottom)
|
||||
print("stg.val_bottom ", stg.val_bottom)
|
||||
print("stg.ind_bottom ", stg.ind_bottom)
|
||||
|
||||
if len(np.frombuffer(data2[0][14], dtype=np.float64)) == 0:
|
||||
stg.time_noise.append(np.array([]))
|
||||
stg.depth_noise.append(np.array([]))
|
||||
stg.BS_noise_raw_data.append(np.array([]))
|
||||
else:
|
||||
stg.time_noise.append(np.frombuffer(data2[0][14], dtype=np.float64).reshape((stg.freq[j].shape[0], -1)))
|
||||
stg.depth_noise.append(np.frombuffer(data2[0][15], dtype=np.float64).reshape((stg.freq[j].shape[0], -1)))
|
||||
stg.BS_noise_raw_data.append(np.frombuffer(data2[0][16], dtype=np.float64).reshape(
|
||||
(stg.freq[j].shape[0], stg.depth_noise[j].shape[1], stg.time_noise[j].shape[1])))
|
||||
|
||||
if len(np.frombuffer(data2[0][17], dtype=np.float64)) == 0:
|
||||
stg.SNR_raw_data.append(np.array([]))
|
||||
else:
|
||||
stg.SNR_raw_data.append(np.frombuffer(data2[0][17], dtype=np.float64).reshape(stg.BS_raw_data[j].shape))
|
||||
|
||||
if len(np.frombuffer(data2[0][18], dtype=np.float64)) == 0:
|
||||
stg.SNR_cross_section.append(np.array([]))
|
||||
else:
|
||||
stg.SNR_cross_section.append(np.frombuffer(data2[0][18], dtype=np.float64).reshape(stg.BS_cross_section[j].shape))
|
||||
|
||||
if len(np.frombuffer(data2[0][19], dtype=np.float64)) == 0:
|
||||
stg.SNR_stream_bed.append(np.array([]))
|
||||
else:
|
||||
stg.SNR_stream_bed.append(np.frombuffer(data2[0][19], dtype=np.float64).reshape(stg.BS_stream_bed[j].shape))
|
||||
|
||||
if len(np.frombuffer(data2[0][20], dtype=np.float64)) == 0:
|
||||
stg.BS_raw_data_pre_process_SNR.append(np.array([]))
|
||||
else:
|
||||
stg.BS_raw_data_pre_process_SNR.append(np.frombuffer(data2[0][20], dtype=np.float64).reshape(stg.BS_raw_data[j].shape))
|
||||
|
||||
if len(np.frombuffer(data2[0][21], dtype=np.float64)) == 0:
|
||||
stg.BS_raw_data_pre_process_average.append(np.array([]))
|
||||
else:
|
||||
stg.BS_raw_data_pre_process_average.append(np.frombuffer(data2[0][21], dtype=np.float64).reshape(stg.BS_raw_data[j].shape))
|
||||
|
||||
if len(np.frombuffer(data2[0][22], dtype=np.float64)) == 0:
|
||||
stg.BS_cross_section_pre_process_SNR.append(np.array([]))
|
||||
else:
|
||||
stg.BS_cross_section_pre_process_SNR.append(np.frombuffer(data2[0][22], dtype=np.float64).reshape(stg.BS_cross_section[j].shape))
|
||||
|
||||
if len(np.frombuffer(data2[0][23], dtype=np.float64)) == 0:
|
||||
stg.BS_cross_section_pre_process_average.append(np.array([]))
|
||||
else:
|
||||
stg.BS_cross_section_pre_process_average.append(np.frombuffer(data2[0][23], dtype=np.float64).reshape(stg.BS_cross_section[j].shape))
|
||||
|
||||
if len(np.frombuffer(data2[0][24], dtype=np.float64)) == 0:
|
||||
stg.BS_stream_bed_pre_process_SNR.append(np.array([]))
|
||||
else:
|
||||
stg.BS_stream_bed_pre_process_SNR.append(np.frombuffer(data2[0][24], dtype=np.float64).reshape(stg.BS_stream_bed[j].shape))
|
||||
|
||||
if len(np.frombuffer(data2[0][25], dtype=np.float64)) == 0:
|
||||
stg.BS_stream_bed_pre_process_average.append(np.array([]))
|
||||
else:
|
||||
stg.BS_stream_bed_pre_process_average.append(np.frombuffer(data2[0][25], dtype=np.float64).reshape(stg.BS_stream_bed[j].shape))
|
||||
|
||||
if len(np.frombuffer(data2[0][26], dtype=np.float64)) == 0:
|
||||
stg.BS_mean.append(np.array([]))
|
||||
else:
|
||||
stg.BS_mean.append(np.frombuffer(data2[0][26], dtype=np.float64).reshape((stg.freq[j].shape[0], -1)))
|
||||
print(stg.BS_mean[j].shape)
|
||||
# --------------------------------------------------------------------------------------------------------------
|
||||
# +++++++++++++++++++++++
|
||||
# --- Table Settings ---
|
||||
# +++++++++++++++++++++++
|
||||
|
||||
for s in range(len(stg.acoustic_data)):
|
||||
query3 = f'''SELECT acoustic_data, temperature,
|
||||
tmin_index, tmin_value, tmax_index, tmax_value,
|
||||
rmin_index, rmin_value, rmax_index, rmax_value,
|
||||
freq_bottom_detection_index, freq_bottom_detection_value,
|
||||
SNR_filter_value, Nb_cells_to_average_BS_signal
|
||||
FROM Settings WHERE (acoustic_data = {s})'''
|
||||
|
||||
data3 = cur.execute(query3).fetchall()
|
||||
|
||||
stg.temperature = [x[1] for x in data3][0]
|
||||
stg.tmin.append([(x[2], x[3]) for x in data3])
|
||||
stg.tmax.append([(x[4], x[5]) for x in data3])
|
||||
stg.rmin.append([(x[6], x[7]) for x in data3])
|
||||
stg.rmax.append([(x[8], x[9]) for x in data3])
|
||||
stg.freq_bottom_detection.append([(x[10], x[11]) for x in data3])
|
||||
stg.SNR_filter_value.append([x[12] for x in data3])
|
||||
stg.Nb_cells_to_average_BS_signal.append([x[13] for x in data3])
|
||||
|
||||
# --------------------------------------------------------------------------------------------------------------
|
||||
# +++++++++++++++++++++++++++
|
||||
# --- Table Sediment File ---
|
||||
# +++++++++++++++++++++++++++
|
||||
|
||||
query4 = f'''SELECT path_fine, filename_fine, radius_grain_fine, path_sand, filename_sand, radius_grain_sand,
|
||||
time_column_label, distance_from_bank_column_label, depth_column_label,
|
||||
Ctot_fine_column_label, D50_fine_column_label,
|
||||
Ctot_sand_column_label, D50_sand_column_label
|
||||
from SedimentsFile'''
|
||||
|
||||
data4 = cur.execute(query4).fetchall()
|
||||
|
||||
print("data4 ", data4)
|
||||
|
||||
stg.path_fine = data4[0][0]
|
||||
stg.filename_fine = data4[0][1]
|
||||
stg.radius_grain_fine = np.array(np.frombuffer(data4[0][2], dtype=np.float64))
|
||||
stg.path_sand = data4[0][3]
|
||||
stg.filename_sand = data4[0][4]
|
||||
stg.radius_grain_sand = np.array(np.frombuffer(data4[0][5], dtype=np.float64))
|
||||
stg.columns_fine = [data4[0][6], data4[0][7], data4[0][8], data4[0][9], data4[0][10]] + list(stg.radius_grain_fine)
|
||||
stg.columns_sand = [data4[0][6], data4[0][7], data4[0][8], data4[0][11], data4[0][12]] + list(stg.radius_grain_sand)
|
||||
|
||||
print("sediment file : ", stg.path_fine, stg.filename_fine, stg.path_sand, stg.filename_sand)
|
||||
print(stg.radius_grain_fine, stg.radius_grain_sand)
|
||||
print('stg.columns_fine ', stg.columns_fine)
|
||||
|
||||
# --------------------------------------------------------------------------------------------------------------
|
||||
# +++++++++++++++++++++++++++
|
||||
# --- Table Sediment Data ---
|
||||
# +++++++++++++++++++++++++++
|
||||
|
||||
query5 = f'''SELECT sample_fine_name, sample_fine_index, distance_from_bank_fine, depth_fine, time_fine,
|
||||
Ctot_fine, Ctot_fine_per_cent, D50_fine, frac_vol_fine, frac_vol_fine_cumul,
|
||||
sample_sand_name, sample_sand_index, distance_from_bank_sand, depth_sand, time_sand,
|
||||
Ctot_sand, Ctot_sand_per_cent, D50_sand, frac_vol_sand, frac_vol_sand_cumul
|
||||
from SedimentsData'''
|
||||
|
||||
data5 = cur.execute(query5).fetchall()
|
||||
|
||||
stg.frac_vol_fine = []
|
||||
stg.frac_vol_fine_cumul = []
|
||||
stg.frac_vol_sand = []
|
||||
stg.frac_vol_sand_cumul = []
|
||||
|
||||
for f in range(len(data5)):
|
||||
stg.sample_fine.append((data5[f][0], data5[f][1]))
|
||||
stg.distance_from_bank_fine.append(data5[f][2])
|
||||
stg.depth_fine.append(data5[f][3])
|
||||
stg.time_fine.append(data5[f][4])
|
||||
stg.Ctot_fine.append(data5[f][5])
|
||||
stg.Ctot_fine_per_cent.append(data5[f][6])
|
||||
stg.D50_fine.append(data5[f][7])
|
||||
print("np.frombuffer(data4[f][8], dtype=np.float64) ", np.frombuffer(data5[f][8], dtype=np.float64))
|
||||
stg.frac_vol_fine.append(np.frombuffer(data5[f][8], dtype=np.float64))
|
||||
stg.frac_vol_fine_cumul.append(np.frombuffer(data5[f][9], dtype=np.float64))
|
||||
stg.sample_sand.append((data5[f][10], data5[f][11]))
|
||||
stg.distance_from_bank_sand.append(data5[f][12])
|
||||
stg.depth_sand.append(data5[f][13])
|
||||
stg.time_sand.append(data5[f][14])
|
||||
stg.Ctot_sand.append(data5[f][15])
|
||||
stg.Ctot_sand_per_cent.append(data5[f][16])
|
||||
stg.D50_sand.append(data5[f][17])
|
||||
stg.frac_vol_sand.append(np.frombuffer(data5[f][18], dtype=np.float64))
|
||||
stg.frac_vol_sand_cumul.append(np.frombuffer(data5[f][19], dtype=np.float64))
|
||||
|
||||
stg.frac_vol_fine = np.array(stg.frac_vol_fine)
|
||||
stg.frac_vol_fine_cumul = np.array(stg.frac_vol_fine_cumul)
|
||||
stg.frac_vol_sand = np.array(stg.frac_vol_sand)
|
||||
stg.frac_vol_sand_cumul = np.array(stg.frac_vol_sand_cumul)
|
||||
|
||||
# print("data 4 : ", len(data4), data4)
|
||||
print('data 5 :')
|
||||
print(stg.Ctot_fine, stg.sample_sand)
|
||||
print(type(stg.frac_vol_fine_cumul), stg.frac_vol_fine_cumul)
|
||||
|
||||
# query = '''SELECT acoustic_file FROM File'''
|
||||
# cur.execute(query)
|
||||
# stg.acoustic_data = cur.fetchall()
|
||||
|
||||
# Close database cursor
|
||||
cur.close()
|
||||
@@ -114,6 +372,27 @@ class ReadTableForOpen:
|
||||
# Close database connection
|
||||
cnx.close()
|
||||
|
||||
print("read table finished")
|
||||
|
||||
def fill_acoustic_data_tab(self):
|
||||
print("start fill acoustic data tab")
|
||||
|
||||
# tab_adt = AcousticDataTab(self.master_widget)
|
||||
print("1 AcousticDataTab ", id(AcousticDataTab))
|
||||
print("tab_adt.combobox_ABS_system_choice ", self.tab.combobox_ABS_system_choice)
|
||||
self.tab.combobox_ABS_system_choice.editTextChanged.connect(self.tab.ABS_system_choice)
|
||||
if stg.ABS_name[0] == "AQUAscat":
|
||||
self.tab.combobox_ABS_system_choice.setCurrentText(stg.ABS_name[0])
|
||||
print("combobox_ABS_system_choice.setCurrentIndex(1)", self.tab.combobox_ABS_system_choice.itemText(1),
|
||||
self.tab.combobox_ABS_system_choice.itemText(2))
|
||||
else:
|
||||
self.tab.combobox_ABS_system_choice.setCurrentText(stg.ABS_name[0])
|
||||
|
||||
self.tab.plot_backscattered_acoustic_signal_recording()
|
||||
# app = QApplication(sys.argv)
|
||||
|
||||
# sys.exit(app.exec_())
|
||||
|
||||
def reshape_variables(self):
|
||||
|
||||
for i in stg.acoustic_data:
|
||||
@@ -150,8 +429,3 @@ class ReadTableForOpen:
|
||||
stg.BS_raw_data.append(np.reshape(stg.BS_raw_data_reshape[i],
|
||||
(len(stg.freq[i]), stg.depth[i].shape[1], stg.time[i].shape[1])))
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
|
||||
@@ -161,7 +161,7 @@ def translate_key(raw_key, _type="data"):
|
||||
#if translated_key == None:
|
||||
# print("delete %s"%raw_key)
|
||||
|
||||
print(f"translated_key : {translated_key}")
|
||||
# print(f"translated_key : {translated_key}")
|
||||
return translated_key
|
||||
|
||||
def translate_paramdict(param_dict):
|
||||
|
||||
+105
-25
@@ -1,3 +1,26 @@
|
||||
# ============================================================================== #
|
||||
# update_table_for_save.py - AcouSed #
|
||||
# Copyright (C) 2024 INRAE #
|
||||
# #
|
||||
# This program is free software: you can redistribute it and/or modify #
|
||||
# it under the terms of the GNU General Public License as published by #
|
||||
# the Free Software Foundation, either version 3 of the License, or #
|
||||
# (at your option) any later version. #
|
||||
# #
|
||||
# This program is distributed in the hope that it will be useful, #
|
||||
# but WITHOUT ANY WARRANTY; without even the implied warranty of #
|
||||
# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the #
|
||||
# GNU General Public License for more details. #
|
||||
# #
|
||||
# You should have received a copy of the GNU General Public License #
|
||||
# along with this program. If not, see <https://www.gnu.org/licenses/>. #
|
||||
|
||||
# by Brahim MOUDJED #
|
||||
# ============================================================================== #
|
||||
|
||||
# -*- coding: utf-8 -*-
|
||||
|
||||
|
||||
import numpy as np
|
||||
from PyQt5.QtWidgets import QFileDialog, QApplication, QMessageBox
|
||||
import sqlite3
|
||||
@@ -82,8 +105,11 @@ class UpdateTableForSave:
|
||||
cur.execute("DROP TABLE if exists Measure")
|
||||
|
||||
cur.execute("""CREATE TABLE Measure(ID INTEGER PRIMARY KEY AUTOINCREMENT,
|
||||
acoustic_data INTEGER,
|
||||
frequency FLOAT,
|
||||
acoustic_data INTEGER,
|
||||
Date STRING,
|
||||
Hour STRING,
|
||||
frequency FLOAT,
|
||||
sound_attenuation FLOAT,
|
||||
kt_read FLOAT,
|
||||
kt_corrected FLOAT,
|
||||
NbProfiles FLOAT,
|
||||
@@ -94,21 +120,26 @@ class UpdateTableForSave:
|
||||
NbPingsPerSeconds FLOAT,
|
||||
NbPingsAveragedPerProfile FLOAT,
|
||||
GainRx FLOAT,
|
||||
GainTx FLOAT)
|
||||
GainTx FLOAT
|
||||
)
|
||||
""")
|
||||
|
||||
# Fill the table Measure
|
||||
for i in stg.acoustic_data:
|
||||
|
||||
for j in range(stg.freq[i].shape[0]):
|
||||
cur.execute(''' INSERT into Measure(acoustic_data, frequency, kt_read, kt_corrected, NbProfiles,
|
||||
cur.execute(''' INSERT into Measure(acoustic_data, Date, Hour, frequency, sound_attenuation, kt_read, kt_corrected, NbProfiles,
|
||||
NbProfilesPerSeconds, NbCells, CellSize, PulseLength,
|
||||
NbPingsPerSeconds, NbPingsAveragedPerProfile, GainRx, GainTx)
|
||||
VALUES(?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)''',
|
||||
(stg.acoustic_data[i], stg.freq[i][j], stg.kt_read[j], stg.kt_corrected[j],
|
||||
NbPingsPerSeconds, NbPingsAveragedPerProfile, GainRx, GainTx,
|
||||
)
|
||||
VALUES(?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)''',
|
||||
(stg.acoustic_data[i], stg.freq[i][j], stg.water_attenuation[i][j], stg.kt_read[j], stg.kt_corrected[j],
|
||||
stg.nb_profiles[i][j], stg.nb_profiles_per_sec[i][j], stg.nb_cells[i][j],
|
||||
stg.cell_size[i][j], stg.pulse_length[i][j], stg.nb_pings_per_sec[i][j],
|
||||
stg.nb_pings_averaged_per_profile[i][j], stg.gain_rx[i][j], stg.gain_tx[i][j]))
|
||||
stg.nb_pings_averaged_per_profile[i][j], stg.gain_rx[i][j], stg.gain_tx[i][j],
|
||||
str(stg.date[i].year) + str('-') + str(stg.date[i].month) + str('-') + str(stg.date[i].day),
|
||||
str(stg.hour[i].hour) + str(':') + str(stg.hour[i].minute)
|
||||
))
|
||||
|
||||
# Commit the transaction after executing INSERT.
|
||||
cnx.commit()
|
||||
@@ -126,30 +157,38 @@ class UpdateTableForSave:
|
||||
|
||||
cur.execute('''CREATE TABLE BSRawData(ID INTEGER PRIMARY KEY AUTOINCREMENT,
|
||||
acoustic_data INTEGER,
|
||||
time BLOB, depth BLOB, BS_raw_data BLOB,
|
||||
time BLOB, depth BLOB, BS_raw_data BLOB,
|
||||
time_reshape BLOB, depth_reshape BLOB, BS_raw_data_reshape BLOB,
|
||||
time_cross_section BLOB, depth_cross_section BLOB, BS_cross_section BLOB, BS_stream_bed BLOB,
|
||||
depth_bottom, val_bottom, ind_bottom,
|
||||
time_noise BLOB, depth_noise BLOB, BS_noise_raw_data BLOB,
|
||||
SNR_raw_data BLOB, SNR_cross_section BLOB, SNR_stream_bed BLOB,
|
||||
BS_raw_data_pre_process_SNR BLOB, BS_raw_data_pre_process_average BLOB,
|
||||
BS_cross_section_pre_process_SNR BLOB, BS_cross_section_pre_process_average BLOB,
|
||||
BS_stream_bed_pre_process_SNR BLOB, BS_stream_bed_pre_process_average BLOB
|
||||
BS_stream_bed_pre_process_SNR BLOB, BS_stream_bed_pre_process_average BLOB,
|
||||
BS_mean BLOB
|
||||
)''')
|
||||
|
||||
for i in stg.acoustic_data:
|
||||
|
||||
cur.execute(''' INSERT into BSRawData(acoustic_data, time, depth, BS_raw_data,
|
||||
time_reshape, depth_reshape, BS_raw_data_reshape,
|
||||
time_cross_section, depth_cross_section,
|
||||
BS_cross_section, BS_stream_bed,
|
||||
depth_bottom, val_bottom, ind_bottom,
|
||||
time_noise, depth_noise, BS_noise_raw_data,
|
||||
SNR_raw_data, SNR_cross_section, SNR_stream_bed,
|
||||
BS_raw_data_pre_process_SNR, BS_raw_data_pre_process_average,
|
||||
BS_cross_section_pre_process_SNR, BS_cross_section_pre_process_average,
|
||||
BS_stream_bed_pre_process_SNR, BS_stream_bed_pre_process_average)
|
||||
VALUES(?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)''',
|
||||
BS_stream_bed_pre_process_SNR, BS_stream_bed_pre_process_average,
|
||||
BS_mean)
|
||||
VALUES(?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)''',
|
||||
(stg.acoustic_data[i], stg.time[i].tobytes(), stg.depth[i].tobytes(), stg.BS_raw_data[i].tobytes(),
|
||||
stg.time_reshape[i].tobytes(), stg.depth_reshape[i].tobytes(), stg.BS_raw_data_reshape[i].tobytes(),
|
||||
stg.time_cross_section[i].tobytes(), stg.depth_cross_section[i].tobytes(), stg.BS_cross_section[i].tobytes(),
|
||||
stg.BS_stream_bed[i].tobytes(), stg.time_noise[i].tobytes(), stg.depth_noise[i].tobytes(),
|
||||
stg.BS_stream_bed[i].tobytes(),
|
||||
stg.depth_bottom[i].tobytes(), stg.val_bottom[i].tobytes(), np.array(stg.ind_bottom[i]).tobytes(),
|
||||
stg.time_noise[i].tobytes(), stg.depth_noise[i].tobytes(),
|
||||
stg.BS_noise_raw_data[i].tobytes(),
|
||||
stg.SNR_raw_data[i].tobytes(), stg.SNR_cross_section[i].tobytes(),
|
||||
stg.SNR_stream_bed[i].tobytes(),
|
||||
@@ -158,7 +197,8 @@ class UpdateTableForSave:
|
||||
stg.BS_cross_section_pre_process_SNR[i].tobytes(),
|
||||
stg.BS_cross_section_pre_process_average[i].tobytes(),
|
||||
stg.BS_stream_bed_pre_process_SNR[i].tobytes(),
|
||||
stg.BS_stream_bed_pre_process_average[i].tobytes()
|
||||
stg.BS_stream_bed_pre_process_average[i].tobytes(),
|
||||
stg.BS_mean[i].tobytes()
|
||||
)
|
||||
)
|
||||
|
||||
@@ -180,7 +220,7 @@ class UpdateTableForSave:
|
||||
temperature FLOAT,
|
||||
tmin_index FLOAT, tmin_value FLOAT, tmax_index FLOAT, tmax_value FLOAT,
|
||||
rmin_index FLOAT, rmin_value FLOAT, rmax_index FLOAT, rmax_value FLOAT,
|
||||
freq_bottom_detection, dept_bottom_detection_min, depth_bottom_detection_max, depth_bottom_detection_1st_int_area,
|
||||
freq_bottom_detection_index FLOAT, freq_bottom_detection_value STRING,
|
||||
SNR_filter_value FLOAT, Nb_cells_to_average_BS_signal FLOAT
|
||||
)'''
|
||||
)
|
||||
@@ -189,11 +229,13 @@ class UpdateTableForSave:
|
||||
cur.execute('''INSERT into Settings(acoustic_data, temperature,
|
||||
tmin_index, tmin_value, tmax_index, tmax_value,
|
||||
rmin_index, rmin_value, rmax_index, rmax_value,
|
||||
freq_bottom_detection_index, freq_bottom_detection_value,
|
||||
SNR_filter_value, Nb_cells_to_average_BS_signal)
|
||||
VALUES(?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)''',
|
||||
VALUES(?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)''',
|
||||
(stg.acoustic_data[i], stg.temperature,
|
||||
stg.tmin[i][0], stg.tmin[i][1], stg.tmax[i][0], stg.tmax[i][1],
|
||||
stg.rmin[i][0], stg.rmin[i][1], stg.rmax[i][0], stg.rmax[i][1],
|
||||
stg.freq_bottom_detection[i][0], stg.freq_bottom_detection[i][1],
|
||||
stg.SNR_filter_value[i], stg.Nb_cells_to_average_BS_signal[i])
|
||||
)
|
||||
|
||||
@@ -211,13 +253,33 @@ class UpdateTableForSave:
|
||||
cur.execute("DROP TABLE if exists SedimentsFile")
|
||||
|
||||
cur.execute("""CREATE TABLE SedimentsFile(ID INTEGER PRIMARY KEY AUTOINCREMENT,
|
||||
path_fine STRING,
|
||||
filename_fine STRING
|
||||
)"""
|
||||
path_fine STRING,
|
||||
filename_fine STRING,
|
||||
radius_grain_fine BLOB,
|
||||
path_sand STRING,
|
||||
filename_sand STRING,
|
||||
radius_grain_sand BLOB,
|
||||
time_column_label STRING,
|
||||
distance_from_bank_column_label STRING,
|
||||
depth_column_label STRING,
|
||||
Ctot_fine_column_label STRING,
|
||||
D50_fine_column_label STRING,
|
||||
Ctot_sand_column_label STRING,
|
||||
D50_sand_column_label STRING
|
||||
)"""
|
||||
)
|
||||
|
||||
cur.execute('''INSERT into SedimentsFile(path_fine, filename_fine) VALUES(?, ?)''',
|
||||
(stg.path_fine, stg.filename_fine))
|
||||
cur.execute('''INSERT into SedimentsFile(path_fine, filename_fine, radius_grain_fine,
|
||||
path_sand, filename_sand, radius_grain_sand,
|
||||
time_column_label, distance_from_bank_column_label,
|
||||
depth_column_label, Ctot_fine_column_label,
|
||||
D50_fine_column_label, Ctot_sand_column_label,
|
||||
D50_sand_column_label)
|
||||
VALUES(?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)''',
|
||||
(stg.path_fine, stg.filename_fine, stg.radius_grain_fine.tobytes(),
|
||||
stg.path_sand, stg.filename_sand, stg.radius_grain_sand.tobytes(),
|
||||
stg.columns_fine[0], stg.columns_fine[1], stg.columns_fine[2],
|
||||
stg.columns_fine[3], stg.columns_fine[4], stg.columns_sand[3], stg.columns_sand[4]))
|
||||
|
||||
cnx.commit()
|
||||
|
||||
@@ -242,19 +304,37 @@ class UpdateTableForSave:
|
||||
Ctot_fine_per_cent FLOAT,
|
||||
D50_fine FLOAT,
|
||||
frac_vol_fine BLOB,
|
||||
frac_vol_fine_cumul BLOB
|
||||
frac_vol_fine_cumul BLOB,
|
||||
sample_sand_name STRING,
|
||||
sample_sand_index INTEGER,
|
||||
distance_from_bank_sand FLOAT,
|
||||
depth_sand FLOAT,
|
||||
time_sand FLOAT,
|
||||
Ctot_sand FLOAT,
|
||||
Ctot_sand_per_cent FLOAT,
|
||||
D50_sand FLOAT,
|
||||
frac_vol_sand BLOB,
|
||||
frac_vol_sand_cumul BLOB
|
||||
)"""
|
||||
)
|
||||
|
||||
for f in range(len(stg.sample_fine)):
|
||||
cur.execute('''INSERT into SedimentsData(sample_fine_name, sample_fine_index, distance_from_bank_fine,
|
||||
depth_fine, time_fine, Ctot_fine, Ctot_fine_per_cent, D50_fine, frac_vol_fine,
|
||||
frac_vol_fine_cumul)
|
||||
VALUES(?, ?, ?, ?, ?, ?, ?, ?, ?, ?)''',
|
||||
frac_vol_fine_cumul,
|
||||
sample_sand_name, sample_sand_index, distance_from_bank_sand,
|
||||
depth_sand, time_sand, Ctot_sand, Ctot_sand_per_cent, D50_sand, frac_vol_sand,
|
||||
frac_vol_sand_cumul)
|
||||
VALUES(?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?, ?)''',
|
||||
(stg.sample_fine[f][0], stg.sample_fine[f][1],
|
||||
stg.distance_from_bank_fine[f], stg.depth_fine[f], stg.time_fine[f], stg.Ctot_fine[f],
|
||||
stg.Ctot_fine_per_cent[f], stg.D50_fine[f],
|
||||
stg.frac_vol_fine[f].tobytes(), stg.frac_vol_fine_cumul[f].tobytes()))
|
||||
stg.frac_vol_fine[f].tobytes(), stg.frac_vol_fine_cumul[f].tobytes(),
|
||||
stg.sample_sand[f][0], stg.sample_sand[f][1],
|
||||
stg.distance_from_bank_sand[f], stg.depth_sand[f], stg.time_sand[f], stg.Ctot_sand[f],
|
||||
stg.Ctot_sand_per_cent[f], stg.D50_sand[f],
|
||||
stg.frac_vol_sand[f].tobytes(), stg.frac_vol_sand_cumul[f].tobytes()
|
||||
))
|
||||
|
||||
cnx.commit()
|
||||
|
||||
|
||||
Reference in new issue
Block a user