Merge: Results reading optimisation.

AUTHORS

@@ -1,4 +1,4 @@
 Sylvain COULIBALY, INRAE, 2020 - 2022
 Théophile TERRAZ, INRAE, 2022 - 2024
-Pierre-Antoine ROUBY, INRAE, 2023 - 2025
+Pierre-Antoine ROUBY, INRAE, 2023 - 2026
 Dylan JEANNIN, INRAE, 2026

src/Checker/Adists.py

@@ -1,5 +1,5 @@
 # Adists.py -- Pamhyr study checkers
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Checker/Checker.py

@@ -1,5 +1,5 @@
 # Checker.py -- Pamhyr abstract checker class
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Checker/Mage.py

@@ -1,5 +1,5 @@
 # Mage.py -- Pamhyr MAGE checkers
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Checker/Study.py

@@ -1,5 +1,5 @@
 # Study.py -- Pamhyr study checkers
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Meshing/AMeshingTool.py

@@ -1,5 +1,5 @@
 # AMeshingTool.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Meshing/Internal.py

@@ -1,5 +1,5 @@
 # Internal.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Meshing/Mage.py

@@ -1,5 +1,5 @@
 # Mage.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Meshing/__init__.py

@@ -1,5 +1,5 @@
 # __init__.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Meshing/test_Meshing.py

@@ -1,5 +1,5 @@
 # test_Model.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/BoundaryCondition/BoundaryCondition.py

@@ -1,5 +1,5 @@
 # BoundaryCondition.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/BoundaryCondition/BoundaryConditionList.py

@@ -1,5 +1,5 @@
 # BoundaryConditionList.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/BoundaryCondition/BoundaryConditionTypes.py

@@ -1,5 +1,5 @@
 # BoundaryConditionTypes.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/BoundaryConditionsAdisTS/BoundaryConditionAdisTS.py

@@ -1,5 +1,5 @@
 # BoundaryConditionsAdisTS.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/BoundaryConditionsAdisTS/BoundaryConditionsAdisTSList.py

@@ -1,5 +1,5 @@
 # BoundaryConditionsAdisTSList.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/D90AdisTS/D90AdisTS.py

@@ -1,5 +1,5 @@
 # D90AdisTS.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/D90AdisTS/D90AdisTSList.py

@@ -1,5 +1,5 @@
 # D90AdisTSList.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/D90AdisTS/D90AdisTSSpec.py

@@ -1,5 +1,5 @@
 # D90AdisTSSpec.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/DIFAdisTS/DIFAdisTS.py

@@ -1,5 +1,5 @@
 # DIFAdisTS.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/DIFAdisTS/DIFAdisTSList.py

@@ -1,5 +1,5 @@
 # DIFAdisTSList.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/DIFAdisTS/DIFAdisTSSpec.py

@@ -1,5 +1,5 @@
 # DIFAdisTSSpec.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Except.py

@@ -1,5 +1,5 @@
 # Except.py -- Pamhyr model exceptions
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Friction/Friction.py

@@ -1,5 +1,5 @@
 # Friction.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Friction/FrictionList.py

@@ -1,5 +1,5 @@
 # FrictionList.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Geometry/Point.py

@@ -1,5 +1,5 @@
 # Point.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Geometry/PointXY.py

@@ -1,5 +1,5 @@
 # PointXY.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Geometry/PointXYZ.py

@@ -1,5 +1,5 @@
 # PointXYZ.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Geometry/Profile.py

@@ -1,5 +1,5 @@
 # Profile.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Geometry/ProfileXYZ.py

@@ -1,5 +1,5 @@
 # ProfileXYZ.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -91,6 +91,9 @@ class ProfileXYZ(Profile, SQLSubModel):
         self._station = []
         self.station_up_to_date = False
 
+        self._get_water_limits_cache = {}
+        self._get_water_limits_ac_cache = {}
+
     @classmethod
     def _db_create(cls, execute, ext=""):
         execute(f"""
@@ -619,6 +622,7 @@ class ProfileXYZ(Profile, SQLSubModel):
         """
         return [x for x in lst if not np.isnan(x)]
 
+    @timer
     def speed(self, q, z):
         area = self.wet_area(z)
 
@@ -670,6 +674,7 @@ class ProfileXYZ(Profile, SQLSubModel):
             length += line.length
         return length
 
+    @timer
     def compute_wet_area(self, z):
         area = 0.0
         if len(self.tab.L) > 0:
@@ -710,6 +715,7 @@ class ProfileXYZ(Profile, SQLSubModel):
                 if len(line.coords) > 2:
                     poly = geometry.Polygon(line)
                     area += poly.area
+
         return area
 
     def wet_radius(self, z):
@@ -732,6 +738,7 @@ class ProfileXYZ(Profile, SQLSubModel):
         line = geometry.LineString(list(zip(station, zz)))
         return line
 
+    @timer
     def wet_lines(self, z):
         points = self._points
         if len(points) < 3:
@@ -808,7 +815,6 @@ class ProfileXYZ(Profile, SQLSubModel):
         return points
 
     def get_nb_wet_areas(self, z):
-
         n_zones = 0
         points = self._points
         if points[0].z <= z:
@@ -820,10 +826,13 @@ class ProfileXYZ(Profile, SQLSubModel):
 
         return n_zones
 
+    @timer
     def get_all_water_limits_ac(self, z):
         """
         Determine all water limits for z elevation.
         """
+        if z in self._get_water_limits_ac_cache:
+            return self._get_water_limits_ac_cache[z]
 
         points = self._points
         if len(points) < 3:
@@ -856,69 +865,94 @@ class ProfileXYZ(Profile, SQLSubModel):
             logger.error(f"ERROR in get_all_water_limits_ac")
             return [], []
 
-        return start, list(reversed(end))
+        res = start, list(reversed(end))
+        self._get_water_limits_ac_cache[z] = res
 
+        return res
+
+    @timer
     def get_water_limits(self, z):
+        if z in self._get_water_limits_cache:
+            return self._get_water_limits_cache[z]
+
+        v = self.get_water_limits_compute(z)
+
+        return v
+
+    def get_water_limits_compute(self, z):
         """
         Determine left and right limits of water elevation.
         """
-
         # Get the index of first point with elevation lesser than water
         # elevation (for the right and left river side)
-        i_left = -1
+        i_left = next(
-        i_right = -1
+            filter(
+                lambda i: self.point(i).z <= z,
+                range(self.number_points)
+            ),
+            -1
+        )
 
-        for i in range(self.number_points):
+        i_right = next(
-            if self.point(i).z <= z:
+            filter(
-                i_left = i
+                lambda i: self.point(i).z <= z,
-                break
+                reversed(range(self.number_points))
-
+            ),
-        for i in reversed(range(self.number_points)):
+            -1
-            if self.point(i).z <= z:
+        )
-                i_right = i
-                break
 
         # Interpolate points at river left side
         if (i_left > 0):
-            if abs(self.point(i_left - 1).z - self.point(i_left).z) < 1e-20:
+            pi = self.point(i_left)
-                pt_left = self.point(i_left)
+            pim1 = self.point(i_left - 1)
+
+            if abs(pim1.z - pi.z) < 1e-20:
+                pt_left = pi
             else:
-                fact = (z - self.point(i_left).z) / \
+                fact = (z - pi.z) / (pim1.z - pi.z)
-                    (self.point(i_left - 1).z - self.point(i_left).z)
+                x = pi.x + fact * (pim1.x - pi.x)
-                x = self.point(i_left).x + fact * \
+                y = pi.y + fact * (pim1.y - pi.y)
-                    (self.point(i_left - 1).x - self.point(i_left).x)
-                y = self.point(i_left).y + fact * \
-                    (self.point(i_left - 1).y - self.point(i_left).y)
                 pt_left = PointXYZ(x=x, y=y, z=z, name="wl_left")
         else:
             pt_left = self.point(0)
 
         # Interpolate points at river right side
         if (i_right < self.number_points - 1):
-            if abs(self.point(i_right + 1).z - self.point(i_right).z) < 1e-20:
+            pi = self.point(i_right)
-                pt_right = self.point(i_right)
+            pip1 = self.point(i_right + 1)
+
+            if abs(pip1.z - pi.z) < 1e-20:
+                pt_right = pi
             else:
-                fact = (z - self.point(i_right).z) / \
+                fact = (z - pi.z) / (pip1.z - pi.z)
-                    (self.point(i_right + 1).z - self.point(i_right).z)
+                x = pi.x + fact * (pip1.x - pi.x)
-                x = self.point(i_right).x + fact * \
+                y = pi.y + fact * (pip1.y - pi.y)
-                    (self.point(i_right + 1).x - self.point(i_right).x)
-                y = self.point(i_right).y + fact * \
-                    (self.point(i_right + 1).y - self.point(i_right).y)
                 pt_right = PointXYZ(x=x, y=y, z=z, name="wl_right")
         else:
             pt_right = self.point(self.number_points - 1)
 
-        return pt_left, pt_right
+        v = (pt_left, pt_right)
 
+        # Put results in cache
+        self._get_water_limits_cache[z] = v
+
+        # Create a generator to improve results data reading speed
+        yield v
+
+    @timer
     def compute_tabulation(self):
         sorted_points = sorted(self._points, key=lambda p: p.z)
+
         self.tab.z = np.array([p.z for p in sorted_points], np.float64)
         self.tab.L = np.zeros(len(self.tab.z), np.float64)
         self.tab.A = np.zeros(len(self.tab.z), np.float64)
+
         for i in range(1, len(self.tab.z)):
             self.tab.L[i] = self.compute_wet_width(self.tab.z[i])
+
             dx = (self.tab.L[i] + self.tab.L[i-1])/2
             dz = self.tab.z[i] - self.tab.z[i-1]
+
             self.tab.A[i] = self.tab.A[i-1] + dz * dx
 
         self.tab_up_to_date = True

src/Model/Geometry/Reach.py

@@ -1,5 +1,5 @@
 # Reach.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Geometry/Vector_1d.py

@@ -1,5 +1,5 @@
 # Vector_1d.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/HydraulicStructures/Basic/HydraulicStructures.py

@@ -1,5 +1,5 @@
 # HydraulicStructures.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/HydraulicStructures/Basic/Types.py

@@ -1,5 +1,5 @@
 # Types.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/HydraulicStructures/Basic/Value.py

@@ -1,5 +1,5 @@
 # Value.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/HydraulicStructures/HydraulicStructures.py

@@ -1,5 +1,5 @@
 # HydraulicStructures.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/HydraulicStructures/HydraulicStructuresList.py

@@ -1,5 +1,5 @@
 # HydraulicStructuresList.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/InitialConditions/InitialConditions.py

@@ -1,5 +1,5 @@
 # InitialConditions.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/InitialConditions/InitialConditionsDict.py

@@ -1,5 +1,5 @@
 # InitialConditionsDict.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/InitialConditionsAdisTS/InitialConditionsAdisTS.py

@@ -1,5 +1,5 @@
 # InitialConditionsAdisTS.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/InitialConditionsAdisTS/InitialConditionsAdisTSList.py

@@ -1,5 +1,5 @@
 # InitialConditionsAdisTSList.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/InitialConditionsAdisTS/InitialConditionsAdisTSSpec.py

@@ -1,5 +1,5 @@
 # InitialConditionsAdisTSSpec.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/LateralContribution/LateralContribution.py

@@ -1,5 +1,5 @@
 # LateralContribution.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/LateralContribution/LateralContributionList.py

@@ -1,5 +1,5 @@
 # LateralContributionList.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/LateralContribution/LateralContributionTypes.py

@@ -1,5 +1,5 @@
 # LateralContributionTypes.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/LateralContributionsAdisTS/LateralContributionAdisTS.py

@@ -1,5 +1,5 @@
 # LateralContributionAdisTS.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/LateralContributionsAdisTS/LateralContributionsAdisTSList.py

@@ -1,5 +1,5 @@
 # LateralContributionsAdisTSList.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Network/Edge.py

@@ -1,5 +1,5 @@
 # Edge.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Network/Graph.py

@@ -1,5 +1,5 @@
 # Graph.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Network/Node.py

@@ -1,5 +1,5 @@
 # Node.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Network/Point.py

@@ -1,5 +1,5 @@
 # Point.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Network/__init__.py

@@ -1,5 +1,5 @@
 # __init__.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Network/test_network.py

@@ -1,5 +1,5 @@
 # test_Network.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/OutputRKAdists/OutputRKAdists.py

@@ -1,5 +1,5 @@
 # OutputRKAdists.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Pollutants/Pollutants.py

@@ -1,5 +1,5 @@
 # Pollutants.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Reservoir/Reservoir.py

@@ -1,5 +1,5 @@
 # Reservoir.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Reservoir/ReservoirList.py

@@ -1,5 +1,5 @@
 # ReservoirList.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Results/Results.py

@@ -1,5 +1,5 @@
 # Results.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -22,6 +22,8 @@ import numpy as np
 from copy import deepcopy
 from datetime import datetime
 
+from tools import timer
+
 from Model.Scenario import Scenario
 from Model.Tools.PamhyrDB import SQLSubModel
 from Model.Results.River.River import River
@@ -155,8 +157,185 @@ class AdditionalData(SQLSubModel):
         return True
 
 
+class TableData(SQLSubModel):
+    _sub_classes = []
+
+    def __init__(self, id=-1, study=None,
+                 legend="", data=None,
+                 owner_scenario=-1):
+        super(TableData, self).__init__(
+            id=id, status=study.status,
+            owner_scenario=owner_scenario
+        )
+
+        self._study = study
+        self._legend = legend
+        self._data = data
+
+    @property
+    def data(self):
+        return self._data
+
+    @classmethod
+    def _db_create(cls, execute, ext=""):
+        execute(f"""
+          CREATE TABLE results_table_data{ext} (
+            {cls.create_db_add_pamhyr_id()},
+            result INTEGER NOT NULL,
+            legend TEXT NOT NULL,
+            unit TEXT NOT NULL,
+            data_shape_x INTEGER NOT NULL,
+            data_shape_y INTEGER NOT NULL,
+            data_shape_z INTEGER DEFAULT -1,
+            data BLOB NOT NULL,
+            {Scenario.create_db_add_scenario()},
+            {Scenario.create_db_add_scenario_fk()},
+            FOREIGN KEY(result) REFERENCES results(pamhyr_id),
+            PRIMARY KEY(pamhyr_id, result, legend, scenario)
+          )
+        """)
+
+        if ext != "":
+            return True
+
+        return cls._create_submodel(execute)
+
+    @classmethod
+    def _db_update(cls, execute, version, data=None):
+        major, minor, release = version.strip().split(".")
+        create = False
+
+        if major == "0" and int(minor) == 2:
+            if int(release) < 7 and not create:
+                cls._db_create(execute)
+                create = True
+
+        return cls._update_submodel(execute, version, data)
+
+    @classmethod
+    def _db_load(cls, execute, data=None):
+        res = {}
+
+        study = data['study']
+        status = data['status']
+        scenario = data["scenario"]
+        result = data["result"]
+        rid = data["result_pid"]
+
+        table = execute(
+            "SELECT pamhyr_id, " +
+            "legend, unit, " +
+            "data_shape_x, data_shape_y, data_shape_z, " +
+            "data, " +
+            "scenario " +
+            "FROM results_table_data " +
+            f"WHERE scenario = {scenario.id} " +
+            f"AND result = {rid}"
+        )
+
+        for v in table:
+            it = iter(v)
+
+            pid = next(it)
+            legend = next(it)
+            unit = next(it)
+            data_shape_x = next(it)
+            data_shape_y = next(it)
+            data_shape_z = next(it)
+            data = next(it)
+            owner_scenario = next(it)
+
+            dtype = cls._unit_to_dtype(unit)
+
+            np_data = np.frombuffer(data, dtype=dtype)
+            if data_shape_y == -1:
+                np_data = np.reshape(np_data, data_shape_x)
+            elif data_shape_z == -1:
+                np_data = np.reshape(np_data, (data_shape_x,
+                                               data_shape_y))
+            else:
+                np_data = np.reshape(np_data, (data_shape_x,
+                                               data_shape_y,
+                                               data_shape_z))
+
+            new_table = cls(study=study,
+                            legend=legend, data=np_data,
+                            owner_scenario=owner_scenario)
+
+            res[legend] = new_table
+
+        return res
+
+    def _db_save(self, execute, data=None):
+        if self._status.scenario.id != self._owner_scenario:
+            return
+
+        shape_x = -1
+        shape_y = -1
+        shape_z = -1
+        shape = self._data.shape
+
+        if len(shape) == 2:
+            shape_x, shape_y = shape
+        elif len(shape == 1):
+            shape_x, = shape
+        elif len(shape == 3):
+            shape_x, shape_y, shape_z = shape
+        else:
+            logger.error(
+                f"Failed to parse numpy shape: {shape}"
+            )
+
+        execute(
+            "INSERT INTO " +
+            "results_table_data (pamhyr_id, result, " +
+            "legend, unit, " +
+            "data_shape_x, data_shape_y, data_shape_z, " +
+            "data, " +
+            "scenario) VALUES (?, ?, ?, ?, ?, ?, ?, ?, ?)",
+            self._pamhyr_id, data["result"],
+            self._legend, self._dtype_to_unit(self._data.dtype),
+            shape_x, shape_y, shape_z,
+            self._data,
+            self._owner_scenario
+        )
+
+        return True
+
+    @classmethod
+    def _unit_to_dtype(cls, unit):
+        t = {
+            "i32": np.int32, "i64": np.int64,
+            "u32": np.uint32, "u64": np.uint64,
+            "f32": np.float32, "f64": np.float64,
+        }
+
+        return t[unit]
+
+    def _dtype_to_unit(self, dtype):
+        t = {
+            np.dtype(np.int32): "i32", np.dtype(np.int64): "i64",
+            np.dtype(np.uint32): "u32", np.dtype(np.uint64): "u64",
+            np.dtype(np.float32): "f32", np.dtype(np.float64): "f64",
+        }
+
+        return t[dtype]
+
+    def table(self):
+        return self._data
+
+    def __len__(self):
+        return len(self._data)
+
+    def __getitem__(self, key):
+        if isinstance(key, tuple):
+            return self._data[key[0], key[1]]
+
+        self._date[key]
+
+
 class Results(SQLSubModel):
-    _sub_classes = [River, AdditionalData]
+    _sub_classes = [River, TableData, AdditionalData]
 
     def __init__(self, id=-1, study=None, solver=None,
                  repertory="", name="0"):
@@ -167,7 +346,7 @@ class Results(SQLSubModel):
 
         self._name = name
         self._study = study
-        self._river = River(self._study)
+        self._river = River(self._study, self)
 
         self._solver = solver
         self._repertory = repertory
@@ -177,8 +356,11 @@ class Results(SQLSubModel):
             "creation_date": datetime.now(),
             "study_revision": study.status.version,
             "additional_data": [],
+            "table": {},
         }
 
+        self._ts_index = {}
+
         if solver is not None:
             self.set("solver_type", solver._type)
 
@@ -195,6 +377,7 @@ class Results(SQLSubModel):
     def study(self):
         return self._study
 
+    @timer
     def set(self, key, value):
         self._meta_data[key] = value
 
@@ -212,6 +395,16 @@ class Results(SQLSubModel):
     def get(self, key):
         return self._meta_data[key]
 
+    def set_timestamp_index(self, index):
+        self._ts_index = index
+
+    def get_timestamp_id(self, ts):
+        return self._ts_index[ts]
+
+    def compute_timestamp_index(self):
+        for i, ts in enumerate(self._meta_data["timestamps"]):
+            self._ts_index[ts] = i
+
     def reload(self):
         return self._solver.results(
             self._study,
@@ -309,11 +502,20 @@ class Results(SQLSubModel):
             new_results.set("study_revision", revision)
             new_results.set("creation_date", creation_date)
 
+            data["result_pid"] = pid
+            data["result"] = new_results
+
+            table_data = TableData._db_load(execute, data)
+            new_results.set("table", table_data)
+
             sf = ">" + ''.join(itertools.repeat("d", nb_timestamps))
             ts = struct.unpack(sf, timestamps_bytes)
             new_results.set("timestamps", ts)
 
             data["timestamps"] = sorted(ts)
+            new_results.compute_timestamp_index()
+
+            data["parent"] = new_results
             new_results._river = River._db_load(execute, data)
 
             new_results.set(
@@ -321,6 +523,20 @@ class Results(SQLSubModel):
                 AdditionalData._db_load(execute, data)
             )
 
+            # Update global index
+            i = 0
+            for reach in new_results._river.reachs:
+                nb = len(reach.profiles)
+                reach.set_global_index(range(i, i + nb + 1))
+                i += nb
+
+            if "Z" in table_data:
+                for ts in data["timestamps"]:
+                    new_results._river.update_water_limits(
+                        ts,
+                        table_data["Z"][new_results.get_timestamp_id(ts), :]
+                    )
+
             yield (solver_type, new_results)
 
     def _db_save_clear(self, execute, solver_type, data=None):
@@ -343,6 +559,11 @@ class Results(SQLSubModel):
                     f"WHERE scenario = {self._owner_scenario} " +
                     f"AND result = {pid}"
                 )
+                execute(
+                    "DELETE FROM results_table_data " +
+                    f"WHERE scenario = {self._owner_scenario} " +
+                    f"AND result = {pid}"
+                )
                 execute(
                     "DELETE FROM results_add_data " +
                     f"WHERE scenario = {self._owner_scenario} " +
@@ -386,7 +607,19 @@ class Results(SQLSubModel):
         data["result"] = self._pamhyr_id
         self._river._db_save(execute, data)
 
+        tables = self.get("table")
+        for legend in tables:
+            tables[legend]._db_save(execute, data)
+
         for add_data in self.get("additional_data"):
             add_data._db_save(execute, data)
 
         return True
+
+    def new_table_data(self, legend, data):
+        return TableData(
+            study=self._study,
+            legend=legend,
+            data=data,
+            owner_scenario=self._owner_scenario
+        )

src/Model/Results/ResultsAdisTS.py

@@ -1,5 +1,5 @@
 # Results.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Results/River/River.py

@@ -1,5 +1,5 @@
 # River.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -14,12 +14,13 @@
 # You should have received a copy of the GNU General Public License
 # along with this program.  If not, see <https://www.gnu.org/licenses/>.
 
+import types
 import struct
 import logging
 import itertools
 import numpy as np
 
-from tools import flatten
+from tools import flatten, timer
 from functools import reduce
 from datetime import datetime
 
@@ -30,15 +31,17 @@ logger = logging.getLogger()
 
 
 class Profile(SQLSubModel):
-    def __init__(self, profile, study):
+    def __init__(self, profile, study, parent):
         super(Profile, self).__init__(
             id=-1, status=study.status,
             owner_scenario=study.status.scenario.id
         )
 
+        self._parent = parent
         self._study = study
         self._profile = profile  # Source profile in the study
         self._data = {}  # Dict of dict {<ts>: {<key>: <value>, ...}, ...}
+        self._global_index = -1
 
     def __len__(self):
         return len(self._data)
@@ -55,15 +58,26 @@ class Profile(SQLSubModel):
     def geometry(self):
         return self._profile
 
+    @property
+    def global_index(self):
+        return self._global_index
+
+    @global_index.setter
+    def global_index(self, id):
+        self._global_index = id
+
+    @timer
     def set(self, timestamp, key, data):
         if timestamp not in self._data:
             self._data[timestamp] = {}
 
         self._data[timestamp][key] = data
 
+    @timer
     def get_ts(self, timestamp):
         return self._data[timestamp]
 
+    @timer
     def get_key(self, key):
         res = list(
             map(lambda ts: self._data[ts][key],
@@ -71,17 +85,26 @@ class Profile(SQLSubModel):
         )
         return res
 
+    @timer
     def get_ts_key(self, timestamp, key):
         if timestamp in self._data:
             if key in self._data[timestamp]:
-                return self._data[timestamp][key]
+                v = self._data[timestamp][key]
+
+                # If is a generator, compute value(s)
+                if isinstance(v, types.GeneratorType):
+                    v = next(v)
+                    self._data[timestamp][key] = v
+
+                return v
+
         return None
 
     def has_sediment_layers(self):
         return any(map(lambda ts: "sl" in self._data[ts], self._data))
 
     def has_bedload(self):
-        return any(map(lambda ts: "zfd" in self._data[ts], self._data))
+        return any(map(lambda ts: "sl" in self._data[ts], self._data))
 
     @classmethod
     def _db_create(cls, execute, ext=""):
@@ -114,9 +137,9 @@ class Profile(SQLSubModel):
 
     @classmethod
     def _db_load(cls, execute, data=None):
-        new = {}
         status = data['status']
 
+        parent = data['parent']
         study = data['study']
         reach = data['reach']
         profile = data['profile']
@@ -124,6 +147,8 @@ class Profile(SQLSubModel):
         loaded = data['loaded_pid']
         timestamps = data['timestamps']
 
+        new = cls(profile, study, parent)
+
         values = execute(
             "SELECT pamhyr_id, result, key, " +
             "len_data, data, scenario " +
@@ -143,12 +168,6 @@ class Profile(SQLSubModel):
             data = next(it)
             owner_scenario = next(it)
 
-            if profile not in new:
-                new_data = cls(profile, study)
-                new[profile] = new_data
-            else:
-                new_data = new[profile]
-
             if key in ["Z", "Q", "V"]:
                 sf = ">" + ''.join(itertools.repeat("f", len_data))
                 len_values = len(values)
@@ -161,11 +180,11 @@ class Profile(SQLSubModel):
                 )
 
             for timestamp, value in zip(timestamps, values):
-                new_data.set(timestamp, key, value)
+                new.set(timestamp, key, value)
                 if key == "Z":
-                    new_data.update_water_limits(timestamp, value)
+                    new.update_water_limits(timestamp, value)
 
-        return list(new.values())
+        return new
 
     @classmethod
     def _db_load_data_sl_format(cls, values, len_data, timestamps):
@@ -257,19 +276,20 @@ class Profile(SQLSubModel):
 class Reach(SQLSubModel):
     _sub_classes = [Profile]
 
-    def __init__(self, reach, study, with_init=True):
+    def __init__(self, reach, study, parent, with_init=True):
         super(Reach, self).__init__(
             id=-1, status=study.status,
             owner_scenario=study.status.scenario.id
         )
 
+        self._parent = parent
         self._study = study
         self._reach = reach  # Source reach in the study
         self._profiles = []
         if with_init:
             self._profiles = list(
                 map(
-                    lambda p: Profile(p, self._study),
+                    lambda p: Profile(p, self._study, self._parent),
                     reach.profiles
                 )
             )
@@ -279,6 +299,9 @@ class Reach(SQLSubModel):
                 lambda p: p.name[0:8] != 'interpol', self._profiles
             )
         )
+
+        self._global_index = (-1, -1)
+
         self._buffers = {}
 
     def __len__(self):
@@ -307,6 +330,17 @@ class Reach(SQLSubModel):
     def profile(self, id):
         return self._profiles[id]
 
+    def set_global_index(self, indexs):
+        self._global_index = (indexs[0], indexs[-1])
+
+        for profile, ind in zip(self._profiles, indexs):
+            profile.global_index = ind
+
+    @property
+    def global_index(self):
+        return self._global_index
+
+    @timer
     def set(self, profile_id, timestamp, key, data):
         self._profiles[profile_id].set(timestamp, key, data)
 
@@ -322,6 +356,10 @@ class Reach(SQLSubModel):
         for i, p in enumerate(self._profiles):
             self._buffers[key][:, i] = p.get_key(key)
 
+    def update_water_limits(self, timestamp, z_data):
+        for profile, z in zip(self._profiles, z_data):
+            profile.update_water_limits(timestamp, z)
+
     @classmethod
     def _db_create(cls, execute, ext=""):
         return cls._create_submodel(execute)
@@ -335,12 +373,13 @@ class Reach(SQLSubModel):
         reach = data["reach"]
 
         new_reach = cls(
-            data["reach"], data["study"], with_init=False
+            data["reach"], data["study"], data["parent"],
+            with_init=False
         )
 
         for i, profile in enumerate(reach.profiles):
             data["profile"] = profile
-            new_reach._profiles += Profile._db_load(execute, data)
+            new_reach._profiles += [Profile._db_load(execute, data)]
 
         return new_reach
 
@@ -354,13 +393,14 @@ class Reach(SQLSubModel):
 class River(SQLSubModel):
     _sub_classes = [Reach]
 
-    def __init__(self, study):
+    def __init__(self, study, parent):
         super(River, self).__init__(
             id=-1, status=study.status,
             owner_scenario=study.status.scenario.id
         )
 
         self._study = study
+        self._parent = parent
 
         # Dict with timestamps as key
         self._reachs = []
@@ -381,7 +421,7 @@ class River(SQLSubModel):
     def add(self, reach_id):
         reachs = self._study.river.enable_edges()
 
-        new = Reach(reachs[reach_id].reach, self._study)
+        new = Reach(reachs[reach_id].reach, self._study, self._parent)
 
         self._reachs.append(new)
         return new
@@ -394,6 +434,15 @@ class River(SQLSubModel):
             )
         )
 
+    def update_water_limits(self, timestamp, data):
+        for reach in self._reachs:
+            ind = reach.global_index
+
+            reach.update_water_limits(
+                timestamp,
+                data[ind[0]:ind[1]]
+            )
+
     @classmethod
     def _db_create(cls, execute, ext=""):
         return cls._create_submodel(execute)
@@ -405,7 +454,9 @@ class River(SQLSubModel):
     @classmethod
     def _db_load(cls, execute, data=None):
         study = data["study"]
-        new_river = cls(study)
+        parent = data["parent"]
+
+        new_river = cls(study, parent)
 
         for reach in study.river.reachs():
             data["reach"] = reach.reach

src/Model/Results/River/RiverAdisTS.py

@@ -1,5 +1,5 @@
 # River.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/River.py

@@ -1,5 +1,5 @@
 # River.py -- Pamhyr river model
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Serializable.py

@@ -1,5 +1,5 @@
 # Serializable.py -- Pamhyr pickle abstract class
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/SolverParameters/SolverParametersList.py

@@ -1,5 +1,5 @@
 # SolverParametersList.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Status.py

@@ -1,5 +1,5 @@
 # Status.py -- Pamhyr model status class
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Stricklers/Stricklers.py

@@ -1,5 +1,5 @@
 # Stricklers.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Stricklers/StricklersList.py

@@ -1,5 +1,5 @@
 # StricklersList.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Study.py

@@ -1,5 +1,5 @@
 # Study.py -- Pamhyr Study class
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -46,7 +46,7 @@ logger = logging.getLogger()
 
 
 class Study(SQLModel):
-    _version = "0.2.6"
+    _version = "0.2.7"
 
     _sub_classes = [
         Scenario,

src/Model/Tools/PamhyrDB.py

@@ -1,5 +1,5 @@
 # PamhyrDB.py -- Pamhyr abstract model database classes
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Tools/PamhyrDict.py

@@ -1,5 +1,5 @@
 # PamhyrDict.py -- Pamhyr abstract dict for model classes
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Tools/PamhyrList.py

@@ -1,5 +1,5 @@
 # PamhyrList.py -- Pamhyr Abstract List object for the Model
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/Tools/PamhyrListExt.py

@@ -1,5 +1,5 @@
 # PamhyrList.py -- Pamhyr Abstract List object for the Model
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/__init__.py

@@ -1,5 +1,5 @@
 # __init__.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Model/test_Model.py

@@ -1,5 +1,5 @@
 # test_Model.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/SQL.py

@@ -1,5 +1,5 @@
 # SQL.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Scripts/AScript.py

@@ -1,5 +1,5 @@
 # AScript.py -- Pamhyr abstract script class
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Scripts/Hello.py

@@ -1,5 +1,5 @@
 # Hello.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Scripts/ListSolver.py

@@ -1,5 +1,5 @@
 # ListSolver.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Scripts/MageMesh.py

@@ -1,5 +1,5 @@
 # MageMesh.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Scripts/P3DST.py

@@ -1,5 +1,5 @@
 # P3DST.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Scripts/Run.py

@@ -1,5 +1,5 @@
 # Run.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Scripts/mage_to_mascaret.py

@@ -1,3 +1,20 @@
+# mage_to_mascaret.py -- Pamhyr
+# Copyright (C) 2026  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-
 #!/bin/env python3
 
 import sys
@@ -336,6 +353,3 @@ if __name__ == "__main__":
     print( 'Number of arguments:', len(sys.argv), 'arguments.')
     print( 'Argument List:', str(sys.argv))
     mage_to_mascaret(sys.argv[1])
-
-
-

src/Scripts/mascaret_to_mage.py

@@ -1,3 +1,20 @@
+# mascaret_to_mage.py -- Pamhyr
+# Copyright (C) 2026  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-
 #!/bin/env python3
 
 import sys

src/Solver/ASolver.py

@@ -1,5 +1,5 @@
 # ASolver.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Solver/AdisTS.py

@@ -1,5 +1,5 @@
 # AdisTS.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Solver/CommandLine.py

@@ -1,5 +1,5 @@
 # CommandLine.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Solver/GenericSolver.py

@@ -1,5 +1,5 @@
 # GenericSolver.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/Solver/Mage.py

@@ -1,5 +1,5 @@
 # Mage.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by
@@ -1083,7 +1083,7 @@ class Mage8(Mage):
             newline()
 
             reachs = []
-            iprofiles = {}
+            iprofiles = []
             profile_len = []
             reach_offset = {}
 
@@ -1098,15 +1098,18 @@ class Mage8(Mage):
                 i1 = data[2*i] - 1
                 i2 = data[2*i+1] - 1
 
+                # Keep profiles index of all river
+                r.set_global_index(range(i1, i2 + 1))
+
                 # Add profile id correspondance to reach
-                key = (i1, i2)
+                for key in range(i1, i2 + 1):
-                iprofiles[key] = r
+                    iprofiles.append(i)
 
                 # Profile ID offset
                 reach_offset[r] = i1
-                profile_len.append(i2-i1+1)
+                profile_len.append(i2 - i1 + 1)
 
-            logger.debug(f"read_bin: iprofiles = {iprofiles}")
+            logger.debug(f"read_bin: iprofiles = {len(iprofiles)}")
 
             endline()
 
@@ -1124,16 +1127,6 @@ class Mage8(Mage):
             # Data
             newline()
 
-            def ip_to_r(i): return iprofiles[
-                next(
-                    filter(
-                        lambda k: k[0] <= i <= k[1],
-                        iprofiles
-                    )
-                )
-            ]
-            def ip_to_ri(r, i): return i - reach_offset[r]
-
             # check results and geometry consistency
             for i, r in enumerate(reachs):
                 lp = len(r.profiles)
@@ -1144,6 +1137,8 @@ class Mage8(Mage):
                     return
 
             ts = set()
+            tmp_table = {}
+
             end = False
             while not end:
                 n = read_int(1)[0]
@@ -1152,18 +1147,21 @@ class Mage8(Mage):
                     f, dtype=np.byte, count=1)).decode()
                 data = read_float(n)
 
-                # logger.debug(f"read_bin: timestamp = {timestamp} sec")
+                if key not in tmp_table:
+                    tmp_table[key] = []
+
+                tmp_table[key].append(data)
                 ts.add(timestamp)
 
                 if key in ["Z", "Q"]:
                     for i, d in enumerate(data):
                         # Get reach corresponding to profile ID
-                        reach = ip_to_r(i)
+                        reach = reachs[iprofiles[i]]
                         # Get profile id in reach
-                        ri = ip_to_ri(reach, i)
+                        ri = i - reach_offset[reach]
 
                         # Set data for profile RI
-                        reach.set(ri, timestamp, key, d)
+                        # reach.set(ri, timestamp, key, d)
                         if key == "Z":
                             profile = reach.profile(ri)
                             limits = profile.geometry.get_water_limits(d)
@@ -1176,6 +1174,15 @@ class Mage8(Mage):
                 endline()
                 end = newline().size <= 0
 
+            ts_index = {}
+            for i, t in enumerate(sorted(ts)):
+                ts_index[t] = i
+            results.set_timestamp_index(ts_index)
+
+            table = {}
+            for k in tmp_table:
+                table[k] = np.array(tmp_table[k])
+
             results.set("timestamps", ts)
             ts_list = sorted(ts)
             logger.info(f"compute tab...")
@@ -1185,19 +1192,33 @@ class Mage8(Mage):
 
             logger.info(f"compute velocity...")
 
-            for r in reachs:
+            velocity_arr = np.zeros((len(ts), len(iprofiles)))
-                for t in ts_list:
+            for ti, t in enumerate(ts_list):
-                    for i, p in enumerate(r.profiles):
+                j = 0
+                for r in reachs:
+                    for pi, p in enumerate(r.profiles):
                         v = p.geometry.speed(
-                                p.get_ts_key(t, "Q"),
+                            table["Q"][ti, p.global_index],
-                                p.get_ts_key(t, "Z")
+                            table["Z"][ti, p.global_index],
                         )
-                        r.set(i, t, "V", v)
+                        # r.set(pi, t, "V", v)
+                        velocity_arr[ti, j] = v
+                        j += 1
+
+            table["V"] = velocity_arr
+
+            for legend in table:
+                table[legend] = results.new_table_data(
+                    legend, table[legend]
+                )
+
+            results.set("table", table)
+
             logger.info(f"read_bin: ... end with {len(ts)} timestamp read")
 
-        results.bufferize("Z")
+        # results.bufferize("Z")
-        results.bufferize("Q")
+        # results.bufferize("Q")
-        results.bufferize("V")
+        # results.bufferize("V")
         logger.info(f"reading time: '{time.time() - start}'")
 
     @timer
@@ -1267,8 +1288,8 @@ class Mage8(Mage):
                 reachs.append(r)
 
                 # ID of first and last reach profiles
-                i1 = data[2*i] - 1
+                i1 = data[2 * i] - 1
-                i2 = data[2*i+1] - 1
+                i2 = data[2 * i + 1] - 1
 
                 # Add profile id correspondance to reach
                 key = (i1, i2)
@@ -1322,6 +1343,7 @@ class Mage8(Mage):
                     newline()
                     npts = read_int(n)
                     endline()
+
                 sum_npts = sum(npts)
                 logger.debug(f"read_gra: Number of points: {sum_npts}")
 
@@ -1371,35 +1393,42 @@ class Mage8(Mage):
 
             logger.info(f"compute river bed elevation...")
 
+            zfd_lst = []
+
             for r in reachs:
                 z_min = r.geometry.get_z_min()
-                sls = list(map(
+                sls = map(
                     lambda p: p.get_ts_key(ts_list[0], "sl")[0],
                     r.profiles
-                    ))
+                )
                 z_br = list(map(
-                            lambda z, sl: reduce(
+                    lambda z, sl: reduce(
-                                lambda z, h: z - h[0],
+                        lambda z, h: z - h[0],
-                                sl, z
+                        sl, z
-                            ),
+                    ),
-                            z_min,          # Original geometry
+                    z_min,          # Original geometry
-                            sls             # Original sediment layers
+                    sls             # Original sediment layers
-                            ))
+                ))
-                for t in ts_list:
+                for its, t in enumerate(ts_list):
-                    sls = list(map(
+                    sls = map(
                         lambda p: p.get_ts_key(t, "sl")[0],
                         r.profiles
-                        ))
+                    )
                     zfd = list(map(
-                                lambda z, sl: reduce(
+                        lambda z, sl: reduce(
-                                    lambda z, h: z + h[0],
+                            lambda z, h: z + h[0],
-                                    sl, z
+                            sl, z
-                                ),
+                        ),
-                                z_br,       # bedrock
+                        z_br,       # bedrock
-                                sls         # Original sediment layers
+                        sls         # Original sediment layers
-                            ))
+                    ))
-                    for i, p in enumerate(r.profiles):
+
-                        r.set(i, t, "zfd", zfd[i])
+                    zfd_lst.append(np.array(zfd))
+
+            table = results.get("table")
+            table["zfd"] = results.new_table_data(
+                "zfd", np.array(zfd_lst)
+            )
 
             results.set("sediment_timestamps", ts)
             logger.info(f"read_gra: ... end with {len(ts)} timestamp read")

src/Solver/Solvers.py

@@ -1,5 +1,5 @@
 # Solvers.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/View/About/Window.py

@@ -1,5 +1,5 @@
 # Window.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/View/BoundaryCondition/Edit/GenerateDialog.py

@@ -1,5 +1,5 @@
 # GenerateDialog.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/View/BoundaryCondition/Edit/Plot.py

@@ -1,5 +1,5 @@
 # Plot.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/View/BoundaryCondition/Edit/Table.py

@@ -1,5 +1,5 @@
 # Table.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/View/BoundaryCondition/Edit/UndoCommand.py

@@ -1,5 +1,5 @@
 # UndoCommand.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/View/BoundaryCondition/Edit/Window.py

@@ -1,5 +1,5 @@
 # Window.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/View/BoundaryCondition/Edit/translate.py

@@ -1,5 +1,5 @@
 # translate.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/View/BoundaryCondition/Table.py

@@ -1,5 +1,5 @@
 # Table.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/View/BoundaryCondition/UndoCommand.py

@@ -1,5 +1,5 @@
 # UndoCommand.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/View/BoundaryCondition/Window.py

@@ -1,5 +1,5 @@
 # Window.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/View/BoundaryCondition/translate.py

@@ -1,5 +1,5 @@
 # translate.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by

src/View/BoundaryConditionsAdisTS/Edit/Plot.py

@@ -1,5 +1,5 @@
 # Plot.py -- Pamhyr
-# Copyright (C) 2023-2025  INRAE
+# Copyright (C) 2023-2026  INRAE
 #
 # This program is free software: you can redistribute it and/or modify
 # it under the terms of the GNU General Public License as published by