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2 Commits
4a8b318ea4
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0b10926978
| Author | SHA1 | Date |
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 Pierre-Antoine
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0b10926978 | |
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Pierre-Antoine
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fbda28eb86 |
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@ -67,7 +67,9 @@ class SedimentCalibrationTab(QWidget):
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self._setup_widgets()
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self._setup_widgets()
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def _path_icon(self, icon):
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def _path_icon(self, icon):
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return os.path.join("icons", icon)
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return os.path.join(
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os.path.dirname(__file__), "..", "icons", icon
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)
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def _setup_icons(self):
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def _setup_icons(self):
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self.icon_folder = QIcon(self._path_icon("folder.png"))
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self.icon_folder = QIcon(self._path_icon("folder.png"))
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@ -2065,119 +2067,128 @@ class SedimentCalibrationTab(QWidget):
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stg.alpha_s = [alpha_s_freq1, alpha_s_freq2]
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stg.alpha_s = [alpha_s_freq1, alpha_s_freq2]
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logger.debug(f"\u03B1s for frequency of freq1 : {alpha_s_freq1:.2f} /m \n")
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logger.debug(
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logger.debug(f"\u03B1s for frequency of freq2 : {alpha_s_freq2:.2f} /m")
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f"\u03B1s for frequency of freq1 : {alpha_s_freq1:.2f} / m"
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)
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logger.debug(
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f"\u03B1s for frequency of freq2 : {alpha_s_freq2:.2f} / m"
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)
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self.lineEdit_alphas_freq1.clear()
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self.lineEdit_alphas_freq1.clear()
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self.lineEdit_alphas_freq1.setText(str("%.5f" % alpha_s_freq1))
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self.lineEdit_alphas_freq1.setText(f"{alpha_s_freq1:.5f}")
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self.lineEdit_alphas_freq2.clear()
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self.lineEdit_alphas_freq2.clear()
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self.lineEdit_alphas_freq2.setText(str("%.5f" % alpha_s_freq2))
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self.lineEdit_alphas_freq2.setText(f"{alpha_s_freq2:.5f}")
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title = "Alpha computation error"
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icon = self._path_icon("no_approved.png")
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if (alpha_s_freq1 < 0) or (alpha_s_freq2 < 0):
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if (alpha_s_freq1 < 0) or (alpha_s_freq2 < 0):
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text = "Sediment sound attenuation is negative !"
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msgBox = QMessageBox()
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msgBox.setWindowTitle("Alpha computation error")
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msgBox.setIconPixmap(QPixmap(self._path_icon("no_approved.png")).scaledToHeight(32, Qt.SmoothTransformation))
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msgBox.setText("Sediment sound attenuation is negative !")
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msgBox.setStandardButtons(QMessageBox.Ok)
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msgBox.exec()
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elif isinf(alpha_s_freq1) or isinf(alpha_s_freq2):
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elif isinf(alpha_s_freq1) or isinf(alpha_s_freq2):
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text = "Sediment sound attenuation is infinite !"
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msgBox = QMessageBox()
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msgBox.setWindowTitle("Alpha computation error")
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msgBox.setIconPixmap(
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QPixmap(self._path_icon("no_approved.png")).scaledToHeight(32, Qt.SmoothTransformation))
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msgBox.setText("Sediment sound attenuation is infinite !")
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msgBox.setStandardButtons(QMessageBox.Ok)
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msgBox.exec()
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else:
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else:
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title = "Alpha computation validation"
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icon = self._path_icon("approved.png")
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text = "Sediment sound attenuation is positive."
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msgBox = QMessageBox()
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msgBox = QMessageBox()
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msgBox.setWindowTitle("Alpha computation validation")
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msgBox.setWindowTitle(title)
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msgBox.setIconPixmap(QPixmap(self._path_icon("approved.png")).scaledToHeight(32, Qt.SmoothTransformation))
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msgBox.setIconPixmap(
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msgBox.setText("Sediment sound attenuation is positive.")
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QPixmap(icon).scaledToHeight(
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32, Qt.SmoothTransformation
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)
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)
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msgBox.setText(text)
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msgBox.setStandardButtons(QMessageBox.Ok)
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msgBox.setStandardButtons(QMessageBox.Ok)
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msgBox.exec()
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msgBox.exec()
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def compute_zeta(self):
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def compute_zeta(self):
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# --- Compute zeta ---
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if stg.M_profile_fine.shape == (0,):
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if stg.M_profile_fine.shape == (0,):
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msgBox = QMessageBox()
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msgBox = QMessageBox()
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msgBox.setWindowTitle("Zeta computation error")
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msgBox.setWindowTitle("Zeta computation error")
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msgBox.setIcon(QMessageBox.Warning)
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msgBox.setIcon(QMessageBox.Warning)
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msgBox.setText("Please interpolate fine profile")
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msgBox.setText("Please interpolate fine profile")
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msgBox.setStandardButtons(QMessageBox.Ok)
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msgBox.setStandardButtons(QMessageBox.Ok)
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msgBox.exec()
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msgBox.exec()
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return
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data_id = self.combobox_acoustic_data_choice.currentIndex()
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freq_1 = self.combobox_freq1.currentIndex()
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freq_2 = self.combobox_freq2.currentIndex()
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if stg.depth_cross_section[data_id].shape != (0,):
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depth_data = stg.depth_cross_section
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else:
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else:
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depth_data = stg.depth
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if stg.depth_cross_section[self.combobox_acoustic_data_choice.currentIndex()].shape != (0,):
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zeta_freq1 = self.inv_hc.zeta(
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alpha_s = stg.alpha_s[0],
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zeta_freq1 = self.inv_hc.zeta(alpha_s=stg.alpha_s[0],
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r = depth_data[data_id][freq_1, :],
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r=stg.depth_cross_section[self.combobox_acoustic_data_choice.currentIndex()][
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M_profile_fine = stg.M_profile_fine
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self.combobox_freq1.currentIndex(), :],
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)
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M_profile_fine=stg.M_profile_fine)
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zeta_freq2 = self.inv_hc.zeta(
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zeta_freq2 = self.inv_hc.zeta(alpha_s=stg.alpha_s[1],
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alpha_s = stg.alpha_s[1],
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r=stg.depth_cross_section[self.combobox_acoustic_data_choice.currentIndex()][
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r = depth_data[data_id][freq_2, :],
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self.combobox_freq2.currentIndex(), :],
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M_profile_fine = stg.M_profile_fine
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M_profile_fine=stg.M_profile_fine)
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)
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else:
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zeta_freq1 = self.inv_hc.zeta(alpha_s=stg.alpha_s[0],
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r=stg.depth[self.combobox_acoustic_data_choice.currentIndex()][
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self.combobox_freq1.currentIndex(), :],
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M_profile_fine=stg.M_profile_fine)
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zeta_freq2 = self.inv_hc.zeta(alpha_s=stg.alpha_s[1],
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r=stg.depth[self.combobox_acoustic_data_choice.currentIndex()][
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self.combobox_freq2.currentIndex(), :],
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M_profile_fine=stg.M_profile_fine)
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stg.zeta = [zeta_freq1, zeta_freq2]
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stg.zeta = [zeta_freq1, zeta_freq2]
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logger.debug(f"\u03B6 for frequency of freq1 : {zeta_freq1:.3f} /m \n")
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logger.debug(
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logger.debug(f"\u03B6 for frequency of freq2 : {zeta_freq2:.3f} /m")
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f"\u03B6 for frequency of freq1 : {zeta_freq1:.3f} / m"
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)
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logger.debug(
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f"\u03B6 for frequency of freq2 : {zeta_freq2:.3f} / m"
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)
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self.lineEdit_zeta_freq1.clear()
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self.lineEdit_zeta_freq1.clear()
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self.lineEdit_zeta_freq1.setText(str("%.5f" % zeta_freq1))
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self.lineEdit_zeta_freq1.setText(f"{zeta_freq1:.5f}")
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self.lineEdit_zeta_freq2.clear()
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self.lineEdit_zeta_freq2.clear()
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self.lineEdit_zeta_freq2.setText(str("%.5f" % zeta_freq2))
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self.lineEdit_zeta_freq2.setText(f"{zeta_freq2:.5f}")
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def save_calibration(self):
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def save_calibration(self):
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data_id = self.combobox_acoustic_data_choice.currentIndex()
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freq1 = stg.frequencies_for_calibration[0][1]
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freq2 = stg.frequencies_for_calibration[1][1]
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if stg.alpha_s:
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if stg.alpha_s:
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directory = ""
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if stg.path_calibration_file != "":
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directory = stg.path_calibration_file
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elif self.combobox_acoustic_data_choice.count() > 0:
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directory = stg.path_BS_raw_data[-1]
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dir_save_cal = QFileDialog.getExistingDirectory(
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dir_save_cal = QFileDialog.getExistingDirectory(
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caption="Save calibration",
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caption="Save calibration",
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directory=[stg.path_calibration_file if stg.path_calibration_file else stg.path_BS_raw_data[-1] if self.combobox_acoustic_data_choice.count() > 0 else ""][0],
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directory=directory,
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options=QFileDialog.DontUseNativeDialog)
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options=QFileDialog.DontUseNativeDialog
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)
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if dir_save_cal:
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if dir_save_cal:
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stg.path_calibration_file = os.path.dirname(dir_save_cal)
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stg.path_calibration_file = os.path.dirname(dir_save_cal)
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cal_array = [[' ', stg.freq_text[self.combobox_acoustic_data_choice.currentIndex()][stg.frequencies_for_calibration[0][1]],
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cal_array = [
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stg.freq_text[self.combobox_acoustic_data_choice.currentIndex()][stg.frequencies_for_calibration[1][1]]],
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[
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' ', stg.freq_text[data_id][freq1],
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stg.freq_text[data_id][freq2]
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],
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['ks', stg.ks[0], stg.ks[1]],
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['ks', stg.ks[0], stg.ks[1]],
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['sv', stg.sv[0], stg.sv[1]],
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['sv', stg.sv[0], stg.sv[1]],
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['X', stg.X_exponent[0], 0],
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['X', stg.X_exponent[0], 0],
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['alphas', stg.alpha_s[0], stg.alpha_s[1]],
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['alphas', stg.alpha_s[0], stg.alpha_s[1]],
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['zeta', stg.zeta[0], stg.zeta[1]]]
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['zeta', stg.zeta[0], stg.zeta[1]]
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]
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eval("np.savetxt('"+ dir_save_cal + "/Sediment_calibration_" +
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str(stg.filename_BS_raw_data[self.combobox_acoustic_data_choice.currentIndex()][:-4]) + ".csv' ," +
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"cal_array, " +
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"delimiter=',' ," +
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"fmt ='% s'" +
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")")
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np.savetxt(
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f"{dir_save_cal}/Sediment_calibration_"
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+ f"{stg.filename_BS_raw_data[data_id][:-4]}.csv",
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cal_array,
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delimiter=',', fmt ='% s'
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)
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else:
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else:
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msgBox = QMessageBox()
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msgBox = QMessageBox()
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msgBox.setWindowTitle("Save Error")
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msgBox.setWindowTitle("Save Error")
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msgBox.setIcon(QMessageBox.Warning)
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msgBox.setIcon(QMessageBox.Warning)
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@ -2190,68 +2201,49 @@ class SedimentCalibrationTab(QWidget):
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# ------------ Computing real cell size ------------ #
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# ------------ Computing real cell size ------------ #
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def range_cells_function(self):
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def range_cells_function(self):
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""" Computing the real cell size, that depends on the temperature """
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""" Computing the real cell size, that depends on the temperature """
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data_id = self.combobox_acoustic_data_choice.currentIndex()
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if stg.depth_cross_section[self.combobox_acoustic_data_choice.currentIndex()].shape != (0,):
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aquascat_cell_size = []
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aquascat_cell_size = []
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tau = []
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tau = []
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real_cell_size = []
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real_cell_size = []
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stg.depth_real = np.zeros(stg.depth_cross_section[self.combobox_acoustic_data_choice.currentIndex()].shape)
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if stg.depth_cross_section[data_id].shape != (0,):
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depth_data = stg.depth_cross_section
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else:
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depth_data = stg.depth
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for f in range(stg.freq[self.combobox_acoustic_data_choice.currentIndex()].shape[0]):
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stg.depth_real = np.zeros(depth_data[data_id].shape)
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for f in range(stg.freq[data_id].shape[0]):
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# defaut Aquascat cell size
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# defaut Aquascat cell size
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aquascat_cell_size.append(
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aquascat_cell_size.append(
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stg.depth_cross_section[self.combobox_acoustic_data_choice.currentIndex()][f, 1] -
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depth_data[data_id][f, 1] - depth_data[data_id][f, 0]
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stg.depth_cross_section[self.combobox_acoustic_data_choice.currentIndex()][f, 0])
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)
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# Pulse duration
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# Pulse duration: figure 2.9 1500 vitesse du son entrée
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tau.append(aquascat_cell_size[f] * 2 / 1500) # figure 2.9 1500 vitesse du son entrée pour le paramètrage des mesures aquascat
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# pour le paramètrage des mesures aquascat
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tau.append(aquascat_cell_size[f] * 2 / 1500)
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# Real cell size
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# voir fig 2.9
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real_cell_size.append(stg.water_velocity * tau[f] / 2) # voir fig 2.9
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real_cell_size.append(stg.water_velocity * tau[f] / 2)
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# Converting to real cell profile
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# Converting to real cell profile
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stg.depth_real[f, :] = (stg.depth_cross_section[self.combobox_acoustic_data_choice.currentIndex()][f, :]
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stg.depth_real[f, :] = (
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/ aquascat_cell_size[f] * real_cell_size[f])
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depth_data[data_id][f, :]
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/ aquascat_cell_size[f]
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* real_cell_size[f]
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)
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if stg.time_cross_section[data_id].shape != (0,):
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time_data = stg.time_cross_section
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else:
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else:
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time_data = stg.time
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aquascat_cell_size = []
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stg.depth_real = np.repeat(
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tau = []
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stg.depth_real[:, :, np.newaxis],
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real_cell_size = []
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time_data[data_id].shape[1], axis=2
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)
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stg.depth_real = (np.zeros(stg.depth[self.combobox_acoustic_data_choice.currentIndex()].shape))
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for f in range(stg.freq[self.combobox_acoustic_data_choice.currentIndex()].shape[0]):
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# defaut Aquascat cell size
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aquascat_cell_size.append(
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stg.depth[self.combobox_acoustic_data_choice.currentIndex()][f, 1] -
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stg.depth[self.combobox_acoustic_data_choice.currentIndex()][f, 0])
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# Pulse duration
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tau.append(aquascat_cell_size[f] * 2 / 1500) # figure 2.9 1500 vitesse du son entrée pour le paramètrage des mesures aquascat
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# Real cell size
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real_cell_size.append(stg.water_velocity * tau[f] / 2) # voir fig 2.9
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# Converting to real cell profile
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stg.depth_real[f, :] = (stg.depth[self.combobox_acoustic_data_choice.currentIndex()][f, :] /
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aquascat_cell_size[f] * real_cell_size[f])
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if stg.time_cross_section[self.combobox_acoustic_data_choice.currentIndex()].shape != (0,):
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stg.depth_real = \
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(np.repeat(stg.depth_real[:, :, np.newaxis],
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stg.time_cross_section[self.combobox_acoustic_data_choice.currentIndex()].shape[1], axis=2))
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else:
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stg.depth_real = (
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np.repeat(stg.depth_real[:, :, np.newaxis],
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stg.time[self.combobox_acoustic_data_choice.currentIndex()].shape[1], axis=2))
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def compute_FCB(self):
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def compute_FCB(self):
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data_id = self.combobox_acoustic_data_choice.currentIndex()
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data_id = self.combobox_acoustic_data_choice.currentIndex()
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