Sediment calibration: Some refactoring.
parent
4a8b318ea4
commit
fbda28eb86
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@ -2149,35 +2149,46 @@ class SedimentCalibrationTab(QWidget):
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self.lineEdit_zeta_freq2.setText(str("%.5f" % zeta_freq2))
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def save_calibration(self):
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data_id = self.combobox_acoustic_data_choice.currentIndex()
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freq1 = stg.frequencies_for_calibration[0][1]
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freq2 = stg.frequencies_for_calibration[1][1]
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if stg.alpha_s:
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directory = ""
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if stg.path_calibration_file != "":
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directory = stg.path_calibration_file
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elif self.combobox_acoustic_data_choice.count() > 0:
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directory = stg.path_BS_raw_data[-1]
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dir_save_cal = QFileDialog.getExistingDirectory(
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caption="Save calibration",
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directory=[stg.path_calibration_file if stg.path_calibration_file else stg.path_BS_raw_data[-1] if self.combobox_acoustic_data_choice.count() > 0 else ""][0],
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options=QFileDialog.DontUseNativeDialog)
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directory=directory,
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options=QFileDialog.DontUseNativeDialog
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)
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if dir_save_cal:
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stg.path_calibration_file = os.path.dirname(dir_save_cal)
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cal_array = [[' ', stg.freq_text[self.combobox_acoustic_data_choice.currentIndex()][stg.frequencies_for_calibration[0][1]],
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stg.freq_text[self.combobox_acoustic_data_choice.currentIndex()][stg.frequencies_for_calibration[1][1]]],
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['ks', stg.ks[0], stg.ks[1]],
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['sv', stg.sv[0], stg.sv[1]],
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['X', stg.X_exponent[0], 0],
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['alphas', stg.alpha_s[0], stg.alpha_s[1]],
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['zeta', stg.zeta[0], stg.zeta[1]]]
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eval("np.savetxt('"+ dir_save_cal + "/Sediment_calibration_" +
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str(stg.filename_BS_raw_data[self.combobox_acoustic_data_choice.currentIndex()][:-4]) + ".csv' ," +
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"cal_array, " +
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"delimiter=',' ," +
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"fmt ='% s'" +
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")")
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cal_array = [
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[
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' ', stg.freq_text[data_id][freq1],
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stg.freq_text[data_id][freq2]
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],
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['ks', stg.ks[0], stg.ks[1]],
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['sv', stg.sv[0], stg.sv[1]],
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['X', stg.X_exponent[0], 0],
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['alphas', stg.alpha_s[0], stg.alpha_s[1]],
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['zeta', stg.zeta[0], stg.zeta[1]]
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]
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np.savetxt(
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f"{dir_save_cal}/Sediment_calibration_"
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+ f"{stg.filename_BS_raw_data[data_id][:-4]}.csv",
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cal_array,
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delimiter=',', fmt ='% s'
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)
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else:
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msgBox = QMessageBox()
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msgBox.setWindowTitle("Save Error")
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msgBox.setIcon(QMessageBox.Warning)
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@ -2190,68 +2201,49 @@ class SedimentCalibrationTab(QWidget):
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# ------------ Computing real cell size ------------ #
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def range_cells_function(self):
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""" Computing the real cell size, that depends on the temperature """
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data_id = self.combobox_acoustic_data_choice.currentIndex()
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if stg.depth_cross_section[self.combobox_acoustic_data_choice.currentIndex()].shape != (0,):
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aquascat_cell_size = []
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tau = []
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real_cell_size = []
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stg.depth_real = np.zeros(stg.depth_cross_section[self.combobox_acoustic_data_choice.currentIndex()].shape)
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for f in range(stg.freq[self.combobox_acoustic_data_choice.currentIndex()].shape[0]):
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# defaut Aquascat cell size
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aquascat_cell_size.append(
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stg.depth_cross_section[self.combobox_acoustic_data_choice.currentIndex()][f, 1] -
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stg.depth_cross_section[self.combobox_acoustic_data_choice.currentIndex()][f, 0])
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# Pulse duration
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tau.append(aquascat_cell_size[f] * 2 / 1500) # figure 2.9 1500 vitesse du son entrée pour le paramètrage des mesures aquascat
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# Real cell size
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real_cell_size.append(stg.water_velocity * tau[f] / 2) # voir fig 2.9
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# Converting to real cell profile
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stg.depth_real[f, :] = (stg.depth_cross_section[self.combobox_acoustic_data_choice.currentIndex()][f, :]
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/ aquascat_cell_size[f] * real_cell_size[f])
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aquascat_cell_size = []
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tau = []
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real_cell_size = []
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if stg.depth_cross_section[data_id].shape != (0,):
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depth_data = stg.depth_cross_section
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else:
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depth_data = stg.depth
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aquascat_cell_size = []
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tau = []
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real_cell_size = []
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stg.depth_real = np.zeros(depth_data[data_id].shape)
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stg.depth_real = (np.zeros(stg.depth[self.combobox_acoustic_data_choice.currentIndex()].shape))
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for f in range(stg.freq[data_id].shape[0]):
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# defaut Aquascat cell size
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aquascat_cell_size.append(
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depth_data[data_id][f, 1] - depth_data[data_id][f, 0]
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)
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for f in range(stg.freq[self.combobox_acoustic_data_choice.currentIndex()].shape[0]):
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# Pulse duration: figure 2.9 1500 vitesse du son entrée
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# pour le paramètrage des mesures aquascat
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tau.append(aquascat_cell_size[f] * 2 / 1500)
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# defaut Aquascat cell size
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aquascat_cell_size.append(
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stg.depth[self.combobox_acoustic_data_choice.currentIndex()][f, 1] -
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stg.depth[self.combobox_acoustic_data_choice.currentIndex()][f, 0])
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# voir fig 2.9
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real_cell_size.append(stg.water_velocity * tau[f] / 2)
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# Pulse duration
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tau.append(aquascat_cell_size[f] * 2 / 1500) # figure 2.9 1500 vitesse du son entrée pour le paramètrage des mesures aquascat
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# Converting to real cell profile
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stg.depth_real[f, :] = (
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depth_data[data_id][f, :]
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/ aquascat_cell_size[f]
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* real_cell_size[f]
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)
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# Real cell size
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real_cell_size.append(stg.water_velocity * tau[f] / 2) # voir fig 2.9
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# Converting to real cell profile
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stg.depth_real[f, :] = (stg.depth[self.combobox_acoustic_data_choice.currentIndex()][f, :] /
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aquascat_cell_size[f] * real_cell_size[f])
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if stg.time_cross_section[self.combobox_acoustic_data_choice.currentIndex()].shape != (0,):
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stg.depth_real = \
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(np.repeat(stg.depth_real[:, :, np.newaxis],
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stg.time_cross_section[self.combobox_acoustic_data_choice.currentIndex()].shape[1], axis=2))
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if stg.time_cross_section[data_id].shape != (0,):
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time_data = stg.time_cross_section
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else:
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time_data = stg.time
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stg.depth_real = (
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np.repeat(stg.depth_real[:, :, np.newaxis],
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stg.time[self.combobox_acoustic_data_choice.currentIndex()].shape[1], axis=2))
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stg.depth_real = np.repeat(
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stg.depth_real[:, :, np.newaxis],
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time_data[data_id].shape[1], axis=2
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)
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def compute_FCB(self):
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data_id = self.combobox_acoustic_data_choice.currentIndex()
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