Model/read_table_for_open.py

@@ -560,6 +560,7 @@ class ReadTableForOpen:
             + list(stg.radius_grain_sand)
         )
 
+    @trace
     def read_table_table_sediment_data(self):
         np_f64_parse = lambda d: np.frombuffer(d, dtype=np.float64)
 
@@ -617,6 +618,7 @@ class ReadTableForOpen:
 
         logger.debug(f"fine: {stg.Ctot_fine}, sand: {stg.sample_sand}")
 
+    @trace
     def read_table_table_calibration_parameters(self):
         np_f64_parse = lambda d: np.frombuffer(d, dtype=np.float64)
 
@@ -679,6 +681,7 @@ class ReadTableForOpen:
                 )
             )
 
+    @trace
     def read_table_table_calibration(self):
         np_f64_parse = lambda d: np.frombuffer(d, dtype=np.float64)
 
@@ -711,6 +714,7 @@ class ReadTableForOpen:
         stg.depth_real = np_f64_parse(next(it)).tolist()
         stg.lin_reg = np_f64_parse(next(it)).tolist()
 
+    @trace
     def read_table_table_notes(self):
         np_f64_parse = lambda d: np.frombuffer(d, dtype=np.float64)
 

View/acoustic_data_tab.py

@@ -81,7 +81,6 @@ class AcousticDataTab(QWidget):
         super().__init__()
 
         self._setup_icons()
-        self._setup_attrs()
 
         self.calib_kt = CalibrationConstantKt()
 
@@ -732,12 +731,10 @@ class AcousticDataTab(QWidget):
         self.icon_between = QPixmap(path_icon("between.png"))
         self.icon_refresh = QIcon(path_icon("update.png"))
 
-    def _setup_attrs(self):
-        self.fig_profile = None
-        self.fig_BS = None
 
     # -------------------- Functions for Acoustic dataTab --------------------
 
+    @trace
     def full_update(self):
         logger.debug(f"{__name__}: Update")
         self.blockSignals(True)
@@ -1396,7 +1393,6 @@ class AcousticDataTab(QWidget):
 
             self.open_acoustic_data()
 
-    @trace
     def open_acoustic_data(self):
         # --- Fill lineEdit with path and file names + load acoustic data ---
         # --- fill date, hour and measurements information + fill frequency combobox for bottom detection ---
@@ -2383,9 +2379,6 @@ class AcousticDataTab(QWidget):
         layout.removeWidget(self.toolbar_BS)
         layout.removeWidget(self.scroll_BS)
 
-        if self.fig_BS is not None:
-            self.fig_BS.clear()
-
         self.fig_BS, self.axis_BS = plt.subplots(
             nrows=stg.freq[file_id].shape[0],
             ncols=1, sharex=False, sharey=False,
@@ -2472,9 +2465,6 @@ class AcousticDataTab(QWidget):
             return
 
         if len(self.axis_BS.tolist()) != stg.freq[data_id].shape[0]:
-            if self.fig_BS is not None:
-                self.fig_BS.clear()
-
             self.fig_BS, self.axis_BS = plt.subplots(
                 nrows=stg.freq[data_id].shape[0],
                 ncols=1,
@@ -2563,9 +2553,6 @@ class AcousticDataTab(QWidget):
             self.verticalLayout_groupbox_plot_profile.removeWidget(self.canvas_plot_profile)
 
             # --- Figure to plot profiles ---
-            if self.fig_profile is not None:
-                self.fig_profile.clear()
-
             self.fig_profile, self.axis_profile = plt.subplots(nrows=1, ncols=1, layout="constrained")
             self.canvas_plot_profile = FigureCanvas(self.fig_profile)
             self.toolbar_profile = NavigationToolBar(self.canvas_plot_profile, self)
@@ -2880,9 +2867,10 @@ class AcousticDataTab(QWidget):
                     break
             else:
                 ind_bottom = np.where(
-                    (BS_smooth[ind_min:ind_max, d]) == val_bottom[d]
+                    (BS_smooth[ind_min:ind_max, d])
+                    == val_bottom[d]
                 )[0][0]
-                # np.append(stg.ind_bottom, ind_bottom)
+                np.append(stg.ind_bottom, ind_bottom)
 
                 r_bottom[d] = depth_data[data_id][
                     freq_id, ind_bottom + ind_min

View/acoustic_inversion_tab.py

@@ -64,7 +64,6 @@ class AcousticInversionTab(QWidget):
         self.inv_hc = AcousticInversionMethodHighConcentration()
 
         self._setup_icons()
-        self._setup_attrs()
         self._setup_general_layout(widget_tab)
         self._setup_connections()
 
@@ -445,14 +444,7 @@ class AcousticInversionTab(QWidget):
         self.pushbutton_plot_sand_sample_choice\
             .clicked.connect(self.plot_measured_vs_inverted_SSC_sand)
 
-    def _setup_attrs(self):
-        self.figure_SSC_fine = None
-        self.figure_SSC_sand = None
-        self.figure_vertical_profile_SSC_fine = None
-        self.figure_vertical_profile_SSC_sand = None
-        self.figure_measured_vs_inverted_fine = None
-        self.figure_measured_vs_inverted_sand = None
-
+    @trace
     def full_update(self):
         logger.debug(f"{__name__}: Update")
         self.blockSignals(True)
@@ -593,9 +585,6 @@ class AcousticInversionTab(QWidget):
             self.verticalLayout_groupbox_plot_SSC_fine.removeWidget(self.toolbar_SSC_fine)
             self.verticalLayout_groupbox_plot_SSC_fine.removeWidget(self.canvas_SSC_fine)
 
-            if self.figure_SSC_fine is not None:
-                self.figure_SSC_fine.clear()
-
             self.figure_SSC_fine, self.axis_SSC_fine = plt.subplots(
                 nrows=1, ncols=1, layout="constrained"
             )
@@ -721,9 +710,6 @@ class AcousticInversionTab(QWidget):
             self.verticalLayout_groupbox_plot_vertical_profile_fine\
                 .removeWidget(self.canvas_profile_fine)
 
-            if self.figure_vertical_profile_SSC_fine is not None:
-                self.figure_vertical_profile_SSC_fine.clear()
-
             fig, ax = plt.subplots(nrows=1, ncols=1, layout="constrained")
             self.figure_vertical_profile_SSC_fine = fig
             self.axis_vertical_profile_SSC_fine = ax
@@ -1004,9 +990,6 @@ class AcousticInversionTab(QWidget):
                 self.canvas_inverted_vs_measured_SSC_fine, self
             )
         else:
-            if self.figure_measured_vs_inverted_fine is not None:
-                self.figure_measured_vs_inverted_fine.clear()
-
             fig, ax = plt.subplots(nrows=1, ncols=1, layout="constrained")
 
             self.figure_measured_vs_inverted_fine = fig
@@ -1147,9 +1130,6 @@ class AcousticInversionTab(QWidget):
             self.canvas_SSC_sand = FigureCanvas()
             self.toolbar_SSC_sand = NavigationToolBar(self.canvas_SSC_sand, self)
         else:
-            if self.figure_SSC_sand is not None:
-                self.figure_SSC_sand.clear()
-
             self.figure_SSC_sand, self.axis_SSC_sand = plt.subplots(
                 nrows=1, ncols=1, layout="constrained"
             )
@@ -1274,14 +1254,8 @@ class AcousticInversionTab(QWidget):
                 self.verticalLayout_groupbox_plot_vertical_profile_sand.removeWidget(self.toolbar_profile_sand)
                 self.verticalLayout_groupbox_plot_vertical_profile_sand.removeWidget(self.canvas_profile_sand)
 
-                if self.figure_vertical_profile_SSC_sand is not None:
-                    self.figure_vertical_profile_SSC_sand.clear()
-
-                fig, ax = plt.subplots(
-                    nrows=1, ncols=1, layout="constrained"
-                )
-                self.figure_vertical_profile_SSC_sand = fig
-                self.axis_vertical_profile_SSC_sand = ax
+                self.figure_vertical_profile_SSC_sand, self.axis_vertical_profile_SSC_sand = plt.subplots(
+                    nrows=1, ncols=1, layout="constrained")
 
                 self.canvas_profile_sand = FigureCanvas(self.figure_vertical_profile_SSC_sand)
                 self.toolbar_profile_sand = NavigationToolBar(self.canvas_profile_sand, self)
@@ -1646,13 +1620,8 @@ class AcousticInversionTab(QWidget):
                 self.verticalLayout_groupbox_plot_measured_vs_inverted_SSC_sand.removeWidget(
                     self.canvas_inverted_vs_measured_SSC_sand)
 
-                if self.figure_measured_vs_inverted_sand is not None:
-                    self.figure_measured_vs_inverted_sand.clear()
-
-                fig, ax = plt.subplots(nrows=1, ncols=1, layout="constrained")
-                self.figure_measured_vs_inverted_sand = fig
-                self.axis_measured_vs_inverted_sand = ax
-
+                self.figure_measured_vs_inverted_sand, self.axis_measured_vs_inverted_sand = (
+                    plt.subplots(nrows=1, ncols=1, layout="constrained"))
 
                 self.canvas_inverted_vs_measured_SSC_sand = FigureCanvas(self.figure_measured_vs_inverted_sand)
                 self.toolbar_inverted_vs_measured_SSC_sand = NavigationToolBar(self.canvas_inverted_vs_measured_SSC_sand, self)

View/note_tab.py

@@ -153,6 +153,7 @@ class NoteTab(QWidget):
     ## ---------- Functions ----------
     ## -------------------------------
 
+    @trace
     def full_update(self):
         self.blockSignals(True)
         self.textEdit.blockSignals(True)

View/sample_data_tab.py

@@ -64,7 +64,6 @@ class SampleDataTab(QWidget):
         super().__init__()
 
         icon_folder = QIcon(os.path.join("icons", "folder.png"))
-        self._setup_attrs()
 
         ### --- General layout of widgets ---
 
@@ -258,11 +257,6 @@ class SampleDataTab(QWidget):
 
         self.combobox_PSD_plot.currentTextChanged.connect(self.plot_PSD_fine_and_sand_sediments)
 
-    def _setup_attrs(self):
-        self.figure_plot_sample_position_on_transect = None
-        self.figure_total_concentration = None
-        self.figure_plot_PSD = None
-
     # -------------------- Functions for Sample Data Tab --------------------
 
     def retranslate_data_sample_tab(self):
@@ -286,6 +280,7 @@ class SampleDataTab(QWidget):
 
         self.groupbox_plot_PSD.setTitle(_translate("CONSTANT_STRING", cs.DISTRIBUTION_PLOT))
 
+    @trace
     def full_update(self):
         logger.debug(f"{__name__}: Update")
         self.blockSignals(True)
@@ -795,9 +790,6 @@ class SampleDataTab(QWidget):
         self.verticalLayout_groupbox_plot_transect\
             .removeWidget(self.canvas_plot_sample_position_on_transect)
 
-        if self.figure_plot_sample_position_on_transect is not None:
-            self.figure_plot_sample_position_on_transect.clear()
-
         fig, axis = plt.subplots(nrows=1, ncols=1, layout="constrained")
 
         self.figure_plot_sample_position_on_transect = fig
@@ -1423,9 +1415,6 @@ class SampleDataTab(QWidget):
             self.verticalLayout_groupbox_plot_total_concentration.removeWidget(self.canvas_plot_total_concentration)
             self.verticalLayout_groupbox_plot_total_concentration.removeWidget(self.toolbar_plot_total_concentration)
 
-            if self.figure_total_concentration is not None:
-                self.figure_total_concentration.clear()
-
             self.figure_total_concentration, self.axis_total_concentration \
                 = plt.subplots(nrows=1, ncols=1, layout="constrained")
             self.canvas_plot_total_concentration = FigureCanvas(self.figure_total_concentration)
@@ -1711,9 +1700,6 @@ class SampleDataTab(QWidget):
             self.verticalLayout_groupbox_plot_PSD.removeWidget(self.canvas_plot_PSD)
             self.verticalLayout_groupbox_plot_PSD.removeWidget(self.toolbar_plot_PSD)
 
-            if self.figure_plot_PSD is not None:
-                self.figure_plot_PSD.clear()
-
             self.figure_plot_PSD, self.axis_plot_PSD \
                 = plt.subplots(nrows=1, ncols=2, layout="constrained")
             self.canvas_plot_PSD = FigureCanvas(self.figure_plot_PSD)

View/sediment_calibration_tab.py

@@ -63,7 +63,6 @@ class SedimentCalibrationTab(QWidget):
         self.inv_hc = AcousticInversionMethodHighConcentration()
 
         self._setup_icons()
-        self._setup_attrs()
         self._setup_widgets()
 
     def _path_icon(self, icon):
@@ -85,10 +84,6 @@ class SedimentCalibrationTab(QWidget):
         self.icon_approved = QIcon(self._path_icon("approved.png"))
         self.icon_no_approved = QIcon(self._path_icon("no_approved.png"))
 
-    def _setup_attrs(self):
-        self.fig_BS = None
-        self.fig_Mfine = None
-        self.fig_FCB = None
 
     def _setup_widgets(self):
         self.verticalLayoutMain = QVBoxLayout(self._widget_tab)
@@ -864,6 +859,7 @@ class SedimentCalibrationTab(QWidget):
                 self.fit_FCB_profile_with_linear_regression_and_compute_alphaS
             )
 
+    @trace
     def full_update(self):
         logger.debug(f"{__name__}: Update")
         self.blockSignals(True)
@@ -1034,10 +1030,6 @@ class SedimentCalibrationTab(QWidget):
         # --- Plot acoustic data recording ---
         self.verticalLayout_groupbox_data_plot.removeWidget(self.toolbar_BS)
         self.verticalLayout_groupbox_data_plot.removeWidget(self.canvas_BS)
-
-        if self.fig_BS is not None:
-            self.fig_BS.clear()
-
         self.fig_BS, self.axis_BS = plt.subplots(
             nrows=1, ncols=1, sharex=True, sharey=False,
             layout='constrained'
@@ -1401,10 +1393,6 @@ class SedimentCalibrationTab(QWidget):
         # --- Plot profile of the concentration of the fine sediments ---
         self.verticalLayout_groupbox_interpolate_plot.removeWidget(self.canvas_Mfine)
         self.verticalLayout_groupbox_interpolate_plot.removeWidget(self.toolbar_Mfine)
-
-        if self.fig_Mfine is not None:
-            self.fig_Mfine.clear()
-
         self.fig_Mfine, self.ax_Mfine = plt.subplots(1, 1, layout="constrained")
         self.canvas_Mfine = FigureCanvas(self.fig_Mfine)
         self.toolbar_Mfine = NavigationToolBar(self.canvas_Mfine, self)
@@ -2338,9 +2326,6 @@ class SedimentCalibrationTab(QWidget):
         self.verticalLayout_groupbox_FCB_plot.removeWidget(self.canvas_FCB)
         self.verticalLayout_groupbox_FCB_plot.removeWidget(self.toolbar_FCB)
 
-        if self.fig_FCB is not None:
-            self.fig_FCB.clear()
-
         self.fig_FCB, self.axis_FCB = plt.subplots(
             nrows=1, ncols=1, layout="constrained"
         )

View/signal_processing_tab.py

@@ -75,7 +75,6 @@ class SignalProcessingTab(QWidget):
 
 
         self._setup_icons()
-        self._setup_attrs()
 
         ### --- General layout of widgets ---
 
@@ -512,13 +511,7 @@ class SignalProcessingTab(QWidget):
         self.icon_clear = QIcon(path_icon("clear.png"))
         self.icon_apply = QIcon(path_icon("circle_green_arrow_right.png"))
 
-    def _setup_attrs(self):
-        self.fig_profile_tail = None
-        self.fig_noise = None
-        self.fig_SNR = None
-        self.fig_BS = None
-        self.figure_profile = None
-
+    @trace
     def full_update(self):
         logger.debug(f"{__name__}: Update")
         self.blockSignals(True)
@@ -790,63 +783,46 @@ class SignalProcessingTab(QWidget):
             msgBox.exec()
 
         else:
-            data_id = self.combobox_acoustic_data_choice.currentIndex()
-            freq_noise_id = self.combobox_freq_noise_from_profile_tail.currentIndex()
 
-            if stg.BS_mean[data_id].shape == (0,):
-                return
+            if stg.BS_mean[self.combobox_acoustic_data_choice.currentIndex()].shape != (0,):
 
-            self.verticalLayout_groupbox_plot_profile_tail.removeWidget(self.canvas_profile_tail)
+                self.verticalLayout_groupbox_plot_profile_tail.removeWidget(self.canvas_profile_tail)
 
-            if self.fig_profile_tail is not None:
-                self.fig_profile_tail.clear()
+                self.fig_profile_tail, self.axis_profile_tail = plt.subplots(nrows=1, ncols=1, layout='constrained')
+                self.canvas_profile_tail = FigureCanvas(self.fig_profile_tail)
 
-            self.fig_profile_tail, self.axis_profile_tail = \
-                plt.subplots(nrows=1, ncols=1, layout='constrained')
-            self.canvas_profile_tail = FigureCanvas(self.fig_profile_tail)
+                self.verticalLayout_groupbox_plot_profile_tail.addWidget(self.canvas_profile_tail)
 
-            self.verticalLayout_groupbox_plot_profile_tail.addWidget(self.canvas_profile_tail)
+                self.axis_profile_tail.plot(
+                        -stg.depth[self.combobox_acoustic_data_choice.currentIndex()][self.combobox_freq_noise_from_profile_tail.currentIndex()],
+                        stg.BS_mean[self.combobox_acoustic_data_choice.currentIndex()][self.combobox_freq_noise_from_profile_tail.currentIndex()],
+                        color="blue", linewidth=1)
+                self.axis_profile_tail.plot(
+                        -stg.depth[self.combobox_acoustic_data_choice.currentIndex()][
+                            self.combobox_freq_noise_from_profile_tail.currentIndex()],
+                        float(self.lineEdit_profile_tail_value.text().replace(",", ".")) *
+                            np.ones(stg.depth[self.combobox_acoustic_data_choice.currentIndex()][
+                                self.combobox_freq_noise_from_profile_tail.currentIndex()].shape[0]),
+                        linestyle='dashed', linewidth=2, color='red')
 
-            self.axis_profile_tail.plot(
-                -stg.depth[data_id][freq_noise_id],
-                stg.BS_mean[data_id][freq_noise_id],
-                color="blue", linewidth=1
-            )
-            self.axis_profile_tail.plot(
-                -stg.depth[data_id][freq_noise_id],
-                float(self.lineEdit_profile_tail_value.text().replace(",", "."))
-                * np.ones(stg.depth[data_id][freq_noise_id].shape[0]),
-                linestyle='dashed', linewidth=2, color='red'
-            )
+                self.axis_profile_tail.set_yscale('log')
+                self.axis_profile_tail.tick_params(axis='both', labelsize=8)
+                self.axis_profile_tail.text(.98, .03, "Depth (m)",
+                                            fontsize=8, fontweight='bold', fontname="DejaVu Sans", c="black", alpha=0.9,
+                                            horizontalalignment='right', verticalalignment='bottom', rotation='horizontal',
+                                            transform=self.axis_profile_tail.transAxes)
+                self.axis_profile_tail.text(.1, .45, "BS signal (v)",
+                                            fontsize=8, fontweight='bold', fontname="DejaVu Sans", c="black", alpha=0.9,
+                                            horizontalalignment='right', verticalalignment='bottom', rotation='vertical',
+                                            transform=self.axis_profile_tail.transAxes)
+                self.axis_profile_tail.text(.98, .85,
+                                            stg.freq_text[self.combobox_acoustic_data_choice.currentIndex()][
+                                                self.combobox_freq_noise_from_profile_tail.currentIndex()],
+                                            fontsize=10, fontweight='bold', fontname="DejaVu Sans", c="black", alpha=0.5,
+                                            horizontalalignment='right', verticalalignment='bottom',
+                                            transform=self.axis_profile_tail.transAxes)
 
-            self.axis_profile_tail.set_yscale('log')
-            self.axis_profile_tail.tick_params(axis='both', labelsize=8)
-            self.axis_profile_tail.text(
-                .98, .03, "Depth (m)",
-                fontsize=8, fontweight='bold',
-                fontname="DejaVu Sans", c="black", alpha=0.9,
-                horizontalalignment='right',
-                verticalalignment='bottom', rotation='horizontal',
-                transform=self.axis_profile_tail.transAxes
-            )
-            self.axis_profile_tail.text(
-                .1, .45, "BS signal (v)",
-                fontsize=8, fontweight='bold',
-                fontname="DejaVu Sans", c="black", alpha=0.9,
-                horizontalalignment='right',
-                verticalalignment='bottom', rotation='vertical',
-                transform=self.axis_profile_tail.transAxes
-            )
-            self.axis_profile_tail.text(
-                .98, .85,
-                stg.freq_text[data_id][freq_noise_id],
-                fontsize=10, fontweight='bold',
-                fontname="DejaVu Sans", c="black", alpha=0.5,
-                horizontalalignment='right', verticalalignment='bottom',
-                transform=self.axis_profile_tail.transAxes
-            )
-
-            self.fig_profile_tail.canvas.draw_idle()
+                self.fig_profile_tail.canvas.draw_idle()
 
     # ------------------------------------------------------
 
@@ -1166,12 +1142,7 @@ class SignalProcessingTab(QWidget):
     def plot_noise(self):
         self.horizontalLayout_groupbox_plot_noise_data.removeWidget(self.canvas_noise)
 
-        if self.fig_noise is not None:
-            self.fig_noise.clear()
-
-        self.fig_noise, self.axis_noise = plt.subplots(
-            nrows=1, ncols=1, layout="constrained"
-        )
+        self.fig_noise, self.axis_noise = plt.subplots(nrows=1, ncols=1, layout="constrained")
         self.canvas_noise = FigureCanvas(self.fig_noise)
 
         self.horizontalLayout_groupbox_plot_noise_data.addWidget(self.canvas_noise)
@@ -1219,9 +1190,6 @@ class SignalProcessingTab(QWidget):
                 self.verticalLayout_groupbox_plot_SNR.removeWidget(self.toolbar_SNR)
                 self.verticalLayout_groupbox_plot_SNR.removeWidget(self.scroll_SNR)
 
-                if self.fig_SNR is not None:
-                    self.fig_SNR.clear()
-
                 self.fig_SNR, self.axis_SNR = plt.subplots(
                     nrows=stg.freq[data_id].shape[0], ncols=1,
                     sharex=True, sharey=False, layout='constrained'
@@ -1402,9 +1370,6 @@ class SignalProcessingTab(QWidget):
             self.verticalLayout_groupbox_plot_pre_processed_data_2D_field\
                 .removeWidget(self.scroll_BS)
 
-            if self.fig_BS is not None:
-                self.fig_BS.clear()
-
             self.fig_BS, self.axis_BS = plt.subplots(
                 nrows=stg.freq[data_id].shape[0], ncols=1,
                 sharex=True, sharey=False, layout="constrained"
@@ -1636,12 +1601,7 @@ class SignalProcessingTab(QWidget):
             self.verticalLayout_groupbox_plot_profile.removeWidget(self.toolbar_profile)
             self.verticalLayout_groupbox_plot_profile.removeWidget(self.canvas_profile)
 
-            if self.figure_profile is not None:
-                self.figure_profile.clear()
-
-            self.figure_profile, self.axis_profile = plt.subplots(
-                nrows=1, ncols=1, layout="constrained"
-            )
+            self.figure_profile, self.axis_profile = plt.subplots(nrows=1, ncols=1, layout="constrained")
             self.canvas_profile = FigureCanvas(self.figure_profile)
             self.toolbar_profile = NavigationToolBar(self.canvas_profile, self)