debug

src/Solver/AdisTS.py

@@ -880,29 +880,29 @@ class AdisTSwc(AdisTS):
                                                         ) - k)
                 data = np.fromfile(f, dtype=np.int32, count=1)  # (end)
 
-                # fifth line (useless)
+            # fifth line (useless)
+            data = np.fromfile(f, dtype=np.int32, count=1)  # (start)
+            zmin_OLD = np.fromfile(f, dtype=np.float32, count=1)[0]
+            data = np.fromfile(f, dtype=np.int32, count=1)  # (end)
+            # sixth line
+            zf = np.zeros(ismax, dtype=np.float32)
+            z = np.zeros(ismax * 3, dtype=np.float32)
+            for k in range(0, ismax, kbl):
                 data = np.fromfile(f, dtype=np.int32, count=1)  # (start)
-                zmin_OLD = np.fromfile(f, dtype=np.float32, count=1)[0]
+                z[3 * k:3 * min(k + kbl, ismax)] = \
+                    np.fromfile(f,
+                                dtype=np.float32,
+                                count=3 * (min(k + kbl, ismax) - k)
+                                )
+                # z[i*3+1] and z[i*3+2] are useless
                 data = np.fromfile(f, dtype=np.int32, count=1)  # (end)
-                # sixth line
-                zf = np.zeros(ismax, dtype=np.float32)
-                z = np.zeros(ismax * 3, dtype=np.float32)
-                for k in range(0, ismax, kbl):
-                    data = np.fromfile(f, dtype=np.int32, count=1)  # (start)
-                    z[3 * k:3 * min(k + kbl, ismax)] = \
-                        np.fromfile(f,
-                                    dtype=np.float32,
-                                    count=3 * (min(k + kbl, ismax) - k)
-                                    )
-                    # z[i*3+1] and z[i*3+2] are useless
-                    data = np.fromfile(f, dtype=np.int32, count=1)  # (end)
-                zf = [z[i * 3] for i in range(ismax)]
-                # seventh line (useless)
-                for k in range(0, ismax, kbl):
-                    data = np.fromfile(f, dtype=np.int32, count=1)  # (start)
-                    zero = np.fromfile(f, dtype=np.int32, count=ismax)
-                    data = np.fromfile(f, dtype=np.int32, count=1)  # (end)
-                # end header
+            zf = [z[i * 3] for i in range(ismax)]
+            # seventh line (useless)
+            for k in range(0, ismax, kbl):
+                data = np.fromfile(f, dtype=np.int32, count=1)  # (start)
+                zero = np.fromfile(f, dtype=np.int32, count=ismax)
+                data = np.fromfile(f, dtype=np.int32, count=1)  # (end)
+            # end header
 
         def ip_to_r(i):
             return iprofiles[
@@ -924,6 +924,7 @@ class AdisTSwc(AdisTS):
         for file_bin in path_files:
             key_pol = os.path.basename(file_bin)[0:-4]
             data_tmp[key_pol] = {}
+            logger.info(f"read_bin: Start reading '{file_bin}' ...")
             with open(file_bin, 'rb') as f:
                 # header
                 # first line
@@ -975,7 +976,7 @@ class AdisTSwc(AdisTS):
                 # seventh line (useless)
                 for k in range(0, ismax, kbl):
                     data = np.fromfile(f, dtype=np.int32, count=1)  # (start)
-                    zero = np.fromfile(f, dtype=np.int32, count=ismax)
+                    zero = np.fromfile(f, dtype=np.int32, count=min(k + kbl, ismax) - k)
                     data = np.fromfile(f, dtype=np.int32, count=1)  # (end)
                 # end header
                 # data
@@ -1006,7 +1007,6 @@ class AdisTSwc(AdisTS):
         for r, reach in enumerate(reachs):
             for i in range(is1[r]-1, is2[r]):
                 p_i = ip_to_ri(reach, i)
-
                 for t_data in timestamps_keys:
                     pol_view = []
                     for pol in pollutants_keys:

src/Solver/Mage.py

@@ -19,6 +19,7 @@
 import os
 import logging
 import numpy as np
+import time
 from functools import reduce
 
 from tools import timer, trace, logger_exception
@@ -946,6 +947,7 @@ class Mage8(Mage):
     @timer
     def read_bin(self, study, fname, results, qlog=None, name="0"):
         logger.info(f"read_bin: Start reading '{fname}' ...")
+        start = time.time()
 
         with mage_file_open(fname, "r") as f:
             def newline(): return np.fromfile(f, dtype=np.int32, count=1)
@@ -1092,8 +1094,7 @@ class Mage8(Mage):
             logger.info(f"compute tab...")
             for r in reachs:
                 for p in r.profiles:
-                    if not p.geometry.tab_up_to_date:
-                        p.geometry.compute_tabulation()
+                    p.geometry.compute_tabulation()
 
             logger.info(f"compute velocily...")
 
@@ -1110,6 +1111,7 @@ class Mage8(Mage):
         results.bufferize("Z")
         results.bufferize("Q")
         results.bufferize("V")
+        logger.info(f"reading time: '{time.time() - start}'")
 
     @timer
     def read_gra(self, study, repertory, results, qlog=None, name="0"):
@@ -1118,6 +1120,7 @@ class Mage8(Mage):
 
         fname = os.path.join(repertory, f"{name}.GRA")
         logger.info(f"read_gra: Start reading '{fname}' ...")
+        start = time.time()
 
         with mage_file_open(fname, "r") as f:
             def newline(): return np.fromfile(f, dtype=np.int32, count=1)
@@ -1313,6 +1316,7 @@ class Mage8(Mage):
 
             results.set("sediment_timestamps", ts)
             logger.info(f"read_gra: ... end with {len(ts)} timestamp read")
+        logger.debug(f"reading time: '{time.time() - start}'")
 
     @timer
     def results(self, study, repertory,