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README.md
48
README.md
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@ -11,13 +11,17 @@ It is divided in six tabs:
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- Calibration : calibration parameter are computed
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- Inversion : inversion method is calculated to provide fine and sand sediments fields
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## Installation
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## Software documentation
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### Installation
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Acoused is developped for Linux and Windows on Python version 3.8 or
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greater. By default, Acoused is developped with Pypi package
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dependencies, but is also possible to use Guix package manager to run
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Acoused.
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## Development documentation
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### **TODO** Windows
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### Linux
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@ -45,6 +49,27 @@ script `guix.sh` to run the program.
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guix shell sqlitebrowser -- ./guix.sh
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```
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## License
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||||
|
||||
AcouSed
|
||||
Copyright (C) 2024 - INRAE
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||||
This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
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||||
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
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||||
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||||
You should have received a copy of the GNU General Public License along with this program. If not, see <https://www.gnu.org/licenses/>.
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|
||||
## Authors & Contacts
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- Brahim MOUDJED 2022-2025 ([INRAE](https://www.inrae.fr/))
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||||
- Pierre-Antoine ROUBY 2025 ([TECC](https://parouby.fr))
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||||
If you have any questions or suggestions, please contact us to celine.berni@inrae.fr and/or jerome.lecoz@inrae.fr.
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||||
## Acknowledgment (Funding)
|
||||
This study was conducted within the [Rhône Sediment Observatory](https://observatoire-sediments-rhone.fr/) (OSR), a multi-partner research program funded through the Plan Rhône by the European Regional Development Fund (ERDF), Agence de l’Eau RMC, CNR, EDF and three regional councils (Auvergne-Rhône-Alpes, PACA and Occitanie). It was also support by CNR.
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||||
## Support files & References
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- [ ] [Acoustic inversion method diagram](https://forgemia.inra.fr/theophile.terraz/acoused/-/blob/main/Acoustic_Inversion_theory.pdf?ref_type=heads)
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@ -55,24 +80,3 @@ script `guix.sh` to run the program.
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- [ ] [Vergne A., Le Coz J., Berni C., & Pierrefeu G. (2020), Water Resources Research, 56(2)](https://doi.org/10.1029/2019WR024877)
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- [ ] [Vergne A., Berni C., Le Coz J., & Tencé F., (2021), Water Resources Research, 57(9)](https://doi.org/10.1029/2021WR029589)
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||||
|
||||
## Authors & Contacts
|
||||
|
||||
- Brahim MOUDJED 2022-2025 ([INRAE](https://www.inrae.fr/))
|
||||
- Pierre-Antoine ROUBY 2025 ([TECC](https://parouby.fr))
|
||||
|
||||
If you have any questions or suggestions, please contact us to celine.berni@inrae.fr and/or jerome.lecoz@inrae.fr.
|
||||
|
||||
## Acknowledgment (Funding)
|
||||
|
||||
This study was conducted within the [Rhône Sediment Observatory](https://observatoire-sediments-rhone.fr/) (OSR), a multi-partner research program funded through the Plan Rhône by the European Regional Development Fund (ERDF), Agence de l’Eau RMC, CNR, EDF and three regional councils (Auvergne-Rhône-Alpes, PACA and Occitanie). It was also support by CNR.
|
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|
||||
## License
|
||||
|
||||
AcouSed
|
||||
Copyright (C) 2024-2025 - INRAE
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||||
|
||||
This program is free software: you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
|
||||
|
||||
This program is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the GNU General Public License for more details.
|
||||
|
||||
You should have received a copy of the GNU General Public License along with this program. If not, see <https://www.gnu.org/licenses/>.
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||||
|
|
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|
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@ -1,6 +1,6 @@
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# ============================================================================== #
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# acoustic_data_tab.py - AcouSed #
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# Copyright (C) 2024-2025 INRAE #
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# Copyright (C) 2024 INRAE #
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||||
# #
|
||||
# This program is free software: you can redistribute it and/or modify #
|
||||
# it under the terms of the GNU General Public License as published by #
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||||
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@ -20,21 +20,6 @@
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|||
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||||
# -*- coding: utf-8 -*-
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import os
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import locale
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||||
import logging
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import numpy as np
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import pandas as pd
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||||
|
||||
from re import findall
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from copy import deepcopy
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||||
from scipy.signal import savgol_filter
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|
||||
import matplotlib.pyplot as plt
|
||||
from matplotlib.colors import LogNorm, CSS4_COLORS, BoundaryNorm
|
||||
from matplotlib.backends.backend_qt5agg import FigureCanvasQTAgg as FigureCanvas
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||||
from matplotlib.backends.backend_qt5agg import NavigationToolbar2QT as NavigationToolBar
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||||
|
||||
from PyQt5.QtWidgets import (
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QWidget, QVBoxLayout, QHBoxLayout, QGroupBox,
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|
|
@ -49,9 +34,26 @@ from PyQt5.QtCore import (
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|||
QPropertyAnimation
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||||
)
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||||
|
||||
import numpy as np
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import pandas as pd
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||||
|
||||
import matplotlib.pyplot as plt
|
||||
from matplotlib.colors import LogNorm, CSS4_COLORS, BoundaryNorm
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||||
from matplotlib.backends.backend_qt5agg import FigureCanvasQTAgg as FigureCanvas
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||||
from matplotlib.backends.backend_qt5agg import NavigationToolbar2QT as NavigationToolBar
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||||
|
||||
import os
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from copy import deepcopy
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import locale
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||||
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locale.setlocale(locale.LC_ALL, '')
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from scipy.signal import savgol_filter
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from re import findall
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from pyqt_file_list_widget.fileListWidget import FileListWidget
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import settings as stg
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import Translation.constant_string as cs
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from Model.TableModel import TableModel
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@ -59,12 +61,10 @@ from Model.acoustic_data_loader import AcousticDataLoader
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from Model.acoustic_data_loader_UBSediFlow import AcousticDataLoaderUBSediFlow
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from Model.calibration_constant_kt import CalibrationConstantKt
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locale.setlocale(locale.LC_ALL, '')
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import settings as stg
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_translate = QCoreApplication.translate
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logger = logging.getLogger()
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class AcousticDataTab(QWidget):
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COMPTEUR = 1
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@ -79,8 +79,18 @@ class AcousticDataTab(QWidget):
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def __init__(self, tab_widget):
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super().__init__()
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self._setup_icons()
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self.path_icon = "./icons/"
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self.icon_folder = QIcon(self.path_icon + "folder.png")
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self.icon_apply_limits = QIcon(self.path_icon + "circle_green_arrow_right.png")
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self.icon_triangle_left_to_begin = QIcon(self.path_icon + "triangle_left_to_begin.png")
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self.icon_triangle_left = QIcon(self.path_icon + "triangle_left.png")
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self.icon_triangle_right = QIcon(self.path_icon + "triangle_right.png")
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self.icon_triangle_right_to_end = QIcon(self.path_icon + "triangle_right_to_end.png")
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self.icon_add = QIcon(self.path_icon + "add.png")
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self.icon_delete = QIcon(self.path_icon + "delete.png")
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self.icon_clear = QIcon(self.path_icon + "clear.png")
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self.icon_between = QPixmap(self.path_icon + "between.png")
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self.icon_refresh = QIcon(self.path_icon + "update.png")
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self.calib_kt = CalibrationConstantKt()
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### --- General layout of widgets ---
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@ -632,7 +642,7 @@ class AcousticDataTab(QWidget):
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self.fileListWidget.itemSelectionChanged.connect(self.compute_tmin_tmax)
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self.fileListWidget.itemSelectionChanged.connect(self.compute_rmin_rmax)
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self.fileListWidget.itemSelectionChanged.connect(self.update_frequency_combobox)
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# self.fileListWidget.itemSelectionChanged.connect(self.plot_backscattered_acoustic_signal_recording)
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self.fileListWidget.itemSelectionChanged.connect(self.plot_backscattered_acoustic_signal_recording)
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self.fileListWidget.itemSelectionChanged.connect(self.plot_profile)
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self.fileListWidget.itemSelectionChanged.connect(self.update_plot_backscattered_acoustic_signal_recording)
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self.fileListWidget.itemSelectionChanged.connect(self.update_plot_profile)
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@ -681,25 +691,6 @@ class AcousticDataTab(QWidget):
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self.slider.valueChanged.connect(self.update_plot_profile)
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self.slider.valueChanged.connect(self.update_plot_backscattered_acoustic_signal_recording)
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||||
def _setup_icons(self):
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def path_icon(icon):
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||||
return os.path.join(
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"icons", icon
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||||
)
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||||
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||||
self.icon_folder = QIcon(path_icon("folder.png"))
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self.icon_apply_limits = QIcon(path_icon("circle_green_arrow_right.png"))
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self.icon_triangle_left_to_begin = QIcon(path_icon("triangle_left_to_begin.png"))
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||||
self.icon_triangle_left = QIcon(path_icon("triangle_left.png"))
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||||
self.icon_triangle_right = QIcon(path_icon("triangle_right.png"))
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||||
self.icon_triangle_right_to_end = QIcon(path_icon("triangle_right_to_end.png"))
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||||
self.icon_add = QIcon(path_icon("add.png"))
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||||
self.icon_delete = QIcon(path_icon("delete.png"))
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||||
self.icon_clear = QIcon(path_icon("clear.png"))
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||||
self.icon_between = QPixmap(path_icon("between.png"))
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||||
self.icon_refresh = QIcon(path_icon("update.png"))
|
||||
|
||||
|
||||
# -------------------- Functions for Acoustic dataTab --------------------
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||||
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||||
def retranslate_acoustic_data_tab(self):
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||||
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|
@ -1109,6 +1100,7 @@ class AcousticDataTab(QWidget):
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|||
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||||
def distance_from_ABS_to_free_surface(self):
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||||
if self.fileListWidget.count() == 0:
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||||
|
||||
msgBox = QMessageBox()
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||||
msgBox.setWindowTitle("Distance ABS - Free surface Error")
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||||
msgBox.setIcon(QMessageBox.Warning)
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||||
|
|
@ -1117,22 +1109,18 @@ class AcousticDataTab(QWidget):
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|||
msgBox.exec()
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||||
self.lineEdit_distance_from_ABS_to_free_surface.setText("0.00")
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||||
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||||
else:
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||||
stg.distance_from_ABS_to_free_surface[self.fileListWidget\
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||||
.currentRow()] = (
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||||
float(
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||||
self.lineEdit_distance_from_ABS_to_free_surface\
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||||
.text().replace(",", ".")
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||||
)
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||||
)
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||||
|
||||
stg.distance_from_ABS_to_free_surface[self.fileListWidget.currentRow()] = (
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||||
float(self.lineEdit_distance_from_ABS_to_free_surface.text().replace(",", ".")))
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||||
self.lineEdit_distance_from_ABS_to_free_surface.setText(
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str("%4s" % stg.distance_from_ABS_to_free_surface[self.fileListWidget.currentRow()]))
|
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|
||||
def refresh_distance_from_ABS_to_free_surface(self):
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acoustic_data = AcousticDataLoader(
|
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stg.path_BS_raw_data[self.fileListWidget.currentRow()] + "/" +
|
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stg.filename_BS_raw_data[self.fileListWidget.currentRow()]
|
||||
)
|
||||
|
||||
acoustic_data = AcousticDataLoader(stg.path_BS_raw_data[self.fileListWidget.currentRow()] + "/" +
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stg.filename_BS_raw_data[self.fileListWidget.currentRow()])
|
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|
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stg.depth[self.fileListWidget.currentRow()] = acoustic_data._r
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stg.depth_reshape[self.fileListWidget.currentRow()] = acoustic_data.reshape_r()
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|
|
@ -1306,8 +1294,6 @@ class AcousticDataTab(QWidget):
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msgBox.setStandardButtons(QMessageBox.Ok)
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msgBox.exec()
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else:
|
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self.fileListWidget.blockSignals(True)
|
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|
||||
if self.fileListWidget.count() == 0:
|
||||
for p, f in zip(stg.path_BS_raw_data,
|
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stg.filename_BS_raw_data):
|
||||
|
|
@ -1336,8 +1322,6 @@ class AcousticDataTab(QWidget):
|
|||
)
|
||||
)
|
||||
|
||||
self.fileListWidget.blockSignals(False)
|
||||
|
||||
def rename_file_in_ListWidget(self, event):
|
||||
|
||||
if event == QEvent.MouseButtonPress:
|
||||
|
|
@ -1457,20 +1441,14 @@ class AcousticDataTab(QWidget):
|
|||
|
||||
def clear_files_from_ListWidget(self):
|
||||
|
||||
list_to_clear = [
|
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"stg.acoustic_data", "stg.date", "stg.hour",
|
||||
"stg.freq", "stg.freq_text", "stg.temperature",
|
||||
"stg.nb_profiles", "stg.nb_profiles_per_sec",
|
||||
"stg.nb_cells", "stg.cell_size",
|
||||
"stg.pulse_length", "stg.nb_pings_per_sec",
|
||||
"stg.nb_pings_averaged_per_profile",
|
||||
list_to_clear = ["stg.acoustic_data", "stg.date", "stg.hour", "stg.freq", "stg.freq_text", "stg.temperature",
|
||||
"stg.nb_profiles", "stg.nb_profiles_per_sec", "stg.nb_cells", "stg.cell_size",
|
||||
"stg.pulse_length", "stg.nb_pings_per_sec", "stg.nb_pings_averaged_per_profile",
|
||||
"stg.kt_read", "stg.kt_corrected", "stg.gain_rx", "stg.gain_tx",
|
||||
"stg.BS_raw_data", "stg.time", "stg.depth",
|
||||
"stg.BS_raw_data_reshape", "stg.time_reshape", "stg.depth_reshape",
|
||||
"stg.rmin", "stg.rmax", "stg.tmin", "stg.tmax",
|
||||
"stg.time_cross_section", "stg.depth_cross_section",
|
||||
"stg.BS_cross_section"
|
||||
]
|
||||
"stg.time_cross_section", "stg.depth_cross_section", "stg.BS_cross_section"]
|
||||
|
||||
for k in list_to_clear:
|
||||
if isinstance(k, list):
|
||||
|
|
@ -1552,42 +1530,34 @@ class AcousticDataTab(QWidget):
|
|||
self.slider.setMaximum(10)
|
||||
|
||||
def load_BS_acoustic_raw_data(self):
|
||||
|
||||
if self.fileListWidget.count() == 0:
|
||||
for p, f in zip(stg.path_BS_raw_data,
|
||||
stg.filename_BS_raw_data):
|
||||
if self.combobox_ABS_system_choice.currentIndex() == 1:
|
||||
acoustic_data = AcousticDataLoader(
|
||||
os.path.join(p, f)
|
||||
)
|
||||
elif self.combobox_ABS_system_choice.currentIndex() == 2:
|
||||
acoustic_data = AcousticDataLoaderUBSediFlow(
|
||||
os.path.join(p, f)
|
||||
)
|
||||
|
||||
self.initiate_setting_parameters(
|
||||
acoustic_data=acoustic_data
|
||||
)
|
||||
for p, f in zip(stg.path_BS_raw_data, stg.filename_BS_raw_data):
|
||||
|
||||
if self.combobox_ABS_system_choice.currentIndex() == 1:
|
||||
|
||||
acoustic_data = AcousticDataLoader(p + "/" + f)
|
||||
|
||||
elif self.combobox_ABS_system_choice.currentIndex() == 2:
|
||||
|
||||
acoustic_data = AcousticDataLoaderUBSediFlow(p + "/" + f)
|
||||
|
||||
self.initiate_setting_parameters(acoustic_data=acoustic_data)
|
||||
|
||||
else:
|
||||
for k in range(self.fileListWidget.count(),
|
||||
len(stg.filename_BS_raw_data), 1):
|
||||
if self.combobox_ABS_system_choice.currentIndex() == 1:
|
||||
acoustic_data = AcousticDataLoader(
|
||||
os.path.join(
|
||||
stg.path_BS_raw_data[k],
|
||||
stg.filename_BS_raw_data[k]
|
||||
)
|
||||
)
|
||||
elif self.combobox_ABS_system_choice.currentIndex() == 2:
|
||||
acoustic_data = AcousticDataLoaderUBSediFlow(
|
||||
os.path.join(
|
||||
stg.path_BS_raw_data[k],
|
||||
stg.filename_BS_raw_data[k]
|
||||
)
|
||||
)
|
||||
|
||||
self.initiate_setting_parameters(
|
||||
acoustic_data=acoustic_data
|
||||
)
|
||||
for k in range(self.fileListWidget.count(), len(stg.filename_BS_raw_data), 1):
|
||||
|
||||
if self.combobox_ABS_system_choice.currentIndex() == 1:
|
||||
|
||||
acoustic_data = AcousticDataLoader(stg.path_BS_raw_data[k] + "/" + stg.filename_BS_raw_data[k])
|
||||
|
||||
elif self.combobox_ABS_system_choice.currentIndex() == 2:
|
||||
|
||||
acoustic_data = AcousticDataLoaderUBSediFlow(stg.path_BS_raw_data[k] + "/" + stg.filename_BS_raw_data[k])
|
||||
|
||||
self.initiate_setting_parameters(acoustic_data=acoustic_data)
|
||||
|
||||
def initiate_setting_parameters(self, acoustic_data):
|
||||
# --- The acoustic variables are field with loaded data ---
|
||||
|
|
@ -1674,290 +1644,156 @@ class AcousticDataTab(QWidget):
|
|||
stg.SSC_sand.append(np.array([]))
|
||||
|
||||
def fill_measurements_information_groupbox(self):
|
||||
if self.fileListWidget.currentRow() == -1:
|
||||
return
|
||||
|
||||
self.fill_measurements_information_groupbox_datetime()
|
||||
self.fill_measurements_information_groupbox_frequency()
|
||||
self.fill_measurements_information_groupbox_cells()
|
||||
self.fill_measurements_information_groupbox_kt()
|
||||
if self.fileListWidget.currentRow() != -1:
|
||||
|
||||
def fill_measurements_information_groupbox_datetime(self):
|
||||
self.label_date_acoustic_file.clear()
|
||||
self.label_date_acoustic_file.setText(
|
||||
"Date: " + str(stg.date[self.fileListWidget.currentRow()])
|
||||
)
|
||||
self.gridLayout_groupbox_info.addWidget(
|
||||
self.label_date_acoustic_file,
|
||||
1, 0, 1, 1,
|
||||
Qt.AlignLeft
|
||||
)
|
||||
self.label_date_acoustic_file.setText("Date: " + str(stg.date[self.fileListWidget.currentRow()]))
|
||||
self.gridLayout_groupbox_info.addWidget(self.label_date_acoustic_file, 1, 0, 1, 1, Qt.AlignLeft)
|
||||
|
||||
self.label_hour_acoustic_file.clear()
|
||||
self.label_hour_acoustic_file.setText(
|
||||
"Hour: " + str(stg.hour[self.fileListWidget.currentRow()])
|
||||
)
|
||||
self.gridLayout_groupbox_info.addWidget(
|
||||
self.label_hour_acoustic_file,
|
||||
1, 1, 1, 1,
|
||||
Qt.AlignLeft
|
||||
)
|
||||
|
||||
def fill_measurements_information_groupbox_frequency(self):
|
||||
file_id = self.fileListWidget.currentRow()
|
||||
freq_id = self.combobox_frequency_information.currentIndex()
|
||||
self.label_hour_acoustic_file.setText("Hour: " + str(stg.hour[self.fileListWidget.currentRow()]))
|
||||
self.gridLayout_groupbox_info.addWidget(self.label_hour_acoustic_file, 1, 1, 1, 1, Qt.AlignLeft)
|
||||
|
||||
self.combobox_frequency_information.clear()
|
||||
self.combobox_frequency_information.addItems(
|
||||
stg.freq_text[file_id]
|
||||
)
|
||||
self.combobox_frequency_information\
|
||||
.currentIndexChanged\
|
||||
.connect(self.combobox_frequency_information_update)
|
||||
self.combobox_frequency_information.addItems(stg.freq_text[self.fileListWidget.currentRow()])
|
||||
self.combobox_frequency_information.currentIndexChanged.connect(self.combobox_frequency_information_update)
|
||||
|
||||
self.lineEdit_temperature.setText(str(stg.temperature))
|
||||
|
||||
self.label_profiles_value.setText(
|
||||
str(stg.nb_profiles[file_id][freq_id])
|
||||
)
|
||||
self.gridLayout_groupbox_info.addWidget(
|
||||
self.label_profiles_value,
|
||||
8, 1, 1, 1,
|
||||
Qt.AlignLeft
|
||||
)
|
||||
self.label_profiles_value.setText(str(stg.nb_profiles[self.fileListWidget.currentRow()]
|
||||
[self.combobox_frequency_information.currentIndex()]))
|
||||
self.gridLayout_groupbox_info.addWidget(self.label_profiles_value, 8, 1, 1, 1, Qt.AlignLeft)
|
||||
|
||||
self.label_profiles_per_sec_value.setText(
|
||||
str(stg.nb_profiles_per_sec[file_id][freq_id]) + " Hz"
|
||||
)
|
||||
self.gridLayout_groupbox_info.addWidget(
|
||||
self.label_profiles_per_sec_value,
|
||||
9, 1, 1, 1,
|
||||
Qt.AlignLeft
|
||||
)
|
||||
self.label_profiles_per_sec_value.setText(str(stg.nb_profiles_per_sec[self.fileListWidget.currentRow()]
|
||||
[self.combobox_frequency_information.currentIndex()]) + " Hz")
|
||||
self.gridLayout_groupbox_info.addWidget(self.label_profiles_per_sec_value, 9, 1, 1, 1, Qt.AlignLeft)
|
||||
|
||||
def fill_measurements_information_groupbox_cells(self):
|
||||
file_id = self.fileListWidget.currentRow()
|
||||
freq_id = self.combobox_frequency_information.currentIndex()
|
||||
self.label_cells_value.setText(str(stg.nb_cells[self.fileListWidget.currentRow()]
|
||||
[self.combobox_frequency_information.currentIndex()]))
|
||||
self.gridLayout_groupbox_info.addWidget(self.label_cells_value, 10, 1, 1, 1, Qt.AlignLeft)
|
||||
|
||||
self.label_cells_value.setText(
|
||||
str(stg.nb_cells[file_id][freq_id])
|
||||
)
|
||||
self.gridLayout_groupbox_info.addWidget(
|
||||
self.label_cells_value,
|
||||
10, 1, 1, 1,
|
||||
Qt.AlignLeft
|
||||
)
|
||||
self.label_cell_size_value.setText(str(100*round(stg.cell_size[self.fileListWidget.currentRow()]
|
||||
[self.combobox_frequency_information.currentIndex()], 3)) + " cm")
|
||||
self.gridLayout_groupbox_info.addWidget(self.label_cell_size_value, 11, 1, 1, 1, Qt.AlignLeft)
|
||||
|
||||
self.label_cell_size_value.setText(
|
||||
str(100*round(stg.cell_size[file_id][freq_id], 3)) + " cm"
|
||||
)
|
||||
self.label_pulse_length_value.setText(str(round(stg.pulse_length[self.fileListWidget.currentRow()]
|
||||
[self.combobox_frequency_information.currentIndex()], 6)) + " sec")
|
||||
self.gridLayout_groupbox_info.addWidget(self.label_pulse_length_value, 12, 1, 1, 1, Qt.AlignLeft)
|
||||
|
||||
self.gridLayout_groupbox_info.addWidget(
|
||||
self.label_cell_size_value,
|
||||
11, 1, 1, 1,
|
||||
Qt.AlignLeft
|
||||
)
|
||||
self.label_pings_per_sec_value.setText(str(stg.nb_pings_per_sec[self.fileListWidget.currentRow()]
|
||||
[self.combobox_frequency_information.currentIndex()]) + " Hz")
|
||||
self.gridLayout_groupbox_info.addWidget(self.label_pings_per_sec_value, 13, 1, 1, 1, Qt.AlignLeft)
|
||||
|
||||
self.label_pulse_length_value.setText(
|
||||
str(round(stg.pulse_length[file_id][freq_id], 6)) + " sec"
|
||||
)
|
||||
self.gridLayout_groupbox_info.addWidget(
|
||||
self.label_pulse_length_value,
|
||||
12, 1, 1, 1,
|
||||
Qt.AlignLeft
|
||||
)
|
||||
|
||||
self.label_pings_per_sec_value.setText(
|
||||
str(stg.nb_pings_per_sec[file_id][freq_id]) + " Hz"
|
||||
)
|
||||
|
||||
self.gridLayout_groupbox_info.addWidget(
|
||||
self.label_pings_per_sec_value,
|
||||
13, 1, 1, 1,
|
||||
Qt.AlignLeft
|
||||
)
|
||||
|
||||
self.label_pings_per_profile_value.setText(
|
||||
str(stg.nb_pings_averaged_per_profile[file_id][freq_id])
|
||||
)
|
||||
|
||||
self.gridLayout_groupbox_info.addWidget(
|
||||
self.label_pings_per_profile_value,
|
||||
14, 1, 1, 1,
|
||||
Qt.AlignLeft
|
||||
)
|
||||
|
||||
def fill_measurements_information_groupbox_kt(self):
|
||||
file_id = self.fileListWidget.currentRow()
|
||||
freq_id = self.combobox_frequency_information.currentIndex()
|
||||
abs_id = self.combobox_ABS_name.currentText()
|
||||
|
||||
data_ABS = self.calib_kt.data_ABS[abs_id]["Frequency"].values
|
||||
self.label_pings_per_profile_value.setText(str(stg.nb_pings_averaged_per_profile[self.fileListWidget.currentRow()]
|
||||
[self.combobox_frequency_information.currentIndex()]))
|
||||
self.gridLayout_groupbox_info.addWidget(self.label_pings_per_profile_value, 14, 1, 1, 1, Qt.AlignLeft)
|
||||
|
||||
stg.kt_corrected.clear()
|
||||
for f in range(stg.freq[file_id].shape[0]):
|
||||
freq_array = np.array(
|
||||
[
|
||||
stg.freq[file_id][f] - freq
|
||||
for freq in data_ABS
|
||||
]
|
||||
)
|
||||
|
||||
for f in range(stg.freq[self.fileListWidget.currentRow()].shape[0]):
|
||||
stg.kt_corrected.append(
|
||||
self.calib_kt.data_ABS[abs_id].iloc[
|
||||
self.calib_kt.data_ABS[self.combobox_ABS_name.currentText()].iloc[
|
||||
np.where(
|
||||
np.abs(
|
||||
freq_array
|
||||
) == np.min(
|
||||
np.abs(
|
||||
freq_array
|
||||
)
|
||||
)
|
||||
np.abs(np.array([stg.freq[self.fileListWidget.currentRow()][f] - l for l in
|
||||
self.calib_kt.data_ABS[self.combobox_ABS_name.currentText()][
|
||||
self.calib_kt.data_ABS[
|
||||
self.combobox_ABS_name.currentText()].columns[0]].values]))
|
||||
==
|
||||
np.min(np.abs(np.array([stg.freq[self.fileListWidget.currentRow()][f] - l for l in
|
||||
self.calib_kt.data_ABS[self.combobox_ABS_name.currentText()][
|
||||
self.calib_kt.data_ABS[
|
||||
self.combobox_ABS_name.currentText()].columns[
|
||||
0]].values])
|
||||
))
|
||||
)[0][0]
|
||||
][1]
|
||||
)
|
||||
][1])
|
||||
|
||||
self.lineEdit_kt.setText(
|
||||
str("%.4f" % stg.kt_corrected[freq_id])
|
||||
)
|
||||
|
||||
self.lineEdit_kt.setText(str("%.4f" % stg.kt_corrected[self.combobox_frequency_information.currentIndex()]))
|
||||
self.lineEdit_kt.setEnabled(True)
|
||||
self.lineEdit_kt.returnPressed.connect(self.kt_value)
|
||||
|
||||
self.lineEdit_rx.setText(
|
||||
str("%.2f" % stg.gain_rx[file_id][freq_id])
|
||||
)
|
||||
self.lineEdit_rx.setText(str("%.2f" % stg.gain_rx[self.fileListWidget.currentRow()][self.combobox_frequency_information.currentIndex()]))
|
||||
self.lineEdit_rx.setEnabled(False)
|
||||
self.checkbox_rx.stateChanged.connect(
|
||||
self.activate_unactivate_spinbox_rx
|
||||
)
|
||||
self.checkbox_rx.stateChanged.connect(self.activate_unactivate_spinbox_rx)
|
||||
self.lineEdit_rx.returnPressed.connect(self.gain_rx_value)
|
||||
|
||||
self.lineEdit_tx.setText(str("%.2f" % stg.gain_tx[file_id][freq_id]))
|
||||
self.lineEdit_tx.setText(str("%.2f" % stg.gain_tx[self.fileListWidget.currentRow()][self.combobox_frequency_information.currentIndex()]))
|
||||
self.lineEdit_tx.setEnabled(False)
|
||||
self.checkbox_tx.stateChanged.connect(
|
||||
self.activate_unactivate_spinbox_tx
|
||||
)
|
||||
self.checkbox_tx.stateChanged.connect(self.activate_unactivate_spinbox_tx)
|
||||
self.lineEdit_tx.returnPressed.connect(self.gain_tx_value)
|
||||
|
||||
def combobox_frequency_information_update(self):
|
||||
if self.fileListWidget.count() <= 0:
|
||||
return
|
||||
if self.fileListWidget.count() > 0:
|
||||
|
||||
file_id = self.fileListWidget.currentRow()
|
||||
freq_id = self.combobox_frequency_information.currentIndex()
|
||||
if stg.water_attenuation[self.fileListWidget.currentRow()]:
|
||||
|
||||
if stg.water_attenuation[file_id]:
|
||||
self.lineEdit_sound_attenuation.setText(
|
||||
str(
|
||||
"%.6f"
|
||||
% stg.water_attenuation[file_id][freq_id]
|
||||
)
|
||||
)
|
||||
str("%.6f" % stg.water_attenuation[self.fileListWidget.currentRow()][
|
||||
self.combobox_frequency_information.currentIndex()]))
|
||||
|
||||
self.label_profiles_value.clear()
|
||||
self.gridLayout_groupbox_info.removeWidget(
|
||||
self.label_profiles_value
|
||||
)
|
||||
self.label_profiles_value.setText(
|
||||
str(
|
||||
stg.nb_profiles[file_id][freq_id]
|
||||
)
|
||||
)
|
||||
self.gridLayout_groupbox_info.addWidget(
|
||||
self.label_profiles_value,
|
||||
8, 1, 1, 1, Qt.AlignLeft
|
||||
)
|
||||
self.gridLayout_groupbox_info.removeWidget(self.label_profiles_value)
|
||||
self.label_profiles_value.setText(str(stg.nb_profiles[self.fileListWidget.currentRow()]
|
||||
[self.combobox_frequency_information.currentIndex()]))
|
||||
self.gridLayout_groupbox_info.addWidget(self.label_profiles_value, 8, 1, 1, 1, Qt.AlignLeft)
|
||||
|
||||
self.label_profiles_per_sec_value.clear()
|
||||
self.label_profiles_per_sec_value.setText(
|
||||
str(
|
||||
stg.nb_profiles_per_sec[file_id][freq_id]
|
||||
) + " Hz"
|
||||
)
|
||||
self.gridLayout_groupbox_info.addWidget(
|
||||
self.label_profiles_per_sec_value,
|
||||
9, 1, 1, 1, Qt.AlignLeft
|
||||
)
|
||||
str(stg.nb_profiles_per_sec[self.fileListWidget.currentRow()]
|
||||
[self.combobox_frequency_information.currentIndex()]) + " Hz")
|
||||
self.gridLayout_groupbox_info.addWidget(self.label_profiles_per_sec_value, 9, 1, 1, 1, Qt.AlignLeft)
|
||||
|
||||
self.label_cells_value.clear()
|
||||
self.label_cells_value.setText(
|
||||
str(
|
||||
stg.nb_cells[file_id][freq_id]
|
||||
)
|
||||
)
|
||||
self.gridLayout_groupbox_info.addWidget(
|
||||
self.label_cells_value,
|
||||
10, 1, 1, 1, Qt.AlignLeft
|
||||
)
|
||||
self.label_cells_value.setText(str(stg.nb_cells[self.fileListWidget.currentRow()]
|
||||
[self.combobox_frequency_information.currentIndex()]))
|
||||
self.gridLayout_groupbox_info.addWidget(self.label_cells_value, 10, 1, 1, 1, Qt.AlignLeft)
|
||||
|
||||
self.label_cell_size_value.clear()
|
||||
self.gridLayout_groupbox_info.removeWidget(self.label_cell_size_value)
|
||||
self.label_cell_size_value.setText(
|
||||
str(
|
||||
100 * round(stg.cell_size[file_id][freq_id], 3)
|
||||
) + " cm"
|
||||
)
|
||||
self.gridLayout_groupbox_info.addWidget(
|
||||
self.label_cell_size_value,
|
||||
11, 1, 1, 1, Qt.AlignLeft
|
||||
)
|
||||
str(100 * round(stg.cell_size[self.fileListWidget.currentRow()]
|
||||
[self.combobox_frequency_information.currentIndex()], 3)) + " cm")
|
||||
self.gridLayout_groupbox_info.addWidget(self.label_cell_size_value, 11, 1, 1, 1, Qt.AlignLeft)
|
||||
|
||||
self.label_pulse_length_value.clear()
|
||||
self.label_pulse_length_value.setText(
|
||||
str(
|
||||
round(stg.pulse_length[file_id][freq_id], 6)
|
||||
) + " sec"
|
||||
)
|
||||
self.gridLayout_groupbox_info.addWidget(
|
||||
self.label_pulse_length_value,
|
||||
12, 1, 1, 1, Qt.AlignLeft
|
||||
)
|
||||
str(round(stg.pulse_length[self.fileListWidget.currentRow()]
|
||||
[self.combobox_frequency_information.currentIndex()], 6)) + " sec")
|
||||
self.gridLayout_groupbox_info.addWidget(self.label_pulse_length_value, 12, 1, 1, 1, Qt.AlignLeft)
|
||||
|
||||
self.label_pings_per_sec_value.clear()
|
||||
self.label_pings_per_sec_value.setText(
|
||||
str(
|
||||
stg.nb_pings_per_sec[file_id][freq_id]
|
||||
) + " Hz"
|
||||
)
|
||||
self.gridLayout_groupbox_info.addWidget(
|
||||
self.label_pings_per_sec_value,
|
||||
13, 1, 1, 1, Qt.AlignLeft
|
||||
)
|
||||
self.label_pings_per_sec_value.setText(str(stg.nb_pings_per_sec[self.fileListWidget.currentRow()]
|
||||
[self.combobox_frequency_information.currentIndex()]) + " Hz")
|
||||
self.gridLayout_groupbox_info.addWidget(self.label_pings_per_sec_value, 13, 1, 1, 1, Qt.AlignLeft)
|
||||
|
||||
self.label_pings_per_profile_value.clear()
|
||||
self.label_pings_per_profile_value.setText(
|
||||
str(stg.nb_pings_averaged_per_profile[file_id][freq_id])
|
||||
)
|
||||
self.gridLayout_groupbox_info.addWidget(
|
||||
self.label_pings_per_profile_value,
|
||||
14, 1, 1, 1, Qt.AlignLeft
|
||||
)
|
||||
str(stg.nb_pings_averaged_per_profile[self.fileListWidget.currentRow()]
|
||||
[self.combobox_frequency_information.currentIndex()]))
|
||||
self.gridLayout_groupbox_info.addWidget(self.label_pings_per_profile_value, 14, 1, 1, 1, Qt.AlignLeft)
|
||||
|
||||
if self.checkbox_kt.isChecked():
|
||||
if self.combobox_frequency_information.count() > 0:
|
||||
self.lineEdit_kt.setText(
|
||||
str("%.4f" % stg.kt_corrected[freq_id])
|
||||
)
|
||||
self.lineEdit_kt.setText(str("%.4f" % stg.kt_corrected[self.combobox_frequency_information.currentIndex()]))
|
||||
else:
|
||||
self.lineEdit_kt.setText(str("%.4f" % stg.kt_read[freq_id]))
|
||||
self.lineEdit_kt.setText(str("%.4f" % stg.kt_read[self.combobox_frequency_information.currentIndex()]))
|
||||
|
||||
self.lineEdit_rx.setText(
|
||||
str(stg.gain_rx[file_id][freq_id])
|
||||
)
|
||||
self.lineEdit_rx.setText(str(stg.gain_rx[self.fileListWidget.currentRow()][
|
||||
self.combobox_frequency_information.currentIndex()]))
|
||||
|
||||
self.lineEdit_tx.setText(str(stg.gain_tx[file_id][freq_id]))
|
||||
self.lineEdit_tx.setText(str(stg.gain_tx[self.fileListWidget.currentRow()][
|
||||
self.combobox_frequency_information.currentIndex()]))
|
||||
|
||||
def activate_unactivate_spinbox_kt(self):
|
||||
freq_id = self.combobox_frequency_information.currentIndex()
|
||||
|
||||
if self.checkbox_kt.isChecked():
|
||||
self.lineEdit_kt.setEnabled(True)
|
||||
if stg.kt_corrected:
|
||||
self.lineEdit_kt.setText(str("%.4f" % stg.kt_corrected[freq_id]))
|
||||
self.lineEdit_kt.setText(str("%.4f" % stg.kt_corrected[self.combobox_frequency_information.currentIndex()]))
|
||||
else:
|
||||
self.lineEdit_kt.setDisabled(True)
|
||||
if stg.kt_read:
|
||||
self.lineEdit_kt.setText(str("%.4f" % stg.kt_read[freq_id]))
|
||||
self.lineEdit_kt.setText(str("%.4f" % stg.kt_read[self.combobox_frequency_information.currentIndex()]))
|
||||
|
||||
def activate_unactivate_spinbox_rx(self):
|
||||
if self.checkbox_rx.isChecked():
|
||||
|
|
@ -1972,48 +1808,33 @@ class AcousticDataTab(QWidget):
|
|||
self.lineEdit_tx.setDisabled(True)
|
||||
|
||||
def kt_value(self):
|
||||
if self.fileListWidget.count() <= 0:
|
||||
return
|
||||
|
||||
if not self.checkbox_kt.isChecked():
|
||||
return
|
||||
|
||||
freq_id = self.combobox_frequency_information.currentIndex()
|
||||
if self.fileListWidget.count() > 0:
|
||||
if self.checkbox_kt.isChecked():
|
||||
|
||||
if findall(r",", self.lineEdit_kt.text()):
|
||||
stg.kt_corrected[freq_id] = (
|
||||
float(self.lineEdit_kt.text().replace(',', '.'))
|
||||
)
|
||||
self.lineEdit_kt.setText(
|
||||
"%.4f" % float(
|
||||
self.lineEdit_kt.text().replace(',', '.')
|
||||
)
|
||||
)
|
||||
stg.kt_corrected[self.combobox_frequency_information.currentIndex()] = (
|
||||
float(self.lineEdit_kt.text().replace(',', '.')))
|
||||
self.lineEdit_kt.setText("%.4f" % float(self.lineEdit_kt.text().replace(',', '.')))
|
||||
else:
|
||||
stg.kt_corrected[freq_id] = (
|
||||
float(self.lineEdit_kt.text())
|
||||
)
|
||||
stg.kt_corrected[self.combobox_frequency_information.currentIndex()] = (
|
||||
float(self.lineEdit_kt.text()))
|
||||
self.lineEdit_kt.setText("%.4f" % float(self.lineEdit_kt.text()))
|
||||
|
||||
def gain_rx_value(self):
|
||||
freq_id = self.combobox_frequency_information.currentIndex()
|
||||
|
||||
if self.fileListWidget.count() > 0:
|
||||
stg.gain_rx[self.fileListWidget.currentRow()][freq_id] = (
|
||||
float(self.lineEdit_rx.text())
|
||||
)
|
||||
stg.gain_rx[self.fileListWidget.currentRow()][self.combobox_frequency_information.currentIndex()] = (
|
||||
float(self.lineEdit_rx.text()))
|
||||
|
||||
|
||||
def gain_tx_value(self):
|
||||
freq_id = self.combobox_frequency_information.currentIndex()
|
||||
|
||||
if self.fileListWidget.count() > 0:
|
||||
stg.gain_tx[self.fileListWidget.currentRow()][freq_id] = (
|
||||
float(self.lineEdit_tx.text())
|
||||
)
|
||||
stg.gain_tx[self.fileListWidget.currentRow()][self.combobox_frequency_information.currentIndex()] = (
|
||||
float(self.lineEdit_tx.text()))
|
||||
|
||||
def fill_table(self):
|
||||
|
||||
if self.fileListWidget.currentRow() != -1:
|
||||
file_id = self.fileListWidget.currentRow()
|
||||
|
||||
header_list = []
|
||||
header_list.clear()
|
||||
|
|
@ -2024,37 +1845,19 @@ class AcousticDataTab(QWidget):
|
|||
header_list.append("BS - " + freq_value)
|
||||
|
||||
if freq_ind == 0:
|
||||
table_data = np.vstack(
|
||||
(
|
||||
np.vstack(
|
||||
(
|
||||
stg.time_reshape[file_id][:, freq_ind],
|
||||
stg.depth_reshape[file_id][:, freq_ind]
|
||||
)
|
||||
),
|
||||
stg.BS_raw_data_reshape[file_id][:, freq_ind]
|
||||
)
|
||||
)
|
||||
table_data = np.vstack((np.vstack((stg.time_reshape[self.fileListWidget.currentRow()][:, freq_ind],
|
||||
stg.depth_reshape[self.fileListWidget.currentRow()][:, freq_ind])),
|
||||
stg.BS_raw_data_reshape[self.fileListWidget.currentRow()][:, freq_ind]))
|
||||
|
||||
else:
|
||||
table_data = np.vstack((
|
||||
table_data,
|
||||
np.vstack(
|
||||
(
|
||||
np.vstack(
|
||||
(
|
||||
stg.time_reshape[file_id][:, freq_ind],
|
||||
stg.depth_reshape[file_id][:, freq_ind]
|
||||
)
|
||||
),
|
||||
stg.BS_raw_data_reshape[file_id][:, freq_ind]
|
||||
)
|
||||
)
|
||||
table_data = np.vstack((table_data,
|
||||
np.vstack((np.vstack((stg.time_reshape[self.fileListWidget.currentRow()][:, freq_ind],
|
||||
stg.depth_reshape[self.fileListWidget.currentRow()][:, freq_ind])),
|
||||
stg.BS_raw_data_reshape[self.fileListWidget.currentRow()][:, freq_ind]))
|
||||
))
|
||||
|
||||
stg.DataFrame_acoustic = pd.DataFrame(None)
|
||||
stg.DataFrame_acoustic = pd.DataFrame(
|
||||
data=table_data.transpose(), columns=header_list
|
||||
)
|
||||
stg.DataFrame_acoustic = pd.DataFrame(data=table_data.transpose(), columns=header_list)
|
||||
|
||||
self.tableModel = TableModel(stg.DataFrame_acoustic)
|
||||
self.tableView.setModel(self.tableModel)
|
||||
|
|
@ -2080,45 +1883,27 @@ class AcousticDataTab(QWidget):
|
|||
''' tmin and tmax are filled with min and max of time when data are uploaded and
|
||||
double slider of time are updated with these values '''
|
||||
|
||||
if self.fileListWidget.currentRow() == -1:
|
||||
return
|
||||
if self.fileListWidget.currentRow() != -1:
|
||||
|
||||
file_id = self.fileListWidget.currentRow()
|
||||
# --- tmim / tmax ---
|
||||
tmin_indice = np.where(np.abs(stg.time[self.fileListWidget.currentRow()][0, :] - np.nanmin(
|
||||
stg.time[self.fileListWidget.currentRow()][0, :])) ==
|
||||
np.nanmin(np.abs(stg.time[self.fileListWidget.currentRow()][0, :] - np.nanmin(
|
||||
stg.time[self.fileListWidget.currentRow()][0, :]))))[0][0]
|
||||
tmin_value = np.round(np.nanmin(stg.time[self.fileListWidget.currentRow()][0, :]), 2)
|
||||
stg.tmin[self.fileListWidget.currentRow()] = (tmin_indice, tmin_value)
|
||||
|
||||
tmin_indice = np.where(
|
||||
np.abs(
|
||||
stg.time[file_id][0, :] - np.nanmin(stg.time[file_id][0, :])
|
||||
) == np.nanmin(
|
||||
np.abs(
|
||||
stg.time[file_id][0, :]
|
||||
- np.nanmin(stg.time[file_id][0, :])
|
||||
)
|
||||
)
|
||||
)[0][0]
|
||||
|
||||
tmin_value = np.round(
|
||||
np.nanmin(stg.time[file_id][0, :]), 2
|
||||
)
|
||||
|
||||
stg.tmin[file_id] = (tmin_indice, tmin_value)
|
||||
|
||||
tmax_indice = np.where(
|
||||
np.abs(
|
||||
stg.time[file_id][0, :] - np.nanmax(stg.time[file_id][0, :])
|
||||
) == np.nanmin(
|
||||
np.abs(
|
||||
stg.time[file_id][0, :]
|
||||
- np.nanmax(stg.time[file_id][0, :])
|
||||
)
|
||||
)
|
||||
)[0][0]
|
||||
|
||||
tmax_value = np.round(np.nanmax(stg.time[file_id][0, :]), 2)
|
||||
stg.tmax[file_id] = (tmax_indice + 1, tmax_value)
|
||||
tmax_indice = np.where(np.abs(stg.time[self.fileListWidget.currentRow()][0, :] - np.nanmax(
|
||||
stg.time[self.fileListWidget.currentRow()][0, :])) ==
|
||||
np.nanmin(np.abs(stg.time[self.fileListWidget.currentRow()][0, :] - np.nanmax(
|
||||
stg.time[self.fileListWidget.currentRow()][0, :]))))[0][0]
|
||||
tmax_value = np.round(np.nanmax(stg.time[self.fileListWidget.currentRow()][0, :]), 2)
|
||||
stg.tmax[self.fileListWidget.currentRow()] = (tmax_indice + 1, tmax_value)
|
||||
|
||||
self.set_range_for_time_boundaries_option()
|
||||
|
||||
def set_range_for_time_boundaries_option(self):
|
||||
|
||||
self.label_time_min.clear()
|
||||
self.label_time_min.setText("%.5s" % str(stg.time[self.fileListWidget.currentRow()][0, 0]))
|
||||
|
||||
|
|
@ -2288,82 +2073,58 @@ class AcousticDataTab(QWidget):
|
|||
"-" + str("%.5s" % stg.depth[self.fileListWidget.currentRow()][0, 0]))
|
||||
|
||||
def plot_backscattered_acoustic_signal_recording(self):
|
||||
if self.fileListWidget.count() <= 0:
|
||||
return
|
||||
|
||||
layout = self.verticalLayout_groupbox_transect_2Dplot_raw_BS_data
|
||||
file_id = self.fileListWidget.currentRow()
|
||||
freq_id = self.combobox_frequency_profile.currentIndex()
|
||||
if self.fileListWidget.count() > 0:
|
||||
|
||||
layout.removeWidget(self.toolbar_BS)
|
||||
layout.removeWidget(self.scroll_BS)
|
||||
self.verticalLayout_groupbox_transect_2Dplot_raw_BS_data.removeWidget(self.toolbar_BS)
|
||||
self.verticalLayout_groupbox_transect_2Dplot_raw_BS_data.removeWidget(self.scroll_BS)
|
||||
|
||||
self.fig_BS, self.axis_BS = plt.subplots(
|
||||
nrows=stg.freq[file_id].shape[0],
|
||||
ncols=1, sharex=False, sharey=False,
|
||||
layout="constrained"
|
||||
)
|
||||
self.fig_BS, self.axis_BS = plt.subplots(nrows=stg.freq[self.fileListWidget.currentRow()].shape[0], ncols=1,
|
||||
sharex=False, sharey=False, layout="constrained")
|
||||
self.canvas_BS = FigureCanvas(self.fig_BS)
|
||||
self.toolbar_BS = NavigationToolBar(self.canvas_BS, self)
|
||||
|
||||
self.scroll_BS.setWidget(self.canvas_BS)
|
||||
|
||||
layout.addWidget(self.toolbar_BS)
|
||||
layout.addWidget(self.scroll_BS)
|
||||
self.verticalLayout_groupbox_transect_2Dplot_raw_BS_data.addWidget(self.toolbar_BS)
|
||||
self.verticalLayout_groupbox_transect_2Dplot_raw_BS_data.addWidget(self.scroll_BS)
|
||||
|
||||
for f, _ in enumerate(stg.freq[file_id]):
|
||||
val_min = np.nanmin(stg.BS_raw_data[file_id][f, :, :])
|
||||
val_max = np.nanmax(stg.BS_raw_data[file_id][f, :, :])
|
||||
for f, _ in enumerate(stg.freq[self.fileListWidget.currentRow()]):
|
||||
|
||||
val_min = np.nanmin(stg.BS_raw_data[self.fileListWidget.currentRow()][f, :, :])
|
||||
val_max = np.nanmax(stg.BS_raw_data[self.fileListWidget.currentRow()][f, :, :])
|
||||
if val_min == 0:
|
||||
val_min = 1e-5
|
||||
|
||||
if self.combobox_ABS_system_choice.currentIndex() == 1:
|
||||
pcm = self.axis_BS[f].pcolormesh(
|
||||
stg.time[file_id][f, :],
|
||||
-stg.depth[file_id][f, :],
|
||||
stg.BS_raw_data[file_id][f, :, :],
|
||||
cmap='viridis',
|
||||
norm=LogNorm(vmin=val_min, vmax=val_max)
|
||||
)
|
||||
|
||||
pcm = self.axis_BS[f].pcolormesh(stg.time[self.fileListWidget.currentRow()][f, :],
|
||||
-stg.depth[self.fileListWidget.currentRow()][f, :],
|
||||
stg.BS_raw_data[self.fileListWidget.currentRow()][f, :, :],
|
||||
cmap='viridis', norm=LogNorm(vmin=val_min, vmax=val_max))
|
||||
|
||||
elif self.combobox_ABS_system_choice.currentIndex() == 2:
|
||||
pcm = self.axis_BS[f].pcolormesh(
|
||||
stg.time[file_id][f, :],
|
||||
-stg.depth[file_id][f, :],
|
||||
np.log(stg.BS_raw_data[file_id][f, :, :]),
|
||||
cmap='Blues'
|
||||
)
|
||||
pcm = self.axis_BS[f].pcolormesh(stg.time[self.fileListWidget.currentRow()][f, :],
|
||||
-stg.depth[self.fileListWidget.currentRow()][f, :],
|
||||
np.log(stg.BS_raw_data[self.fileListWidget.currentRow()][f, :, :]),
|
||||
cmap='Blues')
|
||||
|
||||
self.axis_BS[f].text(
|
||||
1, .70, stg.freq_text[file_id][f],
|
||||
fontsize=14, fontweight='bold', fontname="DejaVu Sans",
|
||||
c="black", alpha=0.5,
|
||||
self.axis_BS[f].text(1, .70, stg.freq_text[self.fileListWidget.currentRow()][f],
|
||||
fontsize=14, fontweight='bold', fontname="Ubuntu", c="black", alpha=0.5,
|
||||
horizontalalignment='right', verticalalignment='bottom',
|
||||
transform=self.axis_BS[f].transAxes
|
||||
)
|
||||
transform=self.axis_BS[f].transAxes)
|
||||
|
||||
# --- Plot red solid line on transect to visualize position of
|
||||
# --- plotted profile ---
|
||||
self.axis_BS[freq_id].plot(
|
||||
stg.time[file_id][
|
||||
freq_id, self.slider.value() - 1
|
||||
]
|
||||
* np.ones(stg.depth[file_id].shape[1]),
|
||||
-stg.depth[file_id][freq_id, :],
|
||||
color='red', linestyle="solid", linewidth=2
|
||||
)
|
||||
# --- Plot red solid line on transect to visualize position of plotted profile ---
|
||||
self.axis_BS[self.combobox_frequency_profile.currentIndex()].plot(
|
||||
stg.time[self.fileListWidget.currentRow()][self.combobox_frequency_profile.currentIndex(),
|
||||
self.slider.value() - 1] * np.ones(stg.depth[self.fileListWidget.currentRow()].shape[1]),
|
||||
-stg.depth[self.fileListWidget.currentRow()][self.combobox_frequency_profile.currentIndex(), :],
|
||||
color='red', linestyle="solid", linewidth=2)
|
||||
|
||||
self.fig_BS.supxlabel('Time (sec)', fontsize=10)
|
||||
self.fig_BS.supylabel('Depth (m)', fontsize=10)
|
||||
|
||||
cbar = self.fig_BS.colorbar(
|
||||
pcm, ax=self.axis_BS[:],
|
||||
shrink=1, location='right'
|
||||
)
|
||||
|
||||
cbar.set_label(
|
||||
label='Acoustic backscatter signal (V)',
|
||||
rotation=270, labelpad=10
|
||||
)
|
||||
cbar = self.fig_BS.colorbar(pcm, ax=self.axis_BS[:], shrink=1, location='right')
|
||||
cbar.set_label(label='Acoustic backscatter signal (V)', rotation=270, labelpad=10)
|
||||
self.fig_BS.canvas.draw_idle()
|
||||
|
||||
def update_plot_backscattered_acoustic_signal_recording(self):
|
||||
|
|
@ -2480,7 +2241,7 @@ class AcousticDataTab(QWidget):
|
|||
color='black', linewidth=1, linestyle="solid")
|
||||
|
||||
self.axis_BS[f].text(1, .70, stg.freq_text[self.fileListWidget.currentRow()][f],
|
||||
fontsize=14, fontweight='bold', fontname="DejaVu Sans", c="black", alpha=0.5,
|
||||
fontsize=14, fontweight='bold', fontname="Ubuntu", c="black", alpha=0.5,
|
||||
horizontalalignment='right', verticalalignment='bottom',
|
||||
transform=self.axis_BS[f].transAxes)
|
||||
|
||||
|
|
@ -2495,8 +2256,7 @@ class AcousticDataTab(QWidget):
|
|||
|
||||
self.combobox_frequency_profile.currentIndexChanged.connect(self.update_plot_profile)
|
||||
self.combobox_frequency_profile.currentIndexChanged.connect(
|
||||
self.update_plot_backscattered_acoustic_signal_recording
|
||||
)
|
||||
self.update_plot_backscattered_acoustic_signal_recording)
|
||||
|
||||
self.slider.setMaximum(stg.time[self.fileListWidget.currentRow()].shape[1])
|
||||
|
||||
|
|
@ -2522,7 +2282,7 @@ class AcousticDataTab(QWidget):
|
|||
-stg.depth[self.fileListWidget.currentRow()][self.combobox_frequency_profile.currentIndex(), :],
|
||||
linestyle='solid', color='k', linewidth=1)
|
||||
self.axis_profile.text(.95, .05, stg.freq_text[self.fileListWidget.currentRow()][self.combobox_frequency_profile.currentIndex()],
|
||||
fontsize=10, fontweight='bold', fontname="DejaVu Sans",
|
||||
fontsize=10, fontweight='bold', fontname="Ubuntu",
|
||||
fontstyle="normal", c="black", alpha=0.2,
|
||||
horizontalalignment='right', verticalalignment='bottom',
|
||||
transform=self.axis_profile.transAxes)
|
||||
|
|
@ -2581,7 +2341,7 @@ class AcousticDataTab(QWidget):
|
|||
# --- Write frequency on graph ---
|
||||
self.axis_profile.text(.95, .90, stg.freq_text[self.fileListWidget.currentRow()][
|
||||
self.combobox_frequency_profile.currentIndex()],
|
||||
fontsize=14, fontweight='bold', fontname="DejaVu Sans",
|
||||
fontsize=14, fontweight='bold', fontname="Ubuntu",
|
||||
fontstyle="normal", c="black", alpha=0.2,
|
||||
horizontalalignment='right', verticalalignment='bottom',
|
||||
transform=self.axis_profile.transAxes)
|
||||
|
|
@ -2605,7 +2365,7 @@ class AcousticDataTab(QWidget):
|
|||
self.combobox_frequency_profile.currentIndex(), :]))
|
||||
|
||||
self.axis_profile.text(.95, 1 - position_x + 0.05, "River bed",
|
||||
fontsize=10, fontweight='normal', fontname="DejaVu Sans",
|
||||
fontsize=10, fontweight='normal', fontname="Ubuntu",
|
||||
fontstyle="italic", c="red", alpha=0.2,
|
||||
horizontalalignment='right', verticalalignment='bottom',
|
||||
transform=self.axis_profile.transAxes)
|
||||
|
|
@ -2630,7 +2390,7 @@ class AcousticDataTab(QWidget):
|
|||
# --- Write frequency on graph ---
|
||||
self.axis_profile.text(.95, .05, stg.freq_text[self.fileListWidget.currentRow()][
|
||||
self.combobox_frequency_profile.currentIndex()],
|
||||
fontsize=10, fontweight='bold', fontname="DejaVu Sans",
|
||||
fontsize=10, fontweight='bold', fontname="Ubuntu",
|
||||
fontstyle="normal", c="black", alpha=0.2,
|
||||
horizontalalignment='right', verticalalignment='bottom',
|
||||
transform=self.axis_profile.transAxes)
|
||||
|
|
@ -2654,7 +2414,7 @@ class AcousticDataTab(QWidget):
|
|||
self.combobox_frequency_profile.currentIndex(), :]))
|
||||
|
||||
self.axis_profile.text(.95, 1 - position_x + 0.05, "River bed",
|
||||
fontsize=10, fontweight='normal', fontname="DejaVu Sans",
|
||||
fontsize=10, fontweight='normal', fontname="Ubuntu",
|
||||
fontstyle="italic", c="red", alpha=0.2,
|
||||
horizontalalignment='right', verticalalignment='bottom',
|
||||
transform=self.axis_profile.transAxes)
|
||||
|
|
@ -2838,7 +2598,7 @@ class AcousticDataTab(QWidget):
|
|||
color='black', linewidth=1, linestyle="solid")
|
||||
|
||||
self.axis_BS[f].text(1, .70, stg.freq_text[self.fileListWidget.currentRow()][f],
|
||||
fontsize=14, fontweight='bold', fontname="DejaVu Sans", c="black", alpha=0.5,
|
||||
fontsize=14, fontweight='bold', fontname="Ubuntu", c="black", alpha=0.5,
|
||||
horizontalalignment='right', verticalalignment='bottom',
|
||||
transform=self.axis_BS[f].transAxes)
|
||||
|
||||
|
|
@ -2966,7 +2726,7 @@ class AcousticDataTab(QWidget):
|
|||
color='black', linewidth=1, linestyle="solid")
|
||||
|
||||
self.axis_BS[f].text(1, .70, stg.freq_text[self.fileListWidget.currentRow()][f],
|
||||
fontsize=14, fontweight='bold', fontname="DejaVu Sans", c="black",
|
||||
fontsize=14, fontweight='bold', fontname="Ubuntu", c="black",
|
||||
alpha=0.5,
|
||||
horizontalalignment='right', verticalalignment='bottom',
|
||||
transform=self.axis_BS[f].transAxes)
|
||||
|
|
|
|||
|
|
@ -147,14 +147,12 @@ class Ui_MainWindow(object):
|
|||
icon6.addPixmap(QtGui.QPixmap("icons/en.png"), QtGui.QIcon.Normal, QtGui.QIcon.Off)
|
||||
self.actionEnglish.setIcon(icon6)
|
||||
self.actionEnglish.setObjectName("actionEnglish")
|
||||
self.actionEnglish.setEnabled(False)
|
||||
|
||||
self.actionFrench = QtWidgets.QAction(self.mainwindow)
|
||||
icon7 = QtGui.QIcon()
|
||||
icon7.addPixmap(QtGui.QPixmap("icons/fr.png"), QtGui.QIcon.Normal, QtGui.QIcon.Off)
|
||||
self.actionFrench.setIcon(icon7)
|
||||
self.actionFrench.setObjectName("actionFrench")
|
||||
self.actionFrench.setEnabled(False)
|
||||
|
||||
self.action_ABSCalibrationConstant = QtWidgets.QAction(self.mainwindow)
|
||||
self.action_ABSCalibrationConstant.setText("ABS constant calibration kt")
|
||||
|
|
|
|||
Loading…
Reference in New Issue