Pep8: Fix.

Translate: Minor change.
Translate: Update.
2026-10-30 03:20:41 +01:00 · 2024-02-07 11:26:29 +01:00 · 2024-02-07 11:23:15 +01:00 · 2024-02-07 11:22:22 +01:00 · 2024-02-07 10:23:02 +01:00 · 2024-02-07 10:09:18 +01:00
136 changed files with 6821 additions and 996 deletions
@@ -19,6 +19,8 @@ tmp
 *.pdf
 *.odt

+!doc/**/*.pdf
+
 doc/dev/images/auto_*
 doc/dev/documentation.*
 !doc/dev/*.org
@@ -20,12 +20,31 @@ stages:
  - test
  - build
  - package
+  - hash
+  - antivirus
  - release

 #############
 # DOWNLOADS #
 #############

+variables:
+  MAGE_VERSION: "v8.3.3"
+
+dl-mage-doc:
+  stage: downloads
+  tags:
+    - linux
+  rules:
+    - if: $CI_COMMIT_BRANCH == 'ci-test' || $CI_COMMIT_BRANCH == 'master' || $CI_COMMIT_TAG
+  script:
+    - mkdir -p doc
+    - cd doc
+    - curl -L -o mage8.pdf https://gitlab.irstea.fr/jean-baptiste.faure/mage/-/releases/$MAGE_VERSION/downloads/documents/Mage-8_Documentation.pdf
+  artifacts:
+    paths:
+      - doc/mage8.pdf
+
 dl-mage-linux:
  stage: downloads
  tags:
@@ -33,7 +52,7 @@ dl-mage-linux:
  rules:
    - if: $CI_COMMIT_BRANCH == 'ci-test' || $CI_COMMIT_BRANCH == 'master' || $CI_COMMIT_TAG
  script:
-    - curl -L -o mage.tgz https://gitlab.irstea.fr/jean-baptiste.faure/mage/-/releases/v8.3.0/downloads/packages/mage_linux.tgz
+    - curl -L -o mage.tgz https://gitlab.irstea.fr/jean-baptiste.faure/mage/-/releases/$MAGE_VERSION/downloads/packages/mage_linux.tgz
    - mkdir -p mage-linux
    - cd mage-linux
    - tar xvf ../mage.tgz
@@ -41,7 +60,8 @@ dl-mage-linux:
    paths:
      - mage-linux/mage
      - mage-linux/mage_extraire
-      - mage-linux/mailleurPF
+      - mage-linux/mailleurTT
+      - mage-linux/libbief.so

 dl-mage-windows:
  stage: downloads
@@ -50,7 +70,7 @@ dl-mage-windows:
  rules:
    - if: $CI_COMMIT_BRANCH == 'ci-test' || $CI_COMMIT_BRANCH == 'master' || $CI_COMMIT_TAG
  script:
-    - curl -L -o mage.tgz https://gitlab.irstea.fr/jean-baptiste.faure/mage/-/releases/v8.3.0/downloads/packages/mage_windows.tgz
+    - curl -L -o mage.tgz https://gitlab.irstea.fr/jean-baptiste.faure/mage/-/releases/$MAGE_VERSION/downloads/packages/mage_windows.tgz
    - mkdir -p mage-windows
    - cd mage-windows
    - tar xvf ../mage.tgz
@@ -58,7 +78,8 @@ dl-mage-windows:
    paths:
      - mage-windows/mage.exe
      - mage-windows/mage_extraire.exe
-      - mage-windows/mailleurPF.exe
+      - mage-windows/mailleurTT.exe
+      - mage-windows/libbief.dll

 #############
 # CONFIGURE #
@@ -129,7 +150,24 @@ test-pep8:
 # BUILD #
 #########

-build-users-doc:
+# build-users-doc:
+#   stage: build
+#   tags:
+#     - linux
+#   needs:
+#     - job: set-version
+#       artifacts: true
+#   script:
+#     - cd ./doc/users/
+#     - ./build.sh
+#   artifacts:
+#     paths:
+#       - doc/users/documentation.pdf
+#       - doc/users/documentation.html
+#       - doc/users/images/
+#   allow_failure: true
+
+build-td:
  stage: build
  tags:
    - linux
@@ -137,13 +175,13 @@ build-users-doc:
    - job: set-version
      artifacts: true
  script:
-    - cd ./doc/users/
+    - cd ./doc/users/Tuto1/
    - ./build.sh
  artifacts:
    paths:
-      - doc/users/documentation.pdf
-      - doc/users/documentation.html
-      - doc/users/images/
+      - doc/users/Tuto1/step-by-step.pdf
+      - doc/users/Tuto1/pas-a-pas.pdf
+      - doc/users/Tuto1/data/
  allow_failure: true

 build-developers-doc:
@@ -186,13 +224,17 @@ build-linux:
  needs:
    - job: dl-mage-linux
      artifacts: true
+    - job: dl-mage-doc
+      artifacts: true
    - job: set-version
      artifacts: true
    - job: build-lang
      artifacts: true
    - job: build-developers-doc
      artifacts: true
-    - job: build-users-doc
+    # - job: build-users-doc
+    #   artifacts: true
+    - job: build-td
      artifacts: true
  script:
    - mkdir -p linux
@@ -237,13 +279,25 @@ build-linux:
    - mkdir -p pamhyr/doc/
    - mkdir -p pamhyr/doc/images/
    - mkdir -p pamhyr/doc/html/
-    - cp ../doc/users/documentation.pdf pamhyr/doc/Pamhyr2-users.pdf
-    - cp ../doc/users/documentation.html pamhyr/doc/Pamhyr2-users.html
+    # - cp ../doc/users/documentation.pdf pamhyr/doc/Pamhyr2-users.pdf
+    # - cp ../doc/users/documentation.html pamhyr/doc/Pamhyr2-users.html
+    - cp ../doc/mage8.pdf pamhyr/doc/mage8.pdf
    - cp ../doc/dev/documentation.pdf pamhyr/doc/Pamhyr2-dev.pdf
    - cp ../doc/dev/documentation.html pamhyr/doc/Pamhyr2-dev.html
    #- cp ../doc/users/images/* pamhyr/doc/images
-    - cp ../doc/dev/images/* pamhyr/doc/images
-    - cp ../doc/images/* pamhyr/doc/images
+    - cp -r ../doc/dev/images/* pamhyr/doc/images
+    - cp -r ../doc/images/* pamhyr/doc/images
+    # Copy Tuto
+    - mkdir -p pamhyr/doc/Tuto1/
+    - mkdir -p pamhyr/doc/Tuto1/data
+    - cp ../doc/users/Tuto1/Hogneau_Engees2022.pdf pamhyr/doc/Tuto1/Hogneau_Engees2022.pdf
+    - cp ../doc/users/Tuto1/step-by-step.pdf pamhyr/doc/Tuto1/Tuto1-en.pdf
+    - cp ../doc/users/Tuto1/pas-a-pas.pdf pamhyr/doc/Tuto1/Tuto1-fr.pdf
+    - cp ../doc/users/Tuto1/*.pamhyr pamhyr/doc/Tuto1/
+    - cp ../doc/users/Tuto1/data/* pamhyr/doc/Tuto1/data/
+    # Copy TP charriage
+    - mkdir -p pamhyr/doc/TP_charriage/
+    - cp ../doc/users/TP_charriage/* pamhyr/doc/TP_charriage
    # Create running script
    - echo "#!/bin/sh" > pamhyr/Pamhyr2
    - echo "./pamhyr/pamhyr $@" >> pamhyr/Pamhyr2
@@ -261,18 +315,23 @@ build-windows:
  needs:
    - job: dl-mage-windows
      artifacts: true
+    - job: dl-mage-doc
+      artifacts: true
    - job: set-version
      artifacts: true
    - job: build-lang
      artifacts: true
    - job: build-developers-doc
      artifacts: true
-    - job: build-users-doc
+    # - job: build-users-doc
+    #   artifacts: true
+    - job: build-td
      artifacts: true
  script:
    - mkdir windows
    - cd windows
    # Setup env
+    - python -m pip install -U pip
    - python -m pip install -r ..\requirements.txt
    - python -m pip install -U -r ..\requirements.txt
    # Run Pyinstaller
@@ -346,6 +405,111 @@ windows-package-exe:
    - copy ..\packages\pamhyr.nsi pamhyr.nsi
    - .\make-windows-exe.bat

+########
+# HASH #
+########
+
+linux-build-hash:
+  stage: hash
+  tags:
+    - release
+    - linux
+  needs:
+    - job: build-linux
+      artifacts: true
+  rules:
+    - if: $CI_COMMIT_BRANCH == 'ci-test' || $CI_COMMIT_BRANCH == 'master' || $CI_COMMIT_TAG
+  script:
+    - cd linux
+    - sha256sum -b pamhyr/pamhyr/pamhyr > pamhyr/pamhyr/pamhyr.sha256
+  artifacts:
+    paths:
+      - linux/pamhyr/pamhyr/pamhyr.sha256
+
+windows-build-hash:
+  stage: hash
+  tags:
+    - release
+    - linux
+  needs:
+    - job: build-windows
+      artifacts: true
+  rules:
+    - if: $CI_COMMIT_BRANCH == 'ci-test' || $CI_COMMIT_BRANCH == 'master' || $CI_COMMIT_TAG
+  script:
+    - cd windows
+    - sha256sum -b pamhyr/pamhyr/pamhyr.exe > pamhyr/pamhyr/pamhyr.exe.sha256
+  artifacts:
+    paths:
+      - windows/pamhyr/pamhyr/pamhyr.exe.sha256
+
+pkg-hash:
+  stage: hash
+  tags:
+    - release
+    - linux
+  needs:
+    - job: linux-package-tar
+      artifacts: true
+    - job: windows-package-zip
+      artifacts: true
+    - job: windows-package-exe
+      artifacts: true
+  rules:
+    - if: $CI_COMMIT_BRANCH == 'ci-test' || $CI_COMMIT_TAG
+  script:
+    - cd windows
+    - sha256sum -b pamhyr-windows.exe > pamhyr-windows.exe.sha256
+    - sha256sum -b pamhyr-windows.zip > pamhyr-windows.zip.sha256
+    - cd ..
+    - cd linux
+    - sha256sum -b pamhyr-gnulinux.tar.xz > pamhyr-gnulinux.tar.xz.sha256
+  artifacts:
+    paths:
+    - windows/pamhyr-windows.exe.sha256
+    - windows/pamhyr-windows.zip.sha256
+    - linux/pamhyr-gnulinux.tar.xz.sha256
+
+#############
+# ANTIVIRUS #
+#############
+
+build-check-clamav:
+  stage: antivirus
+  tags:
+    - release
+    - linux
+  needs:
+    - job: build-linux
+      artifacts: true
+    - job: build-windows
+      artifacts: true
+  rules:
+    - if: $CI_COMMIT_BRANCH == 'ci-test' || $CI_COMMIT_BRANCH == 'master' || $CI_COMMIT_TAG
+  script:
+    - cd packages
+    - ./clamav-scan.sh builds
+  allow_failure: true
+
+pkg-check-clamav:
+  stage: antivirus
+  tags:
+    - release
+    - linux
+  needs:
+    - job: linux-package-tar
+      artifacts: true
+    - job: windows-package-zip
+      artifacts: true
+    - job: windows-package-exe
+      artifacts: true
+  rules:
+    - if: $CI_COMMIT_BRANCH == 'ci-test' || $CI_COMMIT_TAG
+  script:
+    - cd packages
+    - ./clamav-scan.sh packages
+  allow_failure: true
+
 ###########
 # RELEASE #
 ###########
@@ -362,10 +526,12 @@ tag-release:
      artifacts: true
    - job: windows-package-exe
      artifacts: true
-    - job: build-users-doc
-      artifacts: true
+    # - job: build-users-doc
+    #   artifacts: true
    - job: build-developers-doc
      artifacts: true
+    - job: pkg-hash
+      artifacts: true
  rules:
    - if: $CI_COMMIT_TAG
  artifacts:
@@ -373,33 +539,44 @@ tag-release:
      - linux/pamhyr-gnulinux.tar.xz
      - windows/pamhyr-windows.zip
      - windows/pamhyr-windows.exe
+      - linux/pamhyr-gnulinux.tar.xz.sha256
+      - windows/pamhyr-windows.zip.sha256
+      - windows/pamhyr-windows.exe.sha256
      - doc/dev/documentation.pdf
-      - doc/users/documentation.pdf
+      # - doc/users/documentation.pdf
  script:
    - cd packages
  release:
    name: '$CI_COMMIT_TAG'
-    description: 'Automatic release from tag $CI_COMMIT_TAG'
+    description: '$CI_COMMIT_TAG_MESSAGE'
    tag_name: '$CI_COMMIT_TAG'
    ref: '$CI_COMMIT_SHA'
    assets:
      links:
+        - name: 'GNU/Linux CHECKSUM SHA256 (tar.xz)'
+          url: '${CI_PROJECT_URL}/-/jobs/${CI_JOB_ID}/artifacts/raw/linux/pamhyr-gnulinux.tar.xz.sha256'
+          filepath: '/linux/pamhyr-gnulinux.tar.xz.sha256'
+          link_type: 'package'
        - name: 'GNU/Linux (tar.xz)'
          url: '${CI_PROJECT_URL}/-/jobs/${CI_JOB_ID}/artifacts/raw/linux/pamhyr-gnulinux.tar.xz'
          filepath: '/linux/pamhyr-gnulinux.tar.xz'
          link_type: 'package'
+        - name: 'Windows CHECKSUM SHA256 (exe)'
+          url: '${CI_PROJECT_URL}/-/jobs/${CI_JOB_ID}/artifacts/raw/windows/pamhyr-windows.exe.sha256'
+          filepath: '/windows/pamhyr-windows.exe.sha256'
+          link_type: 'package'
        - name: 'Windows (exe)'
          url: '${CI_PROJECT_URL}/-/jobs/${CI_JOB_ID}/artifacts/raw/windows/pamhyr-windows.exe'
          filepath: '/windows/pamhyr-windows.exe'
          link_type: 'package'
+        - name: 'Windows CHECKSUM SHA256 (zip)'
+          url: '${CI_PROJECT_URL}/-/jobs/${CI_JOB_ID}/artifacts/raw/windows/pamhyr-windows.zip.sha256'
+          filepath: '/windows/pamhyr-windows.zip.sha256'
+          link_type: 'package'
        - name: 'Windows (zip)'
          url: '${CI_PROJECT_URL}/-/jobs/${CI_JOB_ID}/artifacts/raw/windows/pamhyr-windows.zip'
          filepath: '/windows/pamhyr-windows.zip'
          link_type: 'package'
-        - name: 'User documentations (pdf)'
-          url: '${CI_PROJECT_URL}/-/jobs/${CI_JOB_ID}/artifacts/raw/doc/users/documentation.pdf'
-          filepath: '/doc/users/documentation.pdf'
-          link_type: 'other'
        - name: 'Dev documentations (pdf)'
          url: '${CI_PROJECT_URL}/-/jobs/${CI_JOB_ID}/artifacts/raw/doc/dev/documentation.pdf'
          filepath: '/doc/dev/documentation.pdf'
@@ -10,35 +10,50 @@ modelling of rivers.
 + Define boundary conditions
 + Define lateral contribution
 + Edit river friction
+ Add reservoirs
+ Add hydraulic structures
 + Generate initial conditions
 + Edit river sedimentary layers
 + Save the study in a unique file
 + Run Mage 8 on a study and visualize results

+Let see the
+[documentation](https://gitlab.irstea.fr/theophile.terraz/pamhyr/-/wikis/home)
+for more details.
+
 ## Install

 ### GNU/Linux

-Downloads [last
+Downloads the [last
 realease](https://gitlab.irstea.fr/theophile.terraz/pamhyr/-/releases/permalink/latest)
 GNU/Linux binary archive.

 ```shell
-tar xf pamhyr-gnulinux-amd64.tar.xz
+tar xf pamhyr-gnulinux.tar.xz
 cd pamhyr
-./pamhyr
+./Pamhyr2
 ```

 ### Windows

-Downloads [last
+Downloads the [last
 realease](https://gitlab.irstea.fr/theophile.terraz/pamhyr/-/releases/permalink/latest)
-Windows installer.
+Windows installer or ZIP archive.

 ### From source code

 ```shell
-# Get source code
+# Get mage
+mkdir mage
+cd mage
+
+curl -L -o mage.tgz https://gitlab.irstea.fr/jean-baptiste.faure/mage/-/releases/v8.3.2/downloads/packages/mage_linux.tgz
+tar xf mage.tgz
+
+cd ..
+
+# Get Pamhyr2 source code
 git clone https://gitlab.irstea.fr/theophile.terraz/pamhyr/
 cd pamhyr

@@ -0,0 +1,4 @@
+#! /bin/sh
+
+pdflatex -no-shell-escape step-by-step.tex
+pdflatex -no-shell-escape pas-a-pas.tex
@@ -0,0 +1,299 @@
+%% LyX 2.0.2 created this file.  For more info, see http://www.lyx.org/.
+%% Do not edit unless you really know what you are doing.
+\documentclass[12pt,french]{article}
+\usepackage[T1]{fontenc}
+\usepackage[latin9]{inputenc}
+\usepackage{geometry}
+\geometry{verbose,tmargin=2cm,bmargin=2cm,lmargin=2cm,rmargin=2cm,headheight=2cm,headsep=2cm,footskip=2cm}
+\usepackage{textcomp}
+\usepackage{graphicx}
+\usepackage{hyperref}
+
+\makeatletter
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%% LyX specific LaTeX commands.
+\newcommand{\noun}[1]{\textsc{#1}}
+%% Because html converters don't know tabularnewline
+\providecommand{\tabularnewline}{\\}
+
+\makeatother
+
+\usepackage{babel}
+\addto\extrasfrench{%
+   \providecommand{\og}{\leavevmode\flqq~}%
+   \providecommand{\fg}{\ifdim\lastskip>\z@\unskip\fi~\frqq}%
+}
+
+\begin{document}
+\includegraphics[width=5cm]{img/Logo-INRAE_Transparent.png}
+
+~
+
+~
+
+~
+
+\begin{center}
+
+Tutoriel pour Pamhyr2
+
+Janvier 2024
+
+\par\end{center}
+
+~
+
+~
+
+\begin{center}
+
+\textbf{\LARGE Modélisation 1D de la rivière  } \\
+\textbf{\LARGE Hogneau (Nord, France) avec Pamhyr2}
+
+\par\end{center}{\LARGE \par}
+
+~
+
+~
+
+\begin{center}
+{\large INRAE Lyon-Grenoble Auvergne-Rhône-Alpes}
+\par\end{center}{\large \par}
+
+\begin{center}
+
+RiverLy, Hydraulique des rivières
+
+\par\end{center}
+
+~
+
+~
+
+~
+
+~
+
+~
+
+~
+
+\begin{center}
+\begin{tabular}{lll}
+Autors : & Pierre-Antoine Rouby & pierre-antoine.rouby@inrae.fr\tabularnewline
+& Théophile TERRAZ & theophile.terraz@inrae.fr\tabularnewline
+& Lionel Pénard & lionel.penard@inrae.fr\tabularnewline
+
+\end{tabular}
+\par\end{center}
+
+~
+
+\pagebreak{}
+
+\begin{center}
+\tableofcontents{}
+\par\end{center}
+
+~
+
+\pagebreak{}
+
+% \section{Introduction}
+%
+% TODO
+%
+% \pagebreak{}
+
+
+\section{Installer Pamhyr2}
+
+Pamhyr2 peut être téléchargé ici : \url{https://gitlab.irstea.fr/theophile.terraz/pamhyr}.
+
+\begin{center}
+\includegraphics[width=15cm]{img/dl.png}
+\par\end{center}
+
+
+Utilisez le bouton de téléchargement GNU Linux ou Windows en fonction de votre système. Sous Windows, lancez le programme d'installation. Sous Linux, décompressez l'archive et lancez Pamhyr2.
+
+
+\section{Créer une première étude}
+
+Dans la fenêtre principale, cliquez sur \texttt{[Fichier] => [Nouvelle étude]} pour créer une nouvelle étude. Choisissez un nom, par exemple Hogneau, et validez
+
+Cliquez sur \texttt{[Réseau] => [Editer le réseau]} pour créer les biefs de votre rivière. Dans cette fenêtre, vous devez définir un graphe orienté qui représente les biefs de votre réseau fluvial : les arêtes sont les biefs et les n½uds sont soit des conditions limites amont, soit des conditions limites aval, soit des jonctions entre biefs.
+Appuyez sur le bouton \includegraphics[width=0.5cm]{img/gtk_add.png} pour entrer dans le mode \textit{Ajout}. Créez deux n½uds en cliquant dans la zone grise de la fenêtre, et créez un lien en cliquant à nouveau sur chaque n½ud. Appuyez à nouveau sur \includegraphics[width=0.5cm]{img/gtk_add.png} pour quitter le mode \textit{Ajout}. Vous avez créé votre premier bief, avec un n½ud amont et un n½ud aval. Dans la partie inférieure de la fenêtre \textit{Editer le réseau hydrographique}, vous pouvez renommer les n½uds et les biefs. Comme le bief que vous avez créé est automatiquement sélectionné, toutes les étapes suivantes s'appliqueront à ce bief. La fenêtre doit se présenter comme suit :
+
+
+\begin{center}
+\includegraphics[width=15cm]{img/network.png}
+\par\end{center}
+
+
+Fermer la fenêtre \textit{Editer le réseau}.
+
+
+\section{Editer la géometrie de la rivière}
+
+Cliquez sur \texttt{[Géometrie] => [Editer la géometrie]} pour définir la géométrie du bief sélectionné. Cliquez sur le bouton \texttt{[Importer]} et sélectionnez le fichier \texttt{Data/Bief\_1.st}. Vous devriez voir :
+
+
+\begin{center}
+\includegraphics[width=15cm]{img/Geo.png}
+\par\end{center}
+
+
+Le panneau de gauche contient une liste de toutes les sections en travers avec leur nom et leur abscisse longitudinale (PK). Dans le graphique en haut à gauche, vous pouvez voir la vue de dessus de la rivière, dans le panneau en haut à droite, la coupe longitudinale de la rivière et dans le graphique en bas, vous pouvez voir la section en travers sélectionnée (bleu) ainsi que la suivante (pointillés violets) et la précédente (pointillés noirs). Vous pouvez vous déplacer dans la liste des sections en cliquant dans le tableau ou à l'aide de l'ascenseur situé entre le tableau et les graphiques.
+
+Vous pouvez éditer la section en travers sélectionnée en cliquant sur l'icône \includegraphics[width=0.5cm]{"img/edit.png"}.
+
+Sélectionnez la section en travers nommée \textit{PontRD101m} et ouvrez la fenêtre d'édition. Vous devriez voir :
+
+\begin{center}
+\includegraphics[width=15cm]{img/editsect.png}
+\par\end{center}
+
+
+Sur le panneau de gauche se trouve la liste de tous les points de la section, avec leurs coordonnées, leur nom et leur abscisse transversale. La coordonnée Z du point le plus haut est inscrite en bleu et celle du point le plus bas en rouge. Les points peuvent avoir un nom. Si un point portant le même nom existe dans toutes les sections d'un bief, il forme une ligne longitudinale (ou ligne directrice). Par exemple, nous avons ici \textit{rg} et \textit{rd} qui représentent la rive gauche et la rive droite du lit mineur.
+
+Sur le graphique figure une projection de la section en travers. Vous pouvez utiliser \texttt{[ctrl + clic]} pour sélectionner un point dans le tracé et \texttt{[maj + clic]} pour sélectionner une ligne d'eau et visualiser des données géométriques utiles. Vous pouvez fermer la fenêtre d'édition de la section en travers et la fenêtre d'édition de la géométrie.
+
+\section{Editer les conditions aux limites}
+
+Dans la fenêtre principale, cliquez sur \texttt{[Hydraulique] => [Conditions aux limites et apports ponctuels]} :
+
+\begin{center}
+\includegraphics[width=15cm]{img/boundary.png}
+\par\end{center}
+
+
+ Utilisez le bouton \textit{ajouter} en haut à gauche de la fenêtre pour ajouter une condition limite pour le liquide.
+ Sur la nouvelle ligne, on peut cliquer pour sélectionner la ligne entière, et double-cliquer pour sélectionner la cellule.
+ Sélectionnez la cellule \textit{Type} pour donner un nom à la condition limite. Ici, nous définirons le débit mesuré lors de la crue de février 2002. Vous pouvez nommer cette condition limite "crue2002".
+ Sélectionner la cellule \textit{Type} et utiliser la combo box pour mettre une loi Q(t).
+ Sélectionnez la cellule \textit{Noeud} et attribuez cette condition au noeud amont.
+ Les noms des noeuds sont rappelés dans le réseau du panneau de droite.
+ Sélectionnez maintenant la ligne entière et cliquez sur le bouton d'édition \includegraphics[width=0.5cm]{"img/edit.png"}. Vous avez ouvert la fenêtre \textit{Éditer les conditions aux limites}.
+ Dans un éditeur de texte, ouvrez le fichier \texttt{Données/Fevrier\_2002.txt}. Copiez le contenu du fichier (par exemple avec \textit{ctrl+a} puis \textit{ctrl+c}) et collez-le dans le panneau gauche de la fenêtre \textit{Éditer les conditions aux limites} avec \textit{ctrl+v}. Vous pouvez maintenant voir la courbe de débit :
+
+\begin{center}
+\includegraphics[width=15cm]{img/fev2002.png}
+\par\end{center}
+
+
+Fermer cette fenêtre. Revenir sur la fenêtre \textit{Conditions aux limites}. Ajouter une nouvelle ligne, lui donner un nom, lui donner le type \textit{Z(T)} et l'associer au noeud aval du réseau. Ouvrez la fenêtre \textit{Éditer les conditions aux limites} (\includegraphics[width=0.5cm]{"img/edit.png"}). Ajoutez deux lignes. Dans la première, entrez le temps : 0.00.00 et Z : 15.000.
+Dans la seconde, saisissez le temps : 1.00.00 et Z : 15.000. Cela crée une côte constante de l'eau en aval. Pour le calcul, Mage extrapolera continuellement l'élévation de l'eau.
+Vous pouvez fermer les fenêtres \textit{Éditer les conditions aux limites} et \textit{Conditions aux limites}.
+
+\section{Créer les conditions initiales}
+
+Dans la fenêtre principale, cliquez sur \texttt{[Hydraulique] => [Conditions initiales]}.
+Si vous ne connaissez pas les conditions initiales de la côte de l'eau et du débit de la rivière, vous pouvez utiliser les boutons \texttt{[Générer une hauteur minimale]} ou \texttt{[Générer un débit constant]} pour laisser Pamhyr2 estimer une condition initiale à l'aide de la formule de Manning-Strickler.
+Cliquez sur \texttt{[Générer à partir du débit]} et saisissez un débit de $4 m^3$ dans la fenêtre contextuelle pour générer une condition initiale de hauteur d'eau basée sur la formule de Manning-Strickler et un débit uniforme de $4 m^3$. Vous devriez voir :
+
+
+\begin{center}
+\includegraphics[width=15cm]{img/ic.png}
+\par\end{center}
+
+
+Fermer la fenêtre \textit{Conditions initiales}
+
+
+\section{Editer les coefficients de frottement}
+
+Dans la fenêtre principale, cliquez sur \texttt{[Hydraulique] => [Editer les frottements]}.
+Vous devez d'abord définir des jeux de coefficients de Strickler. Cliquez sur \includegraphics[width=0.5cm]{"img/edit.png"} pour ouvrir la fenêtre \textit{Strickler}. Vous pouvez y créer des couples de coefficients de Strickler, le premier pour le lit mineur, le second pour le lit moyen. Cliquez quatre fois sur \textit{add} pour créer quatre nouveaux couples. Donnez-leur les valeurs suivantes :
+
+
+\begin{center}
+\includegraphics[width=15cm]{img/K.png}
+\par\end{center}
+
+
+Fermez la fenêtre \textit{Strickler}. Dans la fenêtre \textit{Editer les frottements}, ajoutez quatre lignes avec le bouton \includegraphics[width=0.5cm]{img/gtk_add.png} pour créer quatre zones de frottement. Chaque zone est définie par un PK \textit{début} et de \textit{fin} PK et un couple \textit{begin} et \textit{end} couple de Strickler. Les couples de coefficients de Strickler à l'intérieur d'une zone sont interpolés à partir des couples \textit{begin} et \textit{end}. Dans notre cas, nous utiliserons des coefficients constants par zone. Définissez les zones comme suit :
+
+
+\begin{center}
+\includegraphics[width=15cm]{img/frictions.png}
+\par\end{center}
+
+
+La zone sélectionnée est surlignée en bleu. Fermez la fenêtre \textit{Editer les frottements}.
+
+
+\section{Modélisation des ouvrages hydrauliques}
+
+Parfois, il peut y avoir des sections en travers dans lesquelles les équations de Saint-Venant ne peuvent pas être utilisées pour modéliser l'écoulement de l'eau. Dans ce cas, nous devons définir une autre loi pour relier la côte de l'eau et le débit. C'est le cas, par exemple, au niveau des ponts lorsque la hauteur d'eau est trop élevée, ce qui entraîne un écoulement en charge. Pamhyr2 permet de définir différents ouvrages hydrauliques avec des lois paramétrables. Dans notre cas, on doit représenter un seuil et deux ponts comme ouvrages hydrauliques.
+Dans la fenêtre principale, cliquez sur \texttt{[Hydraulique] => [Ouvrages hydrauliques]} pour ouvrir la fenêtre des ouvrages hydrauliques. Cliquez trois fois sur le bouton \includegraphics[width=0.5cm]{img/gtk_add.png} pour créer trois ouvrages hydrauliques. Chaque structure peut avoir un nom et doit avoir une portée et un PK. Définissez-les comme suit :
+
+
+\begin{center}
+\includegraphics[width=15cm]{img/hs.png}
+\par\end{center}
+
+
+Sélectionnez le seuil aval et cliquez sur \includegraphics[width=0.5cm]{"img/edit.png"} pour modifier les lois de cette ouvrage. Les ouvrages hydrauliques sont composés d'ouvrages hydrauliques élémentaires. Vous pouvez combiner les lois de plusieurs ouvrages hydrauliques élémentaires pour créer votre ouvrage. Pour ce seuil, nous n'avons besoin que d'un ouvrage hydraulique élémentaire de type déversoir. Cliquez sur \includegraphics[width=0.5cm]{img/gtk_add.png} pour ajouter un nouvel ouvrage hydraulique élémentaire, donnez-lui le type \textit{seuil} et configurez-le comme suit :
+
+
+\begin{center}
+\includegraphics[width=15cm]{img/seuil.png}
+\par\end{center}
+
+
+Retournez à la fenêtre \textit{Ouvrages hydrauliques}.
+
+Sélectionnez le pont RS101 et cliquez sur \includegraphics[width=0.5cm]{"img/edit.png"} pour éditer les lois de cet ouvrage. Un pont peut être modélisé comme une combinaison d'un orifice pour l'écoulement sous le pont et d'un déversoir pour l'écoulement au-dessus du pont. Créez deux ouvrages hydrauliques élémentaires et définissez-les comme suit :
+
+\begin{center}
+\includegraphics[width=15cm]{img/seuilRS101.png}
+
+\includegraphics[width=15cm]{img/orificeRS101.png}
+\par\end{center}
+
+
+Revenez à la fenêtre \textit{Ouvrages hydrauliques} et appliquez la même procédure pour le pont de Thivencelle :
+
+\begin{center}
+\includegraphics[width=15cm]{img/orificeThivencelle.png}
+
+\includegraphics[width=15cm]{img/seuilThivencelle.png}
+\par\end{center}
+
+
+Vous pouvez maintenant fermer les fenêtres \textit{Ouvrages hydrauliques}.
+
+\section{Paramètres du solveur}
+
+Dans la fenêtre principale, cliquez sur \texttt{[Exécuter] => [Parameters numériques des solveurs]}.
+Dans la fenêtre \textit{Paramètres du solveur}, sélectionnez l'onglet \textit{Mage v8}. Réglez les paramètres du solveur comme suit :
+
+
+\begin{center}
+\includegraphics[width=15cm]{img/param.png}
+\par\end{center}
+
+
+Fermer la fenêtre \textit{Paramètres du solveur}.
+
+\section{Lancer la simulation}
+
+Dans la fenêtre principale, cliquez sur \texttt{[Exécuter] => [Lancer le solveur]}.
+Sélectionnez \textit{Defaut-Mage - (Mage8)} et cliquez sur le bouton \textit{Exécuter}.
+Deux fenêtres s'ouvrent : la fenêtre \textit{check list} et la fenêtre \textit{Log du solveur}.
+La fenêtre \textit{Check list} donne quelques indications sur la validité de votre modèle, et la fenêtre \textit{Log du solveur} affiche les résultats du solveur.
+À partir de la fenêtre \textit{Log du solveur}, vous pouvez réexécuter le calcul, et vous pouvez cliquer sur le bouton \textit{Résultats} pour ouvrir la fenêtre \textit{Résultats}.
+
+\section{Visualiser les résultats}
+
+il est aussi possible d'ouvrir la fenêtre \textit{Résultats} si vous avez fermé la fenêtre \textit{Log du solveur}, en cliquant sur \texttt{[Résultats] => [Visualiser les derniers résultats]} à partir de la fenêtre principale. Le panneau supérieur vous permet de sélectionner le bief, le panneau inférieur gauche vous permet de sélectionner une section en travers dans ce bief. Les trois diagrammes sur la droite montrent le bief et la section en travers de la même manière que dans la fenêtre \textit{Géométrie}. Vous pouvez utiliser le curseur du bas pour visualiser la côte de l'eau à différents pas de temps.
+Pour visualiser le débit, passez à l'onglet \textit{Hydrogramme}.
+Pour créer des tracés 2D personnalisés, cliquez sur le bouton \includegraphics[width=0.5cm]{img/gtk_add.png} en haut à gauche de la fenêtre. Sélectionnez les valeurs que vous voulez sur les axes $X$ et $Y$ et cliquez sur \textit{OK}.
+Vous pouvez maintenant voir un nouvel onglet avec le tracé 2D personnalisé dans le panneau droit de la fenêtre \textit{Results}.
+
+
+
+\pagebreak{}
+\end{document}
+
@@ -25,7 +25,7 @@
 }

 \begin{document}
-\includegraphics[width=5cm]{Logo-INRAE_Transparent.png}
+\includegraphics[width=5cm]{img/Logo-INRAE_Transparent.png}

 ~

@@ -58,7 +58,7 @@ using Pamhyr2
 \par\end{center}{\large \par}

 \begin{center}
-Riverly, river hydraulics
+RiverLy, river hydraulics
 \par\end{center}

 ~
@@ -75,8 +75,9 @@ Riverly, river hydraulics

 \begin{center}
 \begin{tabular}{lll}
-Autors : & Pierre-Antoine Rouby & pierre-antoine.rouby@inrae.fr\tabularnewline
-& Théophile TERRAZ & theophile.terraz@inrae.fr\tabularnewline
+Authors : & Pierre-Antoine Rouby & pierre-antoine.rouby@inrae.fr\tabularnewline
+& Théophile Terraz & theophile.terraz@inrae.fr\tabularnewline
+& Lionel Pénard & lionel.penard@inrae.fr\tabularnewline
 \end{tabular}
 \par\end{center}

@@ -92,17 +93,17 @@ Autors : & Pierre-Antoine Rouby & pierre-antoine.rouby@inrae.fr\tabularnewline

 \pagebreak{}

-\section{Introduction}
-
-TODO
-
-\pagebreak{}
+% \section{Introduction}
+%
+% TODO
+%
+% \pagebreak{}

 \section{Install Pamhyr2}

 Pamhyr2 can be downloaded from \url{https://gitlab.irstea.fr/theophile.terraz/pamhyr}.
 \begin{center}
-\includegraphics[width=15cm]{dl.png}
+\includegraphics[width=15cm]{img/dl.png}
 \par\end{center}

 Use the GNU Linux or the Windows download button depending on your system. On windows, launch the installer. On Linux, unpack the archive and launch Pamhyr2.
@@ -113,10 +114,10 @@ Use the GNU Linux or the Windows download button depending on your system. On wi
 On the main windows, click on \texttt{[Files] => [New Study]} to create a new study.

 Click on \texttt{[River Network] => [Edit River Network]} to create the reaches of your river. In this window, you must define an oriented graph that represents the reaches of your river network: the edges are the reaches and the nodes are either upstream boundary conditions, downstream boundary conditions or junctions.
-Press the \includegraphics[width=0.5cm]{gtk_add.png} to enter the \textit{add} mode. Create two nodes by clicking in the grey zone of the window, and create a link by clicking again on each node. press \includegraphics[width=0.5cm]{gtk_add.png} again to exit the \textit{add} mode. You created your first reach, with an upstream node and a downstream node. In the lower part of the \textit{Edit River Network} window you can rename the nodes and the reaches. As the reach you created is automaticaly selected, all the next steps will apply to this reach. The window should look like that:
+Press the \includegraphics[width=0.5cm]{img/gtk_add.png} to enter the \textit{add} mode. Create two nodes by clicking in the grey zone of the window, and create a link by clicking again on each node. press \includegraphics[width=0.5cm]{img/gtk_add.png} again to exit the \textit{add} mode. You created your first reach, with an upstream node and a downstream node. In the lower part of the \textit{Edit River Network} window you can rename the nodes and the reaches. As the reach you created is automaticaly selected, all the next steps will apply to this reach. The window should look like that:

 \begin{center}
-\includegraphics[width=15cm]{network.png}
+\includegraphics[width=15cm]{img/network.png}
 \par\end{center}

 Close the \textit{Edit River Network} window.
@@ -127,29 +128,29 @@ Close the \textit{Edit River Network} window.
 Click on \texttt{[Geometry] => [Edit Geometry]} to define the geometry of the selected bief. Click on the \texttt{[Import]} button and select the file \texttt{Data/Bief\_1.st}. You should see:

 \begin{center}
-\includegraphics[width=15cm]{Geo.png}
+\includegraphics[width=15cm]{img/Geo.png}
 \par\end{center}

 On the left panel is a list of all the cross sections with their name and longitudinal abscisa. In the top left plot you can see the top view of the river, on the top right panel the longitudinal cross-section of the river and in the bottom plot you can see the selected cross-section (blue) along with the next one (dashed purple) and previous one (dashed black). You can move in the section list using the slider at the very right of the window.

-You can edit the selected cross section by clicking on the \includegraphics[width=0.5cm]{"../../../src/View/ui/ressources/edit.png"} icon.
+You can edit the selected cross section by clicking on the \includegraphics[width=0.5cm]{"img/edit.png"} icon.

 select the cross section named \textit{PontRD101m} and open the edition window. You should see:

 \begin{center}
-\includegraphics[width=15cm]{editsect.png}
+\includegraphics[width=15cm]{img/editsect.png}
 \par\end{center}

 On the left panel is the list of all the points of the section, with their coordinates, their name and their transversal absisa. The Z coordinate of the highest point is written in blue and the lowest in red. Points can have a name. If a point with the same name exists in every section in a reach, it forms a longitudinal line. For example, here we have \textit{rg} and \textit{rd} which represent the left bank and the right bank of the main chanel.

-On the plot is a projection of the cross section. You can use \texttt{[ctrl + click]} to select a point in the plot and \texttt{[shift + click]} to select a water line and fisualize usefull geometric data. You can close the cross section edition window and the geometry edition window.
+On the plot is a projection of the cross section. You can use \texttt{[ctrl + click]} to select a point in the plot and \texttt{[shift + click]} to select a water line and visualize usefull geometric data. You can close the cross section edition window and the geometry edition window.

 \section{Edit the boundary conditions}

 From the main window, click on \texttt{[Hydraulics] => [Boundary conditions and punctual contributions]}.You should see:

 \begin{center}
-\includegraphics[width=15cm]{boundary.png}
+\includegraphics[width=15cm]{img/boundary.png}
 \par\end{center}

 Use the \textit{add} button on the top left of the window to add a liquid boundary condition.
@@ -158,25 +159,25 @@ From the main window, click on \texttt{[Hydraulics] => [Boundary conditions and
 Select the \textit{Type} cell and use the combo box to put a Q(t) law.
 Select the \textit{Node} cell and atribute this condition to the upstream node.
 Names of the nodes are recalled in network in the right panel.
- Now select the whole line and click on the edit button \includegraphics[width=0.5cm]{"../../../src/View/ui/ressources/edit.png"}. You opened the \textit{Edit Boundary Conditions} window.
+ Now select the whole line and click on the edit button \includegraphics[width=0.5cm]{"img/edit.png"}. You opened the \textit{Edit Boundary Conditions} window.
 On a text editor, open the \texttt{Data/Fevrier\_2002.txt} file. Copy the content of the file (for example with \textit{ctrl+a ctrl+c}) and paste it in the left panel of the \textit{Edit Boundary Conditions} window with \textit{ctrl+v}. You can now see the flow discharge curve:

 \begin{center}
-\includegraphics[width=15cm]{fev2002.png}
+\includegraphics[width=15cm]{img/fev2002.png}
 \par\end{center}

-Close this window. Go back on the \textit{Boundary Conditions} window. Add a new line, give it a name, give it the textit{Z(T)} type and associate it to the downstream node of the network. Open the \textit{Edit Boundary Conditions} window (\includegraphics[width=0.5cm]{"../../../src/View/ui/ressources/edit.png"}). Add two lines. In the first one, enter time: 0.00.00 and Z: 15.000.
+Close this window. Go back on the \textit{Boundary Conditions} window. Add a new line, give it a name, give it the textit{Z(T)} type and associate it to the downstream node of the network. Open the \textit{Edit Boundary Conditions} window (\includegraphics[width=0.5cm]{"img/edit.png"}). Add two lines. In the first one, enter time: 0.00.00 and Z: 15.000.
 On the second one, time: 1.00.00 and Z: 15.000. It creates a constant downstream water elevation. For the computaion, Mage will extrapolate continuously the water elevation, that's why we only need to define one hour.
 You can close the the \textit{Edit Boundary Conditions} and the \textit{Boundary Conditions} window.

 \section{Create initial conditions}

 From the main window, click on \texttt{[Hydraulics] => [Initial conditions]}.
-If you don't know the initial conditions in water elevation and flow discharge of the river, you can use \texttt{[Generate minimal height]} or \texttt{[Generate constant discharge]} buttons to let Pamhyr2 estimate an initial condition using the Manning-Strickler formula.
-Click on \texttt{[Generate minimal height]} and enter a discharge of $4 m^2$ in the pop-up window to generate an initial water height condition based on the Manning-Strickler formula and a uniform discharge of $4 m^2$. You should see:
+If you don't know the initial conditions in water elevation and flow discharge of the river, you can use \texttt{[Generate minimal height]} or \texttt{[Generate from discharge]} buttons to let Pamhyr2 estimate an initial condition using the Manning-Strickler formula.
+Click on \texttt{[Generate from discharge]} and enter a discharge of $4 m^3$ in the pop-up window to generate an initial water height condition based on the Manning-Strickler formula and a uniform discharge of $4 m^3$. You should see:

 \begin{center}
-\includegraphics[width=15cm]{ic.png}
+\includegraphics[width=15cm]{img/ic.png}
 \par\end{center}

 Close the \textit{Initial conditions} window.
@@ -185,16 +186,16 @@ Close the \textit{Initial conditions} window.
 \section{Edit friction coefficients}

 From the main window, click on \texttt{[Hydraulics] => [Edit friction]}.
-You fist have to define sets of Strickler coefficients. Click on \includegraphics[width=0.5cm]{"../../../src/View/ui/ressources/edit.png"} to open the \textit{Strickler} window. Here you can create couples of Strickler coefficients, the first one for the minor bed, the second one for the medium bed. Click on \textit{add} four times to create four new couple. Give them the folowing values:
+You fist have to define sets of Strickler coefficients. Click on \includegraphics[width=0.5cm]{"img/edit.png"} to open the \textit{Strickler} window. Here you can create couples of Strickler coefficients, the first one for the minor bed, the second one for the medium bed. Click on \textit{add} four times to create four new couple. Give them the folowing values:

 \begin{center}
-\includegraphics[width=15cm]{K.png}
+\includegraphics[width=15cm]{img/K.png}
 \par\end{center}

-Close the \textit{Strickler} window. On the \textit{Edit friction} window, add four lines with the button \includegraphics[width=0.5cm]{gtk_add.png} to create four friction zones. Each zone is defined by a \textit{begin} and \textit{end} PK and a \textit{begin} and \textit{end} Strickler couple. The strickler coefficient couples inside a zone are interpolated from the \textit{begin} and \textit{end} couples. In our case, we will use constant coefficients per zone. Set the zones as follow:
+Close the \textit{Strickler} window. On the \textit{Edit friction} window, add four lines with the button \includegraphics[width=0.5cm]{img/gtk_add.png} to create four friction zones. Each zone is defined by a \textit{begin} and \textit{end} KP and a \textit{begin} and \textit{end} Strickler couple. The strickler coefficient couples inside a zone are interpolated from the \textit{begin} and \textit{end} couples. In our case, we will use constant coefficients per zone. Set the zones as follow:

 \begin{center}
-\includegraphics[width=15cm]{frictions.png}
+\includegraphics[width=15cm]{img/frictions.png}
 \par\end{center}

 The selected zone is highlighted in blue. Close the \textit{Edit friction} window.
@@ -203,34 +204,34 @@ The selected zone is highlighted in blue. Close the \textit{Edit friction} windo
 \section{Model hydraulic structures}

 Sometimes there can be cross-sections in which Shallow water equations can not be used to model the water flow. In that case, we have to define an other law to link the water elevation and the flow discharge. This is the case, for example, under bridges when the water elevation is too high, leading to a flow in charge. Pamhyr2 enables to define various hydraulic structures with laws that can be parametrized. In our case, a weir and two bridges have to be represented as hydraulic structures.
-From the main window, click on \texttt{[Hydraulics] => [Hydraulic structures]} to open the hydraulic structures window. Click tree times on the \includegraphics[width=0.5cm]{gtk_add.png} button to create three hydraulic structures. Each structure can have a name and must have a reach and a kp. Set them as follow:
+From the main window, click on \texttt{[Hydraulics] => [Hydraulic structures]} to open the hydraulic structures window. Click tree times on the \includegraphics[width=0.5cm]{img/gtk_add.png} button to create three hydraulic structures. Each structure can have a name and must have a reach and a KP. Set them as follow:

 \begin{center}
-\includegraphics[width=15cm]{hs.png}
+\includegraphics[width=15cm]{img/hs.png}
 \par\end{center}

-Select the downstream weir and click on \includegraphics[width=0.5cm]{"../../../src/View/ui/ressources/edit.png"} to edit the laws of this structure. Hydraulic structures are composed of basic hydraulic structures. You can combine the laws of several basic hydraulic structures to setup your structure. For this weir, we only need a weir basic hydraulic structure. Click on \includegraphics[width=0.5cm]{gtk_add.png} to add a new basic hydraulic structure, give it the \textit{weir} type and set it up as folow:
+Select the downstream weir and click on \includegraphics[width=0.5cm]{"img/edit.png"} to edit the laws of this structure. Hydraulic structures are composed of basic hydraulic structures. You can combine the laws of several basic hydraulic structures to setup your structure. For this weir, we only need a weir basic hydraulic structure. Click on \includegraphics[width=0.5cm]{img/gtk_add.png} to add a new basic hydraulic structure, give it the \textit{weir} type and set it up as folow:

 \begin{center}
-\includegraphics[width=15cm]{seuil.png}
+\includegraphics[width=15cm]{img/seuil.png}
 \par\end{center}

 Go back to the \textit{hydraulic structures} window.

-Select the RS101 bridge and click on \includegraphics[width=0.5cm]{"../../../src/View/ui/ressources/edit.png"} to edit the laws of this structure. A bridge can be modeled as a combination of an orifice for the flow under the bridge and a weir for the flow over the bridge. Create two basic hydraulic structures and set them as folow:
+Select the RS101 bridge and click on \includegraphics[width=0.5cm]{"img/edit.png"} to edit the laws of this structure. A bridge can be modeled as a combination of an orifice for the flow under the bridge and a weir for the flow over the bridge. Create two basic hydraulic structures and set them as folow:

 \begin{center}
-\includegraphics[width=15cm]{seuilRS101.png}
+\includegraphics[width=15cm]{img/seuilRS101.png}

-\includegraphics[width=15cm]{orificeRS101.png}
+\includegraphics[width=15cm]{img/orificeRS101.png}
 \par\end{center}

 Go back to the \textit{hydraulic structures} window and aply the same procedure for the Thivencelle bridge:

 \begin{center}
-\includegraphics[width=15cm]{orificeThivencelle.png}
+\includegraphics[width=15cm]{img/orificeThivencelle.png}

-\includegraphics[width=15cm]{seuilThivencelle.png}
+\includegraphics[width=15cm]{img/seuilThivencelle.png}
 \par\end{center}

 You can now close the \textit{hydraulic structures} windows.
@@ -241,7 +242,7 @@ From the main window, click on \texttt{[Execute] => [Numerical parameters for so
 In the window \textit{solver parameters} select the \textit{Mage v8} tab. Set the solver parameters as follow:

 \begin{center}
-\includegraphics[width=15cm]{param.png}
+\includegraphics[width=15cm]{img/param.png}
 \par\end{center}

 Close the \textit{solver parameters} window.
@@ -256,9 +257,9 @@ From the \textit{Solver log} window you can re-run the computation, and from the

 \section{Visualize the results}

-If you closed the textit{Solver log} window, you can click on \texttt{[Results] => [Visualize last results]} from the main window to open the \textit{Results} window. The top lets panel let you select your reach, the bottom left panel lets you select a cross-section in that reach. the tree plots on the right show the reach and the cross-section the same way than in the \textit{Geometry} window. You can use the bottom slider to visualize the water elevation at different timesteps.
+If you closed the \textit{Solver log} window, you can click on \texttt{[Results] => [Visualize last results]} from the main window to open the \textit{Results} window. The top lets panel let you select your reach, the bottom left panel lets you select a cross-section in that reach. the three plots on the right show the reach and the cross-section the same way than in the \textit{Geometry} window. You can use the bottom slider to visualize the water elevation at different timesteps.
 To visualize the flow discharge, switch to the \textit{Hydrograph} tab.
-To create custom 2D plots, click on the \includegraphics[width=0.5cm]{gtk_add.png} button on the top left of the window. Select the values you want on the $X$ and $Y$ axis and click on \textit{OK}.
+To create custom 2D plots, click on the \includegraphics[width=0.5cm]{img/gtk_add.png} button on the top left of the window. Select the values you want on the $X$ and $Y$ axis and click on \textit{OK}.
 You can now see a new tab with the custom 2D plot in the right panel of the \textit{Results} window.


@@ -0,0 +1,21 @@
+#! /bin/bash
+set +x
+
+OPTS="-r -a -i"
+
+if [ "$1" == "builds" ]; then
+    FILES="../windows/ ../linux/"
+else
+    FILES="../windows/pamhyr-windows.exe ../windows/pamhyr-windows.zip ../linux/pamhyr-gnulinux.tar.xz"
+fi
+
+clamscan $OPTS $FILES | tee clamav.log
+
+RES=$(cat clamav.log | grep "Infected files: 0")
+if [ -z "$RES" ]; then
+    echo "Infected files"
+    exit -1
+else
+    echo "OK"
+    exit 0
+fi
@@ -42,7 +42,8 @@ rem MAGE
 mkdir pamhyr\mage
 copy /y ..\mage-windows\mage.exe pamhyr\mage\
 copy /y ..\mage-windows\mage_extraire.exe pamhyr\mage\
-copy /y ..\mage-windows\mailleurPF.exe pamhyr\mage\
+copy /y ..\mage-windows\mailleurTT.exe pamhyr\mage\
+copy /y ..\mage-windows\libbief.dll pamhyr\mage\

 rem Copy tests_cases
 mkdir pamhyr\tests_cases
@@ -52,10 +53,24 @@ copy /y ..\tests_cases\Saar\Saar.pamhyr pamhyr\tests_cases\Saar\
 rem Documentations
 mkdir pamhyr\doc
 mkdir pamhyr\doc\images
-copy /y ..\doc\users\documentation.pdf pamhyr\doc\Pamhyr2-users.pdf
+rem copy /y ..\doc\users\documentation.pdf pamhyr\doc\Pamhyr2-users.pdf
 copy /y ..\doc\dev\documentation.pdf pamhyr\doc\Pamhyr2-dev.pdf
-copy /y ..\doc\users\documentation.html pamhyr\doc\Pamhyr2-users.html
+copy /y ..\doc\mage8.pdf pamhyr\doc\mage8.pdf
+rem copy /y ..\doc\users\documentation.html pamhyr\doc\Pamhyr2-users.html
 copy /y ..\doc\dev\documentation.html pamhyr\doc\Pamhyr2-dev.html
 copy /y ..\doc\users\images\* pamhyr\doc\images
 copy /y ..\doc\dev\images\* pamhyr\doc\images
 copy /y ..\doc\images\* pamhyr\doc\images
+
+rem Tuto
+mkdir pamhyr\doc\Tuto1\
+mkdir pamhyr\doc\Tuto1\data
+copy /y ..\doc\users\Tuto1\Hogneau_Engees2022.pdf pamhyr\doc\Tuto1\Hogneau_Engees2022.pdf
+copy /y ..\doc\users\Tuto1\step-by-step.pdf pamhyr\doc\Tuto1\Tuto1-en.pdf
+copy /y ..\doc\users\Tuto1\pas-a-pas.pdf pamhyr\doc\Tuto1\Tuto1-fr.pdf
+copy /y ..\doc\users\Tuto1\*.pamhyr pamhyr\doc\Tuto1\
+copy /y ..\doc\users\Tuto1\data\* pamhyr\doc\Tuto1\data\
+
+rem TP charriage
+mkdir pamhyr\doc\TP_charriage
+copy /y ..\doc\users\TP_charriage\ pamhyr\doc\TP_charriage
@@ -24,6 +24,7 @@ from tools import flatten, timer
 from PyQt5.QtCore import QCoreApplication

 from Checker.Checker import AbstractModelChecker, STATUS
+from Checker.Study import StudyGeometryChecker

 _translate = QCoreApplication.translate

@@ -195,3 +196,51 @@ class MageNetworkGraphChecker(AbstractModelChecker):
        self._summary = summary
        self._status = status
        return True
+
+
+class MageGeometryGuideLineChecker(StudyGeometryChecker):
+    def __init__(self):
+        super(MageGeometryGuideLineChecker, self).__init__()
+
+        self._name = _translate("Checker", "Mage geometry guide line checker")
+        self._description = _translate(
+            "Checker",
+            "Check if exists geometry guide line is correctly defined \
+for each reaches of the study"
+        )
+        self._reachs = []
+
+    def run(self, study):
+        ok = super(MageGeometryGuideLineChecker, self).run(study)
+
+        if not ok:
+            return ok
+
+        river = study.river
+        edges = river.enable_edges()
+
+        gls = []
+
+        for edge in edges:
+            comp, incomp = edge.reach.compute_guidelines()
+            if len(incomp) != 0:
+                self._status = STATUS.WARNING
+                self._summary = "incomplete_guideline"
+                return False
+
+            gls.append(comp)
+
+            profiles = edge.reach.profiles
+            for profile in profiles:
+                if not profile.has_standard_named_points():
+                    self._status = STATUS.WARNING
+                    self._summary = "no_standard_guileline_defined"
+                    return False
+
+        for gl in gls[1:]:
+            if len(gls[0].symmetric_difference(gl)) != 0:
+                self._status = STATUS.WARNING
+                self._summary = "no_all_reaches_do_not_have_same_defined"
+                return False
+
+        return ok
@@ -82,15 +82,15 @@ class StudyGeometryChecker(AbstractModelChecker):
            self._summary = "no_river_found"
            return False

-        edges = list(filter(lambda e: e.is_enable(), river.edges()))
+        edges = river.enable_edges()
        if len(edges) == 0:
            self._status = STATUS.ERROR
            self._summary = "no_reach_defined"
            return False

        for edge in edges:
-            if edge.is_enable() and len(edge.reach.profiles) < 3:
-                summary = f"no_geometry_defined"
+            if len(edge.reach.profiles) < 2:
+                summary = "no_geometry_defined"
                status = STATUS.ERROR
                ok = False
                self._reachs.append(edge)
@@ -0,0 +1,27 @@
+# AMeshingTool.py -- Pamhyr
+# Copyright (C) 2023  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-
+
+from Model.Except import NotImplementedMethodeError
+
+
+class AMeshingTool(object):
+    def __init__(self):
+        super(AMeshingTool, self).__init__()
+
+    def meshing(self, reach, **kwargs):
+        raise NotImplementedMethodeError(self, self.meshing)
@@ -0,0 +1,324 @@
+# Mage.py -- Pamhyr
+# Copyright (C) 2023  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-
+
+import os
+import logging
+import tempfile
+
+from ctypes import (
+    cdll,
+    byref, Structure,
+    c_char_p, c_wchar_p,
+    create_string_buffer,
+    POINTER, c_void_p,
+    c_int, c_double, c_bool
+)
+from PyQt5.QtCore import QProcess
+
+from tools import logger_color_red, logger_color_reset
+from Meshing.AMeshingTool import AMeshingTool
+
+logger = logging.getLogger()
+
+
+class MeshingWithMage(AMeshingTool):
+    def __init__(self):
+        super(MeshingWithMage, self).__init__()
+
+        self._init_bief_lib()
+
+    def _init_bief_lib(self):
+        self._bief_lib = cdll.LoadLibrary(self._lib_path())
+
+        self._init_c_init_bief_from_geo_file()
+        self._init_c_get_nb_sections()
+        self._init_c_get_nb_points_section()
+        self._init_c_set_bief_name()
+        self._init_c_st_to_m_compl()
+        self._init_c_interpolate_profils_pas_transversal()
+        self._init_c_purge()
+        self._init_c_output_bief()
+
+    @classmethod
+    def _lib_path(cls):
+        ext = "so" if os.name == "posix" else "dll"
+
+        return os.path.abspath(
+            os.path.join(
+                os.path.dirname(__file__),
+                "..", "..", "..", "mage", f"libbief.{ext}"
+            )
+        )
+
+    def _init_c_init_bief_from_geo_file(self):
+        self._c_init_bief_from_geo_file = getattr(
+            self._bief_lib, 'c_init_bief_from_geo_file'
+        )
+        self._c_init_bief_from_geo_file.argtypes = [
+            c_char_p, POINTER(c_int), POINTER(c_int)
+        ]
+        self._c_init_bief_from_geo_file.restype = None
+
+    def _init_c_get_nb_sections(self):
+        self._c_get_nb_sections = getattr(self._bief_lib, 'c_get_nb_sections')
+        self._c_get_nb_sections.argtypes = [POINTER(c_int)]
+        self._c_get_nb_sections.restype = None
+
+    def _init_c_get_nb_points_section(self):
+        self._c_get_nb_points_section = getattr(
+            self._bief_lib, 'c_get_nb_points_section'
+        )
+        self._c_get_nb_points_section.argtypes = [
+            POINTER(c_int), POINTER(c_int)
+        ]
+        self._c_get_nb_points_section.restype = None
+
+    def _init_c_set_bief_name(self):
+        self._c_set_bief_name = getattr(self._bief_lib, 'c_set_bief_name')
+        self._c_set_bief_name.argtypes = [c_char_p]
+        self._c_set_bief_name.restype = None
+
+    def _init_c_st_to_m_compl(self):
+        self._c_st_to_m_compl = getattr(self._bief_lib, 'c_st_to_m_compl')
+        self._c_st_to_m_compl.argtypes = [POINTER(c_int), c_char_p, c_char_p]
+        self._c_st_to_m_compl.restype = None
+
+    def _init_c_interpolate_profils_pas_transversal(self):
+        self._c_interpolate_profils_pas_transversal = getattr(
+            self._bief_lib, 'c_interpolate_profils_pas_transversal'
+        )
+        self._c_interpolate_profils_pas_transversal.argtypes = [
+            POINTER(c_int), POINTER(c_int),
+            c_char_p, c_char_p,
+            POINTER(c_double), POINTER(c_bool),
+            POINTER(c_int), POINTER(c_bool)
+        ]
+        self._c_interpolate_profils_pas_transversal.restype = None
+
+    def _init_c_purge(self):
+        self._c_purge = getattr(self._bief_lib, 'c_purge')
+        self._c_purge.argtypes = None
+        self._c_purge.restype = None
+
+    def _init_c_output_bief(self):
+        self._c_output_bief = getattr(self._bief_lib, 'c_output_bief')
+        self._c_output_bief.argtypes = [c_char_p]
+        self._c_output_bief.restype = None
+
+    #####################
+    # Binding functions #
+    #####################
+
+    def init_bief_from_geo_file(self, name, with_charriage, with_water):
+        cname = create_string_buffer(name.encode())
+        self._c_init_bief_from_geo_file(
+            cname,
+            byref(c_int(with_charriage)),
+            byref(c_int(with_water))
+        )
+
+    def get_nb_sections(self):
+        nb_sections = c_int(0)
+        self._c_get_nb_sections(byref(nb_sections))
+        return nb_sections.value
+
+    def get_nb_points_section(self, section):
+        nb_points = c_int(0)
+        self._c_get_nb_points_section(
+            byref(c_int(section)), byref(nb_points)
+        )
+        return nb_points.value
+
+    def set_bief_name(self, name):
+        cname = create_string_buffer(name.encode())
+        self._c_set_bief_name(cname)
+
+    def st_to_m_compl(self, npoints, tag1='   ', tag2='   '):
+        cnpoints = c_int(npoints)
+        ctag1 = create_string_buffer(tag1.encode())
+        ctag2 = create_string_buffer(tag2.encode())
+
+        self._c_st_to_m_compl(byref(cnpoints), ctag1, ctag2)
+
+    def interpolate_profils_pas_transversal(self, limite1, limite2,
+                                            directrice1, directrice2,
+                                            pas, lplan=False,
+                                            lm=3, lineaire=False):
+        climite1 = c_int(limite1)
+        climite2 = c_int(limite2)
+        cpas = c_double(pas)
+        clplan = c_bool(lplan)
+        clm = c_int(lm)
+        clineaire = c_bool(lineaire)
+        cdirectrice1 = create_string_buffer(directrice1.encode())
+        cdirectrice2 = create_string_buffer(directrice2.encode())
+
+        self._c_interpolate_profils_pas_transversal(
+            byref(climite1), byref(climite2),
+            cdirectrice1, cdirectrice2,
+            byref(cpas), byref(clplan),
+            byref(clm), byref(clineaire)
+        )
+
+    def output_bief(self, name):
+        cname = create_string_buffer(name.encode())
+        self._c_output_bief(cname)
+
+    ###########
+    # Meshing #
+    ###########
+
+    def meshing(self, reach, step: float = 50):
+        if reach is None or len(reach.profiles) == 0:
+            return reach
+
+        with tempfile.TemporaryDirectory() as tmp:
+            st_file = self.export_reach_to_st(reach, tmp)
+            m_file = st_file.rsplit(".ST", 1)[0] + ".M"
+
+            self.load_st_file(st_file)
+
+            ns, npts_max = self.get_reach_stat()
+
+            gl = reach.compute_guidelines()
+
+            # we make sure that the lines are in the left-to-right order
+            guide_list = [
+                x.name
+                for x in reach.profiles[0].named_points()
+                if x.name in gl[0]
+            ]
+
+            self.complete_cross_section(guide_list)
+            self.interpolate_cross_section(ns, step)
+            self.purge()
+
+            self.export_to_m(m_file)
+
+            self.import_m_file(reach, m_file)
+            return reach
+
+    def export_reach_to_st(self, reach, tmp):
+        tmp_st = os.path.join(tmp, "meshing.ST")
+
+        logger.debug(f"meshing: Export ST to {tmp_st}")
+
+        reach.export_reach(tmp_st)
+        return tmp_st
+
+    def load_st_file(self, st):
+        self.init_bief_from_geo_file(st, 0, 0)
+        self.set_bief_name("tmp")
+
+    def get_reach_stat(self):
+        ns = self.get_nb_sections()
+        npts_max = max(
+            map(
+                lambda i: self.get_nb_points_section(i),
+                range(1, ns)
+            )
+        )
+
+        return ns, npts_max
+
+    def complete_cross_section(self, gl=[]):
+        gl1 = ["un"] + gl
+        gl2 = gl + ["np"]
+
+        for gls in zip(gl1, gl2):
+            self.st_to_m_compl(0, gls[0], gls[1])
+
+    def interpolate_cross_section(self, ns, step: float):
+        self.interpolate_profils_pas_transversal(
+            1, ns,
+            'un', 'np',
+            step
+        )
+
+    def purge(self):
+        self._c_purge()
+
+    def export_to_m(self, m):
+        self.output_bief(m)
+
+    def import_m_file(self, reach, m):
+        reach.purge()
+
+        logger.debug(f"meshing: Import geometry from {m}")
+        reach.import_geometry(m)
+
+
+class MeshingWithMageMailleurTT(AMeshingTool):
+    def __init__(self):
+        super(MeshingWithMageMailleurTT, self).__init__()
+
+    @classmethod
+    def _exe_path(cls):
+        ext = "" if os.name == "posix" else ".exe"
+
+        return os.path.abspath(
+            os.path.join(
+                os.path.dirname(__file__),
+                "..", "..", "..", "mage", f"mailleurTT{ext}"
+            )
+        )
+
+    ###########
+    # Meshing #
+    ###########
+
+    def meshing(self, reach, step: float = 50):
+        if reach is None or len(reach.profiles) == 0:
+            return reach
+
+        with tempfile.TemporaryDirectory() as tmp:
+            logger.debug(f"temp file: {tmp}")
+            st_file = self.export_reach_to_st(reach, tmp)
+            m_file = st_file.rsplit(".ST", 1)[0] + ".M"
+
+            proc = QProcess()
+            proc.setWorkingDirectory(tmp)
+
+            logger.debug(f"! mailleurTT {st_file} {m_file} {str(step)}")
+            proc.start(
+                self._exe_path(), [st_file, m_file, str(step)]
+            )
+            proc.waitForFinished()
+
+            errors = proc.readAllStandardError()
+            if len(errors) != 0:
+                logger.error(
+                    f"{logger_color_red()}{errors}{logger_color_reset()}"
+                )
+            else:
+                self.import_m_file(reach, m_file)
+            return reach
+
+    def export_reach_to_st(self, reach, tmp):
+        tmp_st = os.path.join(tmp, "meshing.ST")
+
+        logger.debug(f"meshing: Export ST to {tmp_st}")
+
+        reach.export_reach(tmp_st)
+        return tmp_st
+
+    def import_m_file(self, reach, m):
+        reach.purge()
+
+        logger.debug(f"meshing: Import geometry from {m}")
+        reach.import_geometry(m)
@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-
@@ -0,0 +1,37 @@
+# test_Model.py -- Pamhyr
+# Copyright (C) 2023  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-
+
+import os
+import unittest
+import warnings
+import tempfile
+
+from Model.Saved import SavedStatus
+from Model.Study import Study
+from Model.River import River
+
+from Meshing.Mage import MeshingWithMage
+
+mage_mesher = os.path.exists(MeshingWithMage._lib_path())
+
+
+class MeshingTestCase(unittest.TestCase):
+    @unittest.skipIf(not mage_mesher, "libbief is not available")
+    def test_create_meshingtool_mage(self):
+        mesher = MeshingWithMage()
+        self.assertNotEqual(mesher, None)
@@ -200,6 +200,9 @@ class BoundaryCondition(SQLSubModel):

    @property
    def name(self):
+        if self._name == "":
+            return f"B{self.id + 1}"
+
        return self._name

    @name.setter
@@ -179,3 +179,38 @@ class ClipboardFormatError(ExeceptionWithMessageBox):

    def message(self):
        return self.msg
+
+
+class ExternFileMissingError(ExeceptionWithMessageBox):
+    def __init__(self, module="mage", filename="libbief", path="??/libbief.so",
+                 src_except=None):
+        super(ExternFileMissingError, self).__init__(
+            title=_translate(
+                "Exception", "External file dependence is missing"
+            )
+        )
+
+        self.msg = _translate(
+            "Exception",
+            "'@file' is missing for module @module:\n'@path'"
+        )
+        self.msg = self.msg.replace("@file", filename)
+        self.msg = self.msg.replace("@module", module)
+        self.msg = self.msg.replace("@path", path)
+
+        if src_except is not None:
+            self.msg = self.msg + "\n\n" + f"Exception: {src_except}"
+
+        self.alert()
+
+    def __str__(self):
+        return self.msg
+
+    def header(self):
+        return _translate("Exception", "External file dependence is missing")
+
+    def short_message(self):
+        return _translate("Exception", "External file dependence is missing")
+
+    def message(self):
+        return self.msg
@@ -26,11 +26,21 @@ logger = logging.getLogger()


 class Friction(SQLSubModel):
-    def __init__(self, name: str = "", status=None):
+    _id_cnt = 0
+
+    def __init__(self, id: int = -1, name: str = "",
+                 status=None):
        super(Friction, self).__init__()

        self._status = status

+        if id == -1:
+            self.id = Friction._id_cnt
+        else:
+            self.id = id
+
+        Friction._id_cnt = max(self.id, Friction._id_cnt+1)
+
        self._name = name
        self._edge = None
        self._begin_kp = 0.0
@@ -42,13 +52,13 @@ class Friction(SQLSubModel):
    def _db_create(cls, execute):
        execute("""
          CREATE TABLE friction(
-            id INTEGER NOT NULL PRIMARY KEY AUTOINCREMENT,
-            ind INTERGER NOT NULL,
+            id INTEGER NOT NULL PRIMARY KEY,
+            ind INTEGER NOT NULL,
            begin_kp REAL NOT NULL,
            end_kp REAL NOT NULL,
            reach INTEGER NOT NULL,
-            begin_strickler INTERGER,
-            end_strickler INTERGER,
+            begin_strickler INTEGER NOT NULL,
+            end_strickler INTEGER NOT NULL,
            FOREIGN KEY(reach) REFERENCES river_reach(id),
            FOREIGN KEY(begin_strickler) REFERENCES stricklers(id),
            FOREIGN KEY(end_strickler) REFERENCES stricklers(id)
@@ -70,21 +80,30 @@ class Friction(SQLSubModel):
        stricklers = data["stricklers"].stricklers

        table = execute(
-            "SELECT ind, begin_kp, end_kp, begin_strickler, end_strickler " +
+            "SELECT id, ind, begin_kp, end_kp, " +
+            "begin_strickler, end_strickler " +
            f"FROM friction WHERE reach = {reach.id}"
        )

        for row in table:
-            ind = row[0]
+            id = row[0]
+            ind = row[1]
            # Get stricklers
-            bs = next(filter(lambda s: s.id == row[3], stricklers))
-            es = next(filter(lambda s: s.id == row[4], stricklers))
+            if int(row[4]) == -1:
+                bs = None
+            else:
+                bs = next(filter(lambda s: s.id == row[4], stricklers))
+
+            if int(row[5]) == -1:
+                es = None
+            else:
+                es = next(filter(lambda s: s.id == row[5], stricklers))

            # Create friction
            sec = cls(status=status)
            sec.edge = reach
-            sec.begin_kp = row[1]
-            sec.end_kp = row[2]
+            sec.begin_kp = row[2]
+            sec.end_kp = row[3]
            sec.begin_strickler = bs
            sec.end_strickler = es

@@ -94,14 +113,24 @@ class Friction(SQLSubModel):

    def _db_save(self, execute, data=None):
        ind = data["ind"]
+
+        b_s_id = -1
+        e_s_id = -1
+
+        if self._begin_strickler is not None:
+            b_s_id = self._begin_strickler.id
+        if self._end_strickler is not None:
+            e_s_id = self._end_strickler.id
+
        execute(
            "INSERT INTO " +
-            "friction(ind, begin_kp, end_kp, " +
+            "friction(id, ind, begin_kp, end_kp, " +
            "reach, begin_strickler, end_strickler) " +
            "VALUES (" +
-            f"{ind}, {self._begin_kp}, {self._end_kp}, " +
+            f"{self.id}, {ind}, " +
+            f"{self._begin_kp}, {self._end_kp}, " +
            f"{self._edge.id}, " +
-            f"{self._begin_strickler.id}, {self._end_strickler.id}" +
+            f"{b_s_id}, {e_s_id}" +
            ")"
        )

@@ -19,6 +19,7 @@
 import logging
 import numpy as np
 from typing import List
+from functools import reduce

 from tools import timer

@@ -212,11 +213,21 @@ class ProfileXYZ(Profile, SQLSubModel):
        return profile

    def point_from_data(self, header, data):
+        def float_format(s: str):
+            return float(
+                s.replace(",", ".")
+            )
+
        point = None
        try:
            if len(header) == 0:
+                x = float_format(data[0])
+                y = float_format(data[1])
+                z = float_format(data[2])
+                name = data[3] if len(data) == 4 else ""
+
                point = PointXYZ(
-                    *data, profile=self, status=self._status
+                    x, y, z, name, profile=self, status=self._status
                )
            else:
                valid_header = {'name', 'x', 'y', 'z'}
@@ -309,7 +320,23 @@ class ProfileXYZ(Profile, SQLSubModel):
            )
        except Exception as e:
            logger.debug(f"{e}")
-            raise IndexError(f"Invalid point name: {name}")
+            raise IndexError(
+                f"Invalid point name: {name} " +
+                f"for profile ({self.id}) kp = {self.kp}"
+            )
+
+    def has_standard_named_points(self):
+        l, r = reduce(
+            lambda acc, n: (
+                (acc[0] | (n == "rg")),
+                (acc[1] | (n == "rd"))
+            ),
+            map(lambda p: p.name.lower().strip(),
+                self.points),
+            (False, False)
+        )
+
+        return l & r

    def add(self):
        """Add a new PointXYZ to profile.
@@ -441,8 +468,12 @@ class ProfileXYZ(Profile, SQLSubModel):
            return list(map(lambda s: s - constant, station))

    def width_approximation(self):
-        rg = self.get_point_by_name("rg")
-        rd = self.get_point_by_name("rd")
+        if self.has_standard_named_points():
+            rg = self.get_point_by_name("rg")
+            rd = self.get_point_by_name("rd")
+        else:
+            rg = self.points[0]
+            rd = self.points[-1]

        return abs(rg.dist(rd))

@@ -25,7 +25,7 @@ from copy import deepcopy
 from operator import itemgetter
 from functools import reduce

-from tools import flatten, timer, trace
+from tools import flatten, timer, trace, logger_exception

 from Model.Tools.PamhyrDB import SQLSubModel

@@ -247,6 +247,11 @@ class Reach(SQLSubModel):
        self._update_profile_numbers()
        self._status.modified()

+    def purge(self):
+        self._profiles = []
+        self._update_profile_numbers()
+        self._status.modified()
+
    def move_up_profile(self, index: int):
        if index < len(self.profiles):
            next = index - 1
@@ -264,13 +269,37 @@ class Reach(SQLSubModel):
            self._status.modified()

    def get_x(self):
-        return [profile.x() for profile in self.profiles]
+        return list(
+            map(
+                lambda profile: profile.x(),
+                filter(
+                    lambda profile: len(profile) > 0,
+                    self.profiles
+                )
+            )
+        )

    def get_y(self):
-        return [profile.y() for profile in self.profiles]
+        return list(
+            map(
+                lambda profile: profile.y(),
+                filter(
+                    lambda profile: len(profile) > 0,
+                    self.profiles
+                )
+            )
+        )

    def get_z(self):
-        return [profile.z() for profile in self.profiles]
+        return list(
+            map(
+                lambda profile: profile.z(),
+                filter(
+                    lambda profile: len(profile) > 0,
+                    self.profiles
+                )
+            )
+        )

    def get_z_min(self):
        """List of z min for each profile
@@ -278,7 +307,15 @@ class Reach(SQLSubModel):
        Returns:
            List of z min for each profile
        """
-        return [profile.z_min() for profile in self.profiles]
+        return list(
+            map(
+                lambda profile: profile.z_min(),
+                filter(
+                    lambda profile: len(profile) > 0,
+                    self.profiles
+                )
+            )
+        )

    def get_z_max(self):
        """List of z max for each profile
@@ -286,7 +323,15 @@ class Reach(SQLSubModel):
        Returns:
            List of z max for each profile
        """
-        return [profile.z_max() for profile in self.profiles]
+        return list(
+            map(
+                lambda profile: profile.z_max(),
+                filter(
+                    lambda profile: len(profile) > 0,
+                    self.profiles
+                )
+            )
+        )

    def get_kp(self):
        """List of profiles kp
@@ -296,11 +341,28 @@ class Reach(SQLSubModel):
        """
        return [profile.kp for profile in self.profiles]

+    def get_kp_complete_profiles(self):
+        return list(
+            map(
+                lambda profile: profile.kp,
+                filter(
+                    lambda profile: len(profile) > 0,
+                    self.profiles
+                )
+            )
+        )
+
    def get_kp_min(self):
-        return min(self.get_kp())
+        if len(self.get_kp()) > 0:
+            return min(self.get_kp())
+        else:
+            return 0.0

    def get_kp_max(self):
-        return max(self.get_kp())
+        if len(self.get_kp()) > 0:
+            return max(self.get_kp())
+        else:
+            return 0.0

    # Sediment Layers

@@ -369,7 +431,7 @@ class Reach(SQLSubModel):
        Returns:
            Tuple of complete and incomplete guidelines name.
        """
-        # Get all point contains into a guideline
+        # Get all point contained into a guideline
        named_points = [profile.named_points() for profile in self.profiles]
        points_name = list(
            map(
@@ -482,8 +544,7 @@ class Reach(SQLSubModel):
        Returns:
            Nothing.
        """
-        list_profile = []
-        list_header = []
+        imported_profiles = []

        try:
            list_profile, list_header = self.read_file_st(str(file_path_name))
@@ -500,9 +561,8 @@ class Reach(SQLSubModel):
                        **d, reach=self, status=self._status
                    )
                    prof.import_points(profile)
-                    self.profiles.append(prof)
-                    self._update_profile_numbers()

+                    imported_profiles.append(prof)
                self._status.modified()
        except FileNotFoundError as e:
            logger.error(e)
@@ -510,6 +570,11 @@ class Reach(SQLSubModel):
        except FileFormatError as e:
            logger.error(e)
            e.alert()
+        finally:
+            self.profiles = imported_profiles + self.profiles
+
+            self._update_profile_numbers()
+            return imported_profiles

    @timer
    def read_file_st(self, filename):
@@ -525,6 +590,8 @@ class Reach(SQLSubModel):
        list_header = []
        stop_code = "999.999"

+        logger.debug(f"Import geometry from {filename}")
+
        with open(filename, encoding="utf-8") as file_st:
            for line in file_st:
                if not (line.startswith("#") or line.startswith("*")):
@@ -563,21 +630,31 @@ class Reach(SQLSubModel):

    # TODO: Move this function to model reach
    def export_reach(self, filename):
-        with open(f"{filename}", "w") as file_st:
-            for index in range(len(self.profiles)):
-                profile = self.profiles[index]
+        with open(f"{filename}", "w") as st:
+            cnt = 0
+            for profile in self.profiles:
+                num = f"{cnt:>6}"
+                c1 = f"{profile.code1:>6}"
+                c2 = f"{profile.code2:>6}"
+                t = f"{len(profile.points):>6}"
+                kp = f"{profile.kp:>12f}"[0:12]
+                pname = profile.name
+                if profile.name == "":
+                    pname = f"p{profile.id:>3}".replace(" ", "0")

-                for v in profile.header:
-                    file_st.write(f"{v:>6}")
-                file_st.write("\n")
+                st.write(f"{num}{c1}{c2}{t} {kp} {pname}\n")

-                for point in self._data.profile[index_pro].points:
-                    for i in [point.x, point.y, point.z, point.name]:
-                        file_st.write(f"{i:>13.4f}")
-                        file_st.write("\n")
+                for point in profile.points:
+                    x = f"{point.x:<12.4f}"[0:12]
+                    y = f"{point.y:<12.4f}"[0:12]
+                    z = f"{point.z:<12.4f}"[0:12]
+                    n = f"{point.name:<3}"

-                file_st.write("    999.9990     999.9990     999.9990")
-                file_st.write("\n")
+                    st.write(f"{x} {y} {z} {n}\n")
+
+                st.write("    999.9990     999.9990     999.9990")
+                st.write("\n")
+                cnt += 1

    def get_incline(self):
        first = self.profile(0)
@@ -671,10 +748,14 @@ class Reach(SQLSubModel):
        logger.debug(f"+{incline_acc}")
        logger.debug(f"-{incline_set}")

-        return (
-            reduce(
-                lambda acc, x: acc + x,
-                incline_set,
-                0.0
-            ) / (len(incline_set))
-        )
+        try:
+            return (
+                reduce(
+                    lambda acc, x: acc + x,
+                    incline_set,
+                    0.0
+                ) / (len(incline_set))
+            )
+        except Exception as e:
+            logger_exception(e)
+            return 0
@@ -158,6 +158,9 @@ class BasicHS(SQLSubModel):

    @property
    def name(self):
+        if self._name == "":
+            return f"{self._type}{self.id + 1}"
+
        return self._name

    @name.setter
@@ -37,145 +37,145 @@ class NotDefined(BasicHS):
        self._data = []


-class SeuilDeversoir(BasicHS):
+class DischargeWeir(BasicHS):
    def __init__(self, id: int = -1, name: str = "",
                 status=None):
-        super(SeuilDeversoir, self).__init__(
+        super(DischargeWeir, self).__init__(
            id=id, name=name,
            status=status
        )

        self._type = "S1"
        self._data = [
-            BHSValue("Largeur", float, 1.0, status=status),
-            BHSValue("Cote", float, 1.0, status=status),
-            BHSValue("Coefficient de debit", float, 0.4, status=status),
+            BHSValue("width", float, 1.0, status=status),
+            BHSValue("elevation", float, 1.0, status=status),
+            BHSValue("discharge_coefficient", float, 0.4, status=status),
        ]


-class SeuilTrapezoidal(BasicHS):
+class TrapezoidalWeir(BasicHS):
    def __init__(self, id: int = -1, name: str = "",
                 status=None):
-        super(SeuilTrapezoidal, self).__init__(
+        super(TrapezoidalWeir, self).__init__(
            id=id, name=name,
            status=status
        )

        self._type = "S2"
        self._data = [
-            BHSValue("Largeur", float, 1.0, status=status),
-            BHSValue("Cote", float, 1.0, status=status),
-            BHSValue("Cote de mise en charge", float, 9999.999, status=status),
-            BHSValue("Coefficient de debit", float, 0.4, status=status),
-            BHSValue("Tangeante du demi angle", float, 0.0, status=status),
+            BHSValue("width", float, 1.0, status=status),
+            BHSValue("elevation", float, 1.0, status=status),
+            BHSValue("loading_elevation", float, 9999.999, status=status),
+            BHSValue("discharge_coefficient", float, 0.4, status=status),
+            BHSValue("half-angle_tangent", float, 0.0, status=status),
        ]


-class SeuilTriangulaire(BasicHS):
+class TriangularWeir(BasicHS):
    def __init__(self, id: int = -1, name: str = "",
                 status=None):
-        super(SeuilTriangulaire, self).__init__(
+        super(TriangularWeir, self).__init__(
            id=id, name=name,
            status=status
        )

        self._type = "S3"
        self._data = [
-            BHSValue("Cote", float, 1.0, status=status),
-            BHSValue("Cote de mise en charge", float, 9999.999, status=status),
-            BHSValue("Coefficient de debit", float, 0.4, status=status),
-            BHSValue("Tangeante du demi angle", float, 0.0, status=status),
+            BHSValue("elevation", float, 1.0, status=status),
+            BHSValue("loading_elevation", float, 9999.999, status=status),
+            BHSValue("discharge_coefficient", float, 0.4, status=status),
+            BHSValue("half-angle_tangent", float, 0.0, status=status),
        ]


-class OrificeRectangulaire(BasicHS):
+class RectangularOrifice(BasicHS):
    def __init__(self, id: int = -1, name: str = "",
                 status=None):
-        super(OrificeRectangulaire, self).__init__(
+        super(RectangularOrifice, self).__init__(
            id=id, name=name,
            status=status
        )

        self._type = "OR"
        self._data = [
-            BHSValue("Largeur", float, 0.0, status=status),
-            BHSValue("Cote", float, 0.0, status=status),
-            BHSValue("Cote de mise en charge", float, 9999.999,
+            BHSValue("width", float, 0.0, status=status),
+            BHSValue("elevation", float, 0.0, status=status),
+            BHSValue("loading_elevation", float, 9999.999,
                     status=status),
-            BHSValue("Coefficient de debit", float, 0.4, status=status),
-            BHSValue("Cote de mise en charge maximale", float, 9999.999,
+            BHSValue("discharge_coefficient", float, 0.4, status=status),
+            BHSValue("maximal_loading_elevation", float, 9999.999,
                     status=status),
        ]


-class OrificeCirculaire(BasicHS):
+class CircularOrifice(BasicHS):
    def __init__(self, id: int = -1, name: str = "",
                 status=None):
-        super(OrificeCirculaire, self).__init__(
+        super(CircularOrifice, self).__init__(
            id=id, name=name,
            status=status
        )

        self._type = "OC"
        self._data = [
-            BHSValue("Diametre", float, 0.0, status=status),
-            BHSValue("Cote", float, 0.0, status=status),
-            BHSValue("hauteur envasement", float, 0.0, status=status),
-            BHSValue("Coefficient de debit", float, 0.4, status=status),
+            BHSValue("diameter", float, 0.0, status=status),
+            BHSValue("elevation", float, 0.0, status=status),
+            BHSValue("siltation_height", float, 0.0, status=status),
+            BHSValue("discharge_coefficient", float, 0.4, status=status),
        ]


-# class OrificeVoute(BasicHS):
-#     def __init__(self, id: int = -1, name: str = "",
-#                  status=None):
-#         super(OrificeVoute, self).__init__(
-#             id=id, name=name,
-#             status=status
-#         )
-
-#         self._type = "OV"
-#         self._data = [
-#             BHSValue("Cote", float, 1.0, status=status),
-#             BHSValue("Largeur", float, 1.0, status=status),
-#             BHSValue("Haut de la voute", float, 0.0, status=status),
-#             BHSValue("Bas de la voute", float, 0.0, status=status),
-#             BHSValue("Coefficient de debit", float, 0.4, status=status),
-#         ]
-
-
-class VanneRectangulaire(BasicHS):
+class VaultedOrifice(BasicHS):
    def __init__(self, id: int = -1, name: str = "",
                 status=None):
-        super(VanneRectangulaire, self).__init__(
+        super(VaultedOrifice, self).__init__(
+            id=id, name=name,
+            status=status
+        )
+
+        self._type = "OV"
+        self._data = [
+            BHSValue("elevation", float, 1.0, status=status),
+            BHSValue("width", float, 1.0, status=status),
+            BHSValue("top_of_the_vault", float, 0.0, status=status),
+            BHSValue("bottom_of_the_vault", float, 0.0, status=status),
+            BHSValue("discharge_coefficient", float, 0.4, status=status),
+        ]
+
+
+class RectangularGate(BasicHS):
+    def __init__(self, id: int = -1, name: str = "",
+                 status=None):
+        super(RectangularGate, self).__init__(
            id=id, name=name,
            status=status
        )

        self._type = "V1"
        self._data = [
-            BHSValue("Largeur", float, 1.0, status=status),
-            BHSValue("Cote", float, 0.0, status=status),
-            BHSValue("Coefficient de debit", float, 0.4, status=status),
-            BHSValue("Ouverture", float, 1.0, status=status),
-            BHSValue("Ouverture maximale", float, 1.0, status=status),
+            BHSValue("width", float, 1.0, status=status),
+            BHSValue("elevation", float, 0.0, status=status),
+            BHSValue("discharge coefficient", float, 0.4, status=status),
+            BHSValue("opening", float, 1.0, status=status),
+            BHSValue("maximal_opening", float, 1.0, status=status),
        ]


-class VanneRectangulaireSimplifiee(BasicHS):
+class SimplifiedRectangularGate(BasicHS):
    def __init__(self, id: int = -1, name: str = "",
                 status=None):
-        super(VanneRectangulaireSimplifiee, self).__init__(
+        super(SimplifiedRectangularGate, self).__init__(
            id=id, name=name,
            status=status
        )

        self._type = "V2"
        self._data = [
-            BHSValue("Largeur", float, 1.0, status=status),
-            BHSValue("Cote", float, 0.0, status=status),
-            BHSValue("Coefficient de debit", float, 0.4, status=status),
-            BHSValue("Ouverture", float, 1.0, status=status),
-            BHSValue("Ouverture maximale", float, 1.0, status=status),
+            BHSValue("width", float, 1.0, status=status),
+            BHSValue("elevation", float, 0.0, status=status),
+            BHSValue("discharge coefficient", float, 0.4, status=status),
+            BHSValue("opening", float, 1.0, status=status),
+            BHSValue("maximal_opening", float, 1.0, status=status),
        ]


@@ -189,9 +189,29 @@ class Borda(BasicHS):

        self._type = "BO"
        self._data = [
-            BHSValue("Pas espace", float, 0.1, status=status),
-            BHSValue("Seuil", float, 0.15, status=status),
-            BHSValue("Coefficient", float, 0.4, status=status),
+            BHSValue("step_space", float, 0.1, status=status),
+            BHSValue("weir", float, 0.15, status=status),
+            BHSValue("coefficient", float, 0.4, status=status),
+        ]
+
+
+class CheckValve(BasicHS):
+    def __init__(self, id: int = -1, name: str = "",
+                 status=None):
+        super(CheckValve, self).__init__(
+            id=id, name=name,
+            status=status
+        )
+
+        self._type = "CV"
+        self._data = [
+            BHSValue("width", float, 0.0, status=status),
+            BHSValue("elevation", float, 0.0, status=status),
+            BHSValue("loading_elevation", float, 9999.999,
+                     status=status),
+            BHSValue("discharge_coefficient", float, 0.4, status=status),
+            BHSValue("maximal_loading_elevation", float, 9999.999,
+                     status=status),
        ]


@@ -205,24 +225,25 @@ class UserDefined(BasicHS):

        self._type = "UD"
        self._data = [
-            BHSValue("Parameter 1", float, 0.0, status=status),
-            BHSValue("Parameter 2", float, 0.0, status=status),
-            BHSValue("Parameter 3", float, 0.0, status=status),
-            BHSValue("Parameter 4", float, 0.0, status=status),
-            BHSValue("Parameter 5", float, 0.0, status=status),
+            BHSValue("parameter_1", float, 0.0, status=status),
+            BHSValue("parameter_2", float, 0.0, status=status),
+            BHSValue("parameter_3", float, 0.0, status=status),
+            BHSValue("parameter_4", float, 0.0, status=status),
+            BHSValue("parameter_5", float, 0.0, status=status),
        ]


 BHS_types = {
    "ND": NotDefined,
-    "S1": SeuilDeversoir,
-    "S2": SeuilTrapezoidal,
-    "S3": SeuilTriangulaire,
-    "OR": OrificeRectangulaire,
-    "OC": OrificeCirculaire,
-    # "OV": OrificeVoute,
-    "V1": VanneRectangulaire,
-    "V2": VanneRectangulaireSimplifiee,
+    "S1": DischargeWeir,
+    "S2": TrapezoidalWeir,
+    "S3": TriangularWeir,
+    "OR": RectangularOrifice,
+    "OC": CircularOrifice,
+    # "OV": VaultedOrifice,
+    "V1": RectangularGate,
+    "V2": SimplifiedRectangularGate,
    "BO": Borda,
+    "CV": CheckValve,
    "UD": UserDefined
 }
@@ -187,6 +187,9 @@ class HydraulicStructure(SQLSubModel):

    @property
    def name(self):
+        if self._name == "":
+            return f"HS{self.id + 1}"
+
        return self._name

    @name.setter
@@ -200,6 +203,9 @@ class HydraulicStructure(SQLSubModel):

    @input_kp.setter
    def input_kp(self, input_kp):
+        if input_kp is not None:
+            input_kp = float(input_kp)
+
        self._input_kp = input_kp
        self._status.modified()

@@ -200,6 +200,9 @@ class LateralContribution(SQLSubModel):

    @property
    def name(self):
+        if self._name == "":
+            return f"L{self.id + 1}"
+
        return self._name

    @name.setter
@@ -48,10 +48,14 @@ class Graph(object):

    def enable_edges(self):
        return list(
-            filter(
-                lambda e: e.is_enable(),
-                self._edges
-            )
+            self._enable_edges()
+        )
+
+    def _enable_edges(self):
+        """Return a generator"""
+        return filter(
+            lambda e: e.is_enable(),
+            self._edges
        )

    def edges_names(self):
@@ -138,8 +142,20 @@ class Graph(object):
                self._nodes
            )
        )
+        self._remove_associated_edge(node_name)
        self._status.modified()

+    def _remove_associated_edge(self, node_name: str):
+        edges = list(
+            filter(
+                lambda e: (e.node1.name == node_name or
+                           e.node2.name == node_name),
+                self._edges,
+            )
+        )
+        for edge in edges:
+            self.remove_edge(edge.name)
+
    def create_node(self, x: float = 0.0, y: float = 0.0):
        node = self._create_node(x, y)
        return node
@@ -186,14 +202,14 @@ class Graph(object):
    def is_upstream_node(self, node):
        return reduce(
            lambda acc, e: (acc and (e.node2 != node or not e.enable)),
-            self._edges,
+            self._enable_edges(),
            True
        )

    def is_downstream_node(self, node):
        return reduce(
            lambda acc, e: (acc and (e.node1 != node or not e.enable)),
-            self._edges,
+            self._enable_edges(),
            True
        )

@@ -203,10 +219,9 @@ class Graph(object):
                acc or (
                    (e.node1 == node or
                     e.node2 == node)
-                    and e._enable
                )
            ),
-            self._edges,
+            self._enable_edges(),
            False
        )

@@ -0,0 +1,17 @@
+# __init__.py -- Pamhyr
+# Copyright (C) 2023  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-
@@ -0,0 +1,182 @@
+# test_Network.py -- Pamhyr
+# Copyright (C) 2023  INRAE
+#
+# This program is free software: you can redistribute it and/or modify
+# it under the terms of the GNU General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program.  If not, see <https://www.gnu.org/licenses/>.
+
+# -*- coding: utf-8 -*-
+
+import os
+import unittest
+import tempfile
+
+from Model.Saved import SavedStatus
+
+from Model.Network.Graph import Graph
+from Model.Network.Edge import Edge
+from Model.Network.Node import Node
+
+
+def new_graph():
+    status = SavedStatus()
+    g = Graph(status=status)
+
+    return g
+
+
+class GraphTestCase(unittest.TestCase):
+    def test_graph_0(self):
+        g = new_graph()
+
+        self.assertEqual(g.nodes_counts(), 0)
+        self.assertEqual(g.edges_counts(), 0)
+
+    def test_graph_1(self):
+        g = new_graph()
+
+        n0 = g.add_node()
+        n1 = g.add_node()
+
+        e0 = g.add_edge(n0, n1)
+
+        self.assertEqual(g.nodes_counts(), 2)
+        self.assertEqual(g.edges_counts(), 1)
+
+    def test_graph_2(self):
+        g = new_graph()
+
+        n0 = g.add_node()
+        n1 = g.add_node()
+
+        e0 = g.add_edge(n0, n1)
+
+        g.remove_edge(e0.name)
+
+        self.assertEqual(g.nodes_counts(), 2)
+        self.assertEqual(g.edges_counts(), 0)
+
+    def test_graph_3(self):
+        g = new_graph()
+
+        n0 = g.add_node()
+        n1 = g.add_node()
+
+        e0 = g.add_edge(n0, n1)
+
+        g.remove_node(n0.name)
+
+        self.assertEqual(g.nodes_counts(), 1)
+        self.assertEqual(g.edges_counts(), 0)
+
+    def test_graph_4(self):
+        g = new_graph()
+
+        n0 = g.add_node()
+        n1 = g.add_node()
+        n2 = g.add_node()
+
+        e0 = g.add_edge(n0, n1)
+        e1 = g.add_edge(n1, n2)
+
+        g.remove_node(n1.name)
+
+        self.assertEqual(g.nodes_counts(), 2)
+        self.assertEqual(g.edges_counts(), 0)
+
+    def test_graph_upstream_0(self):
+        g = new_graph()
+
+        n0 = g.add_node()
+        n1 = g.add_node()
+        n2 = g.add_node()
+
+        e0 = g.add_edge(n0, n1)
+        e1 = g.add_edge(n1, n2)
+
+        self.assertEqual(g.is_upstream_node(n0), True)
+        self.assertEqual(g.is_upstream_node(n1), False)
+        self.assertEqual(g.is_upstream_node(n2), False)
+
+    def test_graph_upstream_1(self):
+        g = new_graph()
+
+        n0 = g.add_node()
+        n1 = g.add_node()
+        n2 = g.add_node()
+
+        e0 = g.add_edge(n0, n1)
+        e1 = g.add_edge(n2, n1)
+
+        self.assertEqual(g.is_upstream_node(n0), True)
+        self.assertEqual(g.is_upstream_node(n1), False)
+        self.assertEqual(g.is_upstream_node(n2), True)
+
+    def test_graph_upstream_disable(self):
+        g = new_graph()
+
+        n0 = g.add_node()
+        n1 = g.add_node()
+        n2 = g.add_node()
+
+        e0 = g.add_edge(n0, n1)
+        e1 = g.add_edge(n1, n2)
+
+        e0.disable()
+
+        # self.assertEqual(g.is_upstream_node(n0), False)
+        self.assertEqual(g.is_upstream_node(n1), True)
+        self.assertEqual(g.is_upstream_node(n2), False)
+
+    def test_graph_downstream_0(self):
+        g = new_graph()
+
+        n0 = g.add_node()
+        n1 = g.add_node()
+        n2 = g.add_node()
+
+        e0 = g.add_edge(n0, n1)
+        e1 = g.add_edge(n1, n2)
+
+        self.assertEqual(g.is_downstream_node(n0), False)
+        self.assertEqual(g.is_downstream_node(n1), False)
+        self.assertEqual(g.is_downstream_node(n2), True)
+
+    def test_graph_downstream_1(self):
+        g = new_graph()
+
+        n0 = g.add_node()
+        n1 = g.add_node()
+        n2 = g.add_node()
+
+        e0 = g.add_edge(n0, n1)
+        e1 = g.add_edge(n2, n1)
+
+        self.assertEqual(g.is_downstream_node(n0), False)
+        self.assertEqual(g.is_downstream_node(n1), True)
+        self.assertEqual(g.is_downstream_node(n2), False)
+
+    def test_graph_downstream_disable(self):
+        g = new_graph()
+
+        n0 = g.add_node()
+        n1 = g.add_node()
+        n2 = g.add_node()
+
+        e0 = g.add_edge(n0, n1)
+        e1 = g.add_edge(n1, n2)
+
+        e1.disable()
+
+        self.assertEqual(g.is_downstream_node(n0), False)
+        self.assertEqual(g.is_downstream_node(n1), True)
+        # self.assertEqual(g.is_downstream_node(n2), False)
@@ -152,6 +152,9 @@ class Reservoir(SQLSubModel):

    @property
    def name(self):
+        if self._name == "":
+            return f"R{self.id + 1}"
+
        return self._name

    @name.setter
@@ -16,7 +16,7 @@

 # -*- coding: utf-8 -*-

-from tools import flatten
+from tools import flatten, logger_exception

 from Model.Tools.PamhyrDB import SQLSubModel

@@ -326,6 +326,8 @@ class River(Graph, SQLSubModel):
        return new

    def _db_save(self, execute, data=None):
+        self._db_save_delete_artefact(execute, data)
+
        objs = (self._nodes + self._edges)
        objs.append(self._boundary_condition)
        objs.append(self._initial_conditions)
@@ -341,6 +343,41 @@ class River(Graph, SQLSubModel):
        self._save_submodel(execute, objs, data)
        return True

+    def _db_save_delete_artefact(self, execute, data=None):
+        self._db_save_delete_artefact_where_not_id(
+            execute, data,
+            "river_node", self._nodes
+        )
+        self._db_save_delete_artefact_where_not_id(
+            execute, data,
+            "river_reach", self._edges
+
+        )
+
+    def _db_save_delete_artefact_where_not_id(self, execute, data,
+                                              table: str, els: list):
+        if len(els) == 0:
+            return
+
+        try:
+            execute(
+                f"DELETE FROM {table} " +
+                "WHERE " +
+                " OR ".join(
+                    map(
+                        lambda n: f"( id <> {n.id} )", els
+                    )
+                )
+            )
+        except Exception as e:
+            logger_exception(e)
+
+    def init_default(self):
+        n1 = self.add_node(880.0, 950.0)
+        n2 = self.add_node(1120.0, 1020.0)
+
+        e = self.add_edge(n1, n2)
+
    @property
    def boundary_condition(self):
        return self._boundary_condition
@@ -37,6 +37,9 @@ class Layer(SQLSubModel):

    @property
    def name(self):
+        if self._name == "":
+            return f"Layer{self.id + 1}"
+
        return self._name

    @name.setter
@@ -204,6 +207,9 @@ class SedimentLayer(SQLSubModel):

    @property
    def name(self):
+        if self._name == "":
+            return f"SL{self.id + 1}"
+
        return self._name

    @name.setter
@@ -120,6 +120,8 @@ class Stricklers(SQLSubModel):

    @property
    def name(self):
+        if self._name == "":
+            return f"K{self.id + 1}"
        return self._name

    @name.setter
@@ -225,7 +225,8 @@ class Study(SQLModel):

        if self._update_submodel(version[0]):
            self.execute(
-                f"UPDATE info SET value='{self._version}' WHERE key='version'")
+                f"UPDATE info SET value='{self._version}' WHERE key='version'"
+            )
            return True

        logger.info("TODO: update failed")
@@ -135,6 +135,10 @@ def init_c_output_bief(bief_lib):
    c_output_bief.argtypes = [c_char_p]
    c_output_bief.restype = None

+#####################
+# Binding functions #
+#####################
+

 def init_bief_from_geo_file(name, with_charriage, with_water):
    logger.info("! call init_bief_from_geo_file:")
@@ -145,10 +149,6 @@ def init_bief_from_geo_file(name, with_charriage, with_water):
        byref(c_int(with_water))
    )

-#####################
-# Binding functions #
-#####################
-

 def get_nb_sections():
    nb_sections = c_int(0)
@@ -266,7 +266,7 @@ class MageMesh(AScript):
        )

        # Transform
-        st_to_m_compl(npts_max, 'rg', 'rd')
+        st_to_m_compl(0, ' ', ' ')
        interpolate_profils_pas_transversal(
            1, ns,
            'un', 'np',
@@ -275,6 +275,9 @@ class MageMesh(AScript):
        update_pk("un")

        # Save
+        if os.path.isfile(f"{file_name}.M"):
+            os.remove(f"{file_name}.M")
+
        logger.info(f"Saved meshing geometry to {file_name}.M")
        output_bief(f"{file_name}.M")

@@ -148,7 +148,7 @@ class CommandLineSolver(AbstractSolver):
        """
        cmd = cmd.replace("@install_dir", self._install_dir())
        cmd = cmd.replace("@path", "\"" + path + "\"")
-        cmd = cmd.replace("@input", self.input_param())
+        cmd = cmd.replace("@input", self.input_param().replace(" ", "_"))
        cmd = cmd.replace("@output", self.output_param())
        cmd = cmd.replace("@dir", self._process.workingDirectory())
        cmd = cmd.replace("@args", " ".join(self.cmd_args(study)))
@@ -23,7 +23,9 @@ import numpy as np
 from tools import timer, trace

 from Solver.CommandLine import CommandLineSolver
-from Checker.Mage import MageNetworkGraphChecker
+from Checker.Mage import (
+    MageNetworkGraphChecker, MageGeometryGuideLineChecker,
+)

 from Model.Results.Results import Results
 from Model.Results.River.River import River, Reach, Profile
@@ -36,7 +38,14 @@ def mage_file_open(filepath, mode):

    if "w" in mode:
        # Write header
-        f.write("* This file is generated by PAMHYR, please don't modify\n")
+        comment = "*"
+        if ".ST" in filepath:
+            comment = "#"
+
+        f.write(
+            f"{comment} " +
+            "This file is generated by PAMHYR, please don't modify\n"
+        )

    return f

@@ -81,7 +90,7 @@ class Mage(CommandLineSolver):
            ("mage_compute_reach_volume_balance", "y"),
            ("mage_max_reach_volume_balance", "0.001"),
            ("mage_min_reach_volume_to_check", "1000.0"),
-            ("mage_init_internal", " "),
+            ("mage_init_internal", "n"),
        ]

        return lst
@@ -90,7 +99,9 @@ class Mage(CommandLineSolver):
    def checkers(cls):
        lst = [
            MageNetworkGraphChecker(connectivity=True),
-            MageNetworkGraphChecker(connectivity=False)
+            MageNetworkGraphChecker(connectivity=False),
+            MageGeometryGuideLineChecker(),
+
        ]

        return lst
@@ -240,6 +251,9 @@ class Mage(CommandLineSolver):
            files.append(f"{name}.{t}")

            for bound in bounds:
+                if bound.node is None:
+                    continue
+
                name = f"{bound.node.id:3}".replace(" ", "x")
                f.write(f"* {bound.node.name} ({name}) {bound.bctype}\n")
                f.write(f"${name}\n")
@@ -347,6 +361,9 @@ class Mage(CommandLineSolver):
                frictions = edge.frictions

                for friction in frictions.frictions:
+                    if friction.begin_strickler is None:
+                        continue
+
                    num = f"{id:>3}"
                    bkp = f"{friction.begin_kp:>10.3f}"
                    ekp = f"{friction.end_kp:>10.3f}"
@@ -422,6 +439,9 @@ class Mage(CommandLineSolver):
            files.append(f"{name}.CAS")

            for reservoir in reservoirs:
+                if reservoir.node is None:
+                    continue
+
                reservoir.sort()
                node = reservoir.node
                name = f"{node.id:3}".replace(" ", "x")
@@ -445,6 +465,7 @@ class Mage(CommandLineSolver):
            "ND": "*",
            "S1": "D", "S2": "T", "S3": "T",
            "OR": "O", "OC": "B", "OV": "F",
+            "CV": "O",          # CheckValve
            "V1": "V", "V2": "W",
            "BO": "A",
            "UD": "X",
@@ -462,12 +483,15 @@ class Mage(CommandLineSolver):
            files.append(f"{name}.SIN")

            for hs in hydraulic_structures:
+                if hs.input_reach is None:
+                    continue
+
                if not hs.input_reach.is_enable():
                    continue

                f.write(
                    '* ouvrage au pk ' +
-                    f"{hs.input_kp:>12.1f}" + ' ' +
+                    f"{float(hs.input_kp):>12.1f}" + ' ' +
                    hs.name + '\n'
                )

@@ -480,10 +504,16 @@ class Mage(CommandLineSolver):
                        ]
                    )

+                    name = bhs.name
+                    if name == "":
+                        name = f"HS_{bhs.id:>3}".replace(" ", "0")
+                    else:
+                        name = name.replace(" ", "_")
+
                    f.write(
                        f"{sin_dict[bhs._type]} " +
-                        f"{reach_id} {hs.input_kp:>12.3f} {param_str} " +
-                        f"{bhs.name}\n"
+                        f"{reach_id} {float(hs.input_kp):>12.3f} " +
+                        f"{param_str} {name}\n"
                    )

        return files
@@ -501,7 +531,7 @@ class Mage(CommandLineSolver):
        return res

    def _export_SIN_parameters_5(self, bhs):
-        # S2, OR, V1, V2, UD
+        # S2, OR, V1, V2, UD, CV
        return [
            bhs._data[0].value,
            bhs._data[1].value,
@@ -546,6 +576,42 @@ class Mage(CommandLineSolver):

        return res

+    @timer
+    def _export_VAR(self, study, repertory, qlog, name="0"):
+        files = []
+
+        hydraulic_structures = study.river.hydraulic_structures.lst
+        if len(hydraulic_structures) == 0:
+            return files
+
+        if qlog is not None:
+            qlog.put("Export VAR file")
+
+        with mage_file_open(os.path.join(repertory, f"{name}.VAR"), "w+") as f:
+            files.append(f"{name}.VAR")
+
+            for hs in hydraulic_structures:
+                if hs.input_reach is None:
+                    continue
+
+                if not hs.input_reach.is_enable():
+                    continue
+
+                for bhs in hs.basic_structures:
+                    logger.info(bhs._type)
+                    if bhs._type != "CV":
+                        continue
+
+                    name = bhs.name
+                    if name == "":
+                        name = f"HS_{bhs.id:>3}".replace(" ", "0")
+
+                    f.write(
+                        f"${name} clapet"
+                    )
+
+        return files
+
    @timer
    def _export_DEV(self, study, repertory, qlog, name="0"):
        files = []
@@ -726,6 +792,10 @@ class Mage8(Mage):
                    value = ("p" if value.lower() in ["y", "yes", "true"]
                             else "")

+                logger.debug(
+                    f"export: PAR: {name}: {value} ({p.value})"
+                )
+
                f.write(f"{name} {value}\n")

        return files
@@ -819,6 +889,7 @@ class Mage8(Mage):
        files = files + self._export_RUG(study, repertory, qlog, name=name)
        files = files + self._export_INI(study, repertory, qlog, name=name)
        files = files + self._export_SIN(study, repertory, qlog, name=name)
+        files = files + self._export_VAR(study, repertory, qlog, name=name)
        files = files + self._export_CAS(study, repertory, qlog, name=name)
        files = files + self._export_DEV(study, repertory, qlog, name=name)
        self._export_REP(study, repertory, files, qlog, name=name)
@@ -951,10 +1022,8 @@ class Mage8(Mage):
                        # Set data for profile RI
                        reach.set(ri, timestamp, key, d)
                        if key == "Z":
-                            profile = study.river\
-                                           .current_reach()\
-                                           .reach.profile(ri)
-                            ptX, ptY = profile.get_water_limits(d)
+                            profile = reach.profile(ri)
+                            ptX, ptY = profile.geometry.get_water_limits(d)
                            reach.set(ri, timestamp, "ptX", ptX)
                            reach.set(ri, timestamp, "ptY", ptY)

@@ -1135,9 +1204,10 @@ class Mage8(Mage):
            logger.info(f"read_gra: ... end with {len(ts)} timestamp read")

    @timer
-    def results(self, study, repertory, qlog=None):
+    def results(self, study, repertory, qlog=None, name=None):
        self._study = study
-        name = study.name.replace(" ", "_")
+        if name is None:
+            name = study.name.replace(" ", "_")

        results = super(Mage8, self).results(study, repertory, qlog, name=name)
        self.read_gra(study, repertory, results, qlog, name=name)
@@ -24,13 +24,13 @@ from Solver.Mage import Mage7, Mage8
 _translate = QCoreApplication.translate

 solver_long_name = {
-    "generic": "Generic",
+    # "generic": "Generic",
    # "mage7": "Mage v7",
    "mage8": "Mage v8",
 }

 solver_type_list = {
-    "generic": GenericSolver,
+    # "generic": GenericSolver,
    # "mage7": Mage7,
    "mage8": Mage8,
 }
@@ -167,6 +167,7 @@ class CheckListWindow(PamhyrWindow):
            self.find(QPushButton, "pushButton_ok").setEnabled(True)
            if self._autorun:
                self._parent.solver_log(self._solver)
+                self.end()

        self.update_statusbar()

@@ -119,9 +119,9 @@ class ConfigureWindow(PamhyrDialog):
        )

    def setup_data(self):
-        # Meshing_Tool
-        self.set_line_edit_text("lineEdit_meshing_tool",
-                                self._config.meshing_tool)
+        # # Meshing_Tool
+        # self.set_line_edit_text("lineEdit_meshing_tool",
+        #                         self._config.meshing_tool)

        # Const
        self.set_line_edit_text("lineEdit_segment", str(self._config.segment))
@@ -168,12 +168,12 @@ class ConfigureWindow(PamhyrDialog):
                    "lineEdit_backup_path", f[0]
                )
            ),
-            "pushButton_meshing_tool": lambda: self.file_dialog(
-                select_file=True,
-                callback=lambda f: self.set_line_edit_text(
-                    "lineEdit_meshing_tool", f[0]
-                )
-            ),
+            # "pushButton_meshing_tool": lambda: self.file_dialog(
+            #     select_file=True,
+            #     callback=lambda f: self.set_line_edit_text(
+            #         "lineEdit_meshing_tool", f[0]
+            #     )
+            # ),
        }

        for button in buttons:
@@ -183,9 +183,9 @@ class ConfigureWindow(PamhyrDialog):
        # Solvers
        self._config.solvers = self.solver_table_model._data.copy()

-        # Meshing_Tool
-        self._config.meshing_tool = self.get_line_edit_text(
-            "lineEdit_meshing_tool")
+        # # Meshing_Tool
+        # self._config.meshing_tool = self.get_line_edit_text(
+        #     "lineEdit_meshing_tool")

        # Const
        self._config.segment = self.get_line_edit_text("lineEdit_segment")
@@ -63,13 +63,19 @@ class PlotAC(PamhyrPlot):
        if self.data.number_profiles == 0:
            return

+        np = len(self.data.profiles)
+        if np < 2:
+            return
+
        selected_profile = 0
+
        station = self.data.profile(selected_profile).get_station()
-        station_plus_1 = self.data.profile(selected_profile + 1).get_station()
        elevation = self.data.profile(selected_profile).z()
-        elevation_i_plus_1 = self.data.profile(selected_profile + 1).z()
        gl = self.data.profile(selected_profile).names()

+        station_plus_1 = self.data.profile(selected_profile + 1).get_station()
+        elevation_i_plus_1 = self.data.profile(selected_profile + 1).z()
+
        self.canvas.axes.set_xlabel(
            _translate("MainWindow_reach", "Transverse abscissa (m)"),
            color='black', fontsize=10
@@ -108,7 +114,7 @@ class PlotAC(PamhyrPlot):
        lcomplete = list(self.complete_gl)
        lincomplete = list(self.incomplete_gl)

-        line_2d = [line_2D for line_2D in self.plot_xy.line_gl]
+        line_2d = self.plot_xy.line_gl
        self.color_complete_gl = self.get_line_gl_colors(line_2d)
        self.color_incomplete_gl = 2 * ["#000000"]

@@ -185,11 +191,11 @@ class PlotAC(PamhyrPlot):
        self.canvas.figure.tight_layout()

        label_before_plot_selected = _translate(
-            "MainWindow_reach", "Profil précédent")
+            "MainWindow_reach", "Previous cross-section")
        label_plot_selected = _translate(
-            "MainWindow_reach", "Profil sélectionné")
+            "MainWindow_reach", "Cross-section")
        label_after_plot_selected = _translate(
-            "MainWindow_reach", "Profil suivant")
+            "MainWindow_reach", "Next cross-section")
        color_before_plot_selected = "k"  # 'grey'
        color_plot_selected = 'b'
        color_after_plot_selected = 'm'
@@ -213,7 +219,7 @@ class PlotAC(PamhyrPlot):
        lcomplete = list(self.complete_gl)
        lincomplete = list(self.incomplete_gl)

-        line_2d = [line_2D for line_2D in self.plot_xy.line_gl]
+        line_2d = self.plot_xy.line_gl
        self.color_complete_gl = self.get_line_gl_colors(line_2d)
        self.color_incomplete_gl = 2 * ["#000000"]

@@ -242,12 +248,15 @@ class PlotAC(PamhyrPlot):
                x_gl_complete.append(station[i])
                y_gl_complete.append(elevation[i])
                color_scat_complete_gl.append(
-                    self.color_complete_gl[lcomplete.index(txt)])
+                    self.color_complete_gl[lcomplete.index(txt)]
+                )
            elif txt.strip() in self.incomplete_gl:
                annotate = self.canvas.axes.annotate(
-                    txt, (station[i], elevation[i]
-                          ), horizontalalignment='left',
-                    verticalalignment='top', annotation_clip=True, fontsize=11,
+                    txt,
+                    (station[i], elevation[i]),
+                    horizontalalignment='left',
+                    verticalalignment='top',
+                    annotation_clip=True, fontsize=11,
                    color=self.color_incomplete_gl[
                        lincomplete.index(txt)
                    ],
@@ -327,6 +336,10 @@ class PlotAC(PamhyrPlot):
            self.draw()
            return

+        line_2d = self.plot_xy.line_gl
+        self.color_complete_gl = self.get_line_gl_colors(line_2d)
+        self.color_incomplete_gl = 2 * ["#000000"]
+
        if ind is not None:
            before = ind - 1
            after = ind + 1
@@ -59,7 +59,18 @@ class PlotKPZ(PamhyrPlot):
        if self.data is None:
            return

-        if self.data.number_profiles == 0:
+        if len(self.data.profiles) == 0:
+            return
+
+        profiles_defined = any(
+            filter(
+                lambda profile: len(profile) > 0,
+                self.data.profiles
+            )
+        )
+
+        if not profiles_defined:
+            self._init = False
            return

        self.canvas.axes.set_xlabel(
@@ -71,13 +82,13 @@ class PlotKPZ(PamhyrPlot):
            color='black', fontsize=10
        )

-        kp = self.data.get_kp()
+        kp = self.data.get_kp_complete_profiles()
        z_min = self.data.get_z_min()
        z_max = self.data.get_z_max()

-        self.canvas.axes.set_xlim(
-            left=min(kp), right=max(kp)
-        )
+        # self.canvas.axes.set_xlim(
+        #     left=min(kp), right=max(kp)
+        # )

        self.line_kp_zmin_zmax = self.canvas.axes.vlines(
            x=kp,
@@ -142,7 +153,7 @@ class PlotKPZ(PamhyrPlot):
            )
            self.after_plot_selected.set_visible(False)

-        kp = self.data.get_kp()
+        kp = self.data.get_kp_complete_profiles()
        self.line_kp_zgl = []
        for z in self.data.get_guidelines_z():
            # Is incomplete guideline?
@@ -183,41 +194,47 @@ class PlotKPZ(PamhyrPlot):
            self.after_plot_selected.set_visible(False)

            if 0 <= before < self.data.number_profiles:
-                kp_i = self.data.profile(before).kp
-                z_min_i = self.data.profile(before).z_min()
-                z_max_i = self.data.profile(before).z_max()
+                profile = self.data.profile(before)
+                if len(profile) > 0:
+                    kp_i = profile.kp
+                    z_min_i = profile.z_min()
+                    z_max_i = profile.z_max()

-                self.before_plot_selected.set_data(
-                    (kp_i, kp_i),
-                    (z_min_i, z_max_i)
-                )
-                self.before_plot_selected.set_visible(True)
+                    self.before_plot_selected.set_data(
+                        (kp_i, kp_i),
+                        (z_min_i, z_max_i)
+                    )
+                    self.before_plot_selected.set_visible(True)

            if 0 <= ind < self.data.number_profiles:
-                kp_i = self.data.profile(ind).kp
-                z_min_i = self.data.profile(ind).z_min()
-                z_max_i = self.data.profile(ind).z_max()
+                profile = self.data.profile(ind)
+                if len(profile) > 0:
+                    kp_i = profile.kp
+                    z_min_i = profile.z_min()
+                    z_max_i = profile.z_max()

-                self.plot_selected.set_data(
-                    (kp_i, kp_i),
-                    (z_min_i, z_max_i)
-                )
-                self.plot_selected.set_visible(True)
+                    self.plot_selected.set_data(
+                        (kp_i, kp_i),
+                        (z_min_i, z_max_i)
+                    )
+                    self.plot_selected.set_visible(True)

            if 0 <= after < self.data.number_profiles:
-                kp_i = self.data.profile(after).kp
-                z_min_i = self.data.profile(after).z_min()
-                z_max_i = self.data.profile(after).z_max()
+                profile = self.data.profile(after)
+                if len(profile) > 0:
+                    kp_i = profile.kp
+                    z_min_i = profile.z_min()
+                    z_max_i = profile.z_max()

-                self.after_plot_selected.set_data(
-                    (kp_i, kp_i),
-                    (z_min_i, z_max_i)
-                )
-                self.after_plot_selected.set_visible(True)
+                    self.after_plot_selected.set_data(
+                        (kp_i, kp_i),
+                        (z_min_i, z_max_i)
+                    )
+                    self.after_plot_selected.set_visible(True)

            self.canvas.figure.canvas.draw_idle()
        else:
-            kp = self.data.get_kp()
+            kp = self.data.get_kp_complete_profiles()
            z_min = self.data.get_z_min()
            z_max = self.data.get_z_max()

@@ -239,5 +256,5 @@ class PlotKPZ(PamhyrPlot):
            except Exception as e:
                logger.warning(f"Failed to update graphic KPZ: {e}")

-            self.canvas.axes.autoscale_view(True, True, True)
-            self.canvas.figure.canvas.draw_idle()
+        self.canvas.axes.autoscale_view(True, True, True)
+        self.canvas.figure.canvas.draw_idle()
@@ -73,10 +73,10 @@ class PlotXY(PamhyrPlot):
        )
        self.canvas.axes.axis("equal")

-        kp = self.data.get_kp()
-        self.canvas.axes.set_xlim(
-            left=min(kp), right=max(kp)
-        )
+        kp = self.data.get_kp_complete_profiles()
+        # self.canvas.axes.set_xlim(
+        #     left=min(kp), right=max(kp)
+        # )

        # Draw line for each profile
        self.line_xy = [
@@ -149,8 +149,15 @@ class PlotXY(PamhyrPlot):
            return

        self.data.compute_guidelines()
-        x_complete = self.data.get_guidelines_x()
-        y_complete = self.data.get_guidelines_y()
+        x_complete = list(self.data.get_guidelines_x())
+        y_complete = list(self.data.get_guidelines_y())
+
+        # self.line_gl = [
+        #     self.canvas.axes.plot(
+        #         x, y,
+        #     )
+        #     for x, y in zip(x_complete, y_complete)
+        # ]

        for i in range(self.data.number_profiles):
            if i < len(self.line_xy):
Author	SHA1	Message	Date
Pierre-Antoine Rouby	a8c71e475e	Pep8: Fix.	2024-02-07 11:26:29 +01:00
Pierre-Antoine Rouby	41673145ee	Translate: Minor change.	2024-02-07 11:23:15 +01:00
Pierre-Antoine Rouby	4757c7d051	Translate: Update.	2024-02-07 11:22:22 +01:00
Pierre-Antoine Rouby	5619b98468	Solver: Run: Close checklist at solver run, resize solver window and fix empty message.	2024-02-07 10:23:02 +01:00
Pierre-Antoine Rouby	630eb98343	SL: Fix default name.	2024-02-07 10:09:18 +01:00
Pierre-Antoine Rouby	5412cb4d2d	HS: Add default name.	2024-02-07 10:06:18 +01:00
Pierre-Antoine Rouby	8f46f128ff	SL: Add default name.	2024-02-07 10:00:30 +01:00
Pierre-Antoine Rouby	8807d4d98b	Reservoir: Add default name.	2024-02-07 09:59:22 +01:00
Pierre-Antoine Rouby	7719f5270d	BC, LC: Add default name.	2024-02-07 09:57:23 +01:00
Pierre-Antoine Rouby	afb4c1b61e	Friction: Add id to friction and default name to stricklers.	2024-02-07 09:52:43 +01:00
Pierre-Antoine Rouby	28bea42b15	River: Add default reach at study creation.	2024-02-07 09:43:13 +01:00
Pierre-Antoine Rouby	955af412ea	MainWindow: Make toolbar run launch the lasest solver used and add sc on F6.	2024-02-06 15:21:51 +01:00
Pierre-Antoine Rouby	49dd3c65e1	ci: Set tag message to release message and minor change.	2024-02-05 13:38:54 +01:00
Pierre-Antoine Rouby	b2f41f88c9	ci: Minor change to fix sha256 path.	2024-02-05 13:25:19 +01:00
Pierre-Antoine Rouby	f3500c7f24	ci: Add sha256 to release artefact.	2024-02-05 11:52:56 +01:00
Pierre-Antoine Rouby	1cbdc9deff	ci: Disable PDF of user documentations.	2024-02-05 11:42:43 +01:00
Pierre-Antoine Rouby	89652cc080	ci: Add packages checksum.	2024-02-05 11:39:56 +01:00
Pierre-Antoine Rouby	fe3f151e0b	ci: Minor change.	2024-02-05 11:18:33 +01:00
Pierre-Antoine Rouby	16caae9d40	ci: Add build check.	2024-02-05 11:14:14 +01:00
Pierre-Antoine Rouby	d541becb1a	ci: Add antivirus check with clamav scan.	2024-02-02 11:23:39 +01:00
Pierre-Antoine Rouby	21e97d4e30	Solvers: Disable generic solver.	2024-02-02 10:25:41 +01:00
Pierre-Antoine Rouby	9fd9bd95f4	SolverParameters: Minor change.	2024-02-02 10:17:54 +01:00
Pierre-Antoine Rouby	fe9c348ee0	Friction: SQL: Fix type name.	2024-01-31 09:57:58 +01:00
Pierre-Antoine Rouby	0d36ba188e	Geometry: Export/Import file extention add lower case.	2024-01-31 09:37:17 +01:00
Pierre-Antoine Rouby	5a6d55c2ca	MainWindow: Minor change.	2024-01-31 09:27:21 +01:00
Pierre-Antoine Rouby	36ad9562eb	MainWindow: Fix save as function.	2024-01-31 09:23:50 +01:00
Pierre-Antoine Rouby	bf06a9fe43	Network: Set unselected edges to black.	2024-01-31 09:12:23 +01:00
Pierre-Antoine Rouby	34c9fbd77a	pamhyr: Some hot fixes...	2024-01-30 16:23:00 +01:00
Pierre-Antoine Rouby	f4ca2650e5	Some hot fix.	2024-01-30 13:04:53 +01:00
Pierre-Antoine Rouby	1d0aded01d	HS: input_pk hot fix.	2024-01-30 10:32:50 +01:00
Pierre-Antoine Rouby	3322bafdca	MainWindow: doc: Mage: Switch odt to pdf.	2024-01-29 17:23:45 +01:00
Pierre-Antoine Rouby	6a0f66c244	Geometry: Revert previous plot display fix.	2024-01-29 16:51:49 +01:00
Pierre-Antoine Rouby	40757b949d	Results: Fix axes previous line.	2024-01-29 16:37:42 +01:00
Pierre-Antoine Rouby	b6c91f63f7	doc: paper: 2023: Simhydro: Add the PDF version of paper preprint.	2024-01-29 16:14:16 +01:00
Pierre-Antoine Rouby	e36206b436	ci: Add mage documentation.	2024-01-29 15:55:15 +01:00
Pierre-Antoine Rouby	797a853b36	Solver: Mage: Fix pep8.	2024-01-29 15:46:08 +01:00
Pierre-Antoine Rouby	bdc5e35453	HS: Fix input_kp type for export.	2024-01-29 15:43:28 +01:00
Pierre-Antoine Rouby	1bd05ee1c2	Merge branch 'master' of gitlab-ssh.irstea.fr:theophile.terraz/pamhyr	2024-01-26 17:02:09 +01:00
Pierre-Antoine Rouby	dc406147df	Doc: Tuto1: Fix HS images without description.	2024-01-26 17:02:00 +01:00
Theophile Terraz	87fa63d8f9	Merge branch 'master' of gitlab-ssh.irstea.fr:theophile.terraz/pamhyr	2024-01-26 16:23:52 +01:00
Theophile Terraz	2355a14a0c	debug TD	2024-01-26 16:23:44 +01:00
Pierre-Antoine Rouby	69e94e978c	Geometry: Fix plot update at meshing.	2024-01-26 15:40:35 +01:00
Pierre-Antoine Rouby	97fafe9b9b	Geometry: Reach: Fix pep8.	2024-01-26 14:35:04 +01:00
Pierre-Antoine Rouby	312abc9501	Merge branch 'master' of gitlab-ssh.irstea.fr:theophile.terraz/pamhyr	2024-01-26 14:27:41 +01:00
Pierre-Antoine Rouby	ca8c7a23fd	MainWindow: Put results menu in model action list.	2024-01-26 14:27:08 +01:00
Pierre-Antoine Rouby	9d69d60ea8	Results: Catch some possible execption where results is empty.	2024-01-26 14:16:46 +01:00
Theophile Terraz	7ab6db184d	update tuto	2024-01-26 12:09:56 +01:00
Pierre-Antoine Rouby	e72d06bf6f	Geometry: Fix some update error.	2024-01-26 11:53:51 +01:00
Pierre-Antoine Rouby	fbf342f1ad	MainWindow: Use 'default-mage' (if exists) in case of last solver is not found.	2024-01-26 10:03:04 +01:00
Pierre-Antoine Rouby	699e174b3d	Merge branch 'master' with fix #32 .	2024-01-26 09:34:59 +01:00
Pierre-Antoine Rouby	48f6c09436	Results: Fix profile list update at reach selection.	2024-01-26 09:32:05 +01:00
Lionel Penard	bab2c33e38	Corrections to French translation	2024-01-25 08:51:35 +01:00
Pierre-Antoine Rouby	c725e15015	Solver: Mage: Fix pep8.	2024-01-24 17:15:08 +01:00
Pierre-Antoine Rouby	3bad91ec37	doc: users: Tuto: Add context pdf and '.pamhyr' files.	2024-01-24 17:12:55 +01:00
Theophile Terraz	ceaab3c2fc	Merge branch 'master' of gitlab-ssh.irstea.fr:theophile.terraz/pamhyr	2024-01-24 17:06:11 +01:00
Theophile Terraz	e183c5d1de	mend work on tuto1	2024-01-24 17:03:32 +01:00
Theophile Terraz	dc73213bee	work on tuto1	2024-01-24 16:58:54 +01:00
Theophile Terraz	2ed57fbbe0	work on tuto1	2024-01-24 16:58:30 +01:00
Pierre-Antoine Rouby	4de04d1af8	Solver: Mage: Fix comment for ST file header.	2024-01-24 16:46:03 +01:00
Pierre-Antoine Rouby	7ae64d390f	Solver: Mage: Fix read bin.	2024-01-24 16:16:13 +01:00
Pierre-Antoine Rouby	f56d87f648	Meshing: Mage: Fix profiles purge.	2024-01-24 15:58:05 +01:00
Pierre-Antoine Rouby	6c65d84d5e	Checker: Geometry: Set minimal profiles number to 2.	2024-01-24 15:47:27 +01:00
Pierre-Antoine Rouby	490b5466da	Merge branch 'master' of gitlab-ssh.irstea.fr:theophile.terraz/pamhyr	2024-01-24 15:27:02 +01:00
Theophile Terraz	3805cc9932	Merge branch 'master' of gitlab-ssh.irstea.fr:theophile.terraz/pamhyr	2024-01-24 15:26:35 +01:00
Theophile Terraz	b56172328e	debug	2024-01-24 15:26:33 +01:00
Pierre-Antoine Rouby	e4a012b5a3	Meshing: Mage: Fix mailleurTT.	2024-01-24 15:26:18 +01:00
Pierre-Antoine Rouby	3dfdc308e3	HS: Fix HS KP is missing at display update.	2024-01-24 15:12:39 +01:00
Pierre-Antoine Rouby	14a2abaebd	Meshing: Mage: Fix pep8.	2024-01-24 15:05:28 +01:00
Pierre-Antoine Rouby	d0afd0ed74	Geometry: Fix division by 0 for incline.	2024-01-24 15:00:31 +01:00
Pierre-Antoine Rouby	473aac4500	Meshing: Define meshing with MailleurTT.	2024-01-24 14:51:19 +01:00
Pierre-Antoine Rouby	ad59afc4f5	MainWindow: Fix pep8.	2024-01-24 11:46:30 +01:00
Pierre-Antoine Rouby	3be2973032	ci: Update mage version.	2024-01-24 11:45:07 +01:00
Pierre-Antoine Rouby	b5a3ee7568	doc: Delete user documentation and use gitlab wiki instead.	2024-01-24 11:41:30 +01:00
Pierre-Antoine Rouby	aad7d75fa6	ci: Minor fix.	2024-01-24 11:22:37 +01:00
Pierre-Antoine Rouby	70f1581a3b	Packages: Add TP charriage.	2024-01-24 11:12:31 +01:00
Pierre-Antoine Rouby	641003ded4	Doc: Users: TP: Add TP charriage.	2024-01-24 11:08:40 +01:00
Pierre-Antoine Rouby	28526d8f91	Solver: Mage: Fix pep8.	2024-01-24 10:46:07 +01:00
Pierre-Antoine Rouby	416a807e5d	Merge branch 'master' of gitlab-ssh.irstea.fr:theophile.terraz/pamhyr	2024-01-24 10:44:58 +01:00
Lionel Penard	e723b56e18	Typos tuto1 and French translation	2024-01-24 10:43:04 +01:00
Pierre-Antoine Rouby	67b76a3113	Merge branch 'master' of gitlab-ssh.irstea.fr:theophile.terraz/pamhyr	2024-01-24 10:41:36 +01:00
Pierre-Antoine Rouby	1169f3cc94	Geometry: ui: Minor change.	2024-01-24 10:26:22 +01:00
Pierre-Antoine Rouby	82ab7b5429	HS: Basic: Display set type question only if previous type is not ND.	2024-01-24 10:22:58 +01:00
Lionel Penard	9b3a281e35	Typos tuto1 and French translation	2024-01-24 09:50:58 +01:00
Theophile Terraz	00f0e39eda	Merge branch 'master' of gitlab-ssh.irstea.fr:theophile.terraz/pamhyr	2024-01-23 17:39:20 +01:00
Theophile Terraz	1e7e5b0328	debug mesh	2024-01-23 17:39:10 +01:00
Lionel Penard	8afd5023e9	merge french tuto1	2024-01-23 17:07:28 +01:00
Lionel Penard	100003ad90	Update english and create french version of tuto1	2024-01-23 16:57:26 +01:00
Pierre-Antoine Rouby	7fd6e4469b	HS: Basic: Add CheckValve hydraulic structure and VAR export.	2024-01-23 16:56:24 +01:00
Pierre-Antoine Rouby	793289dd80	Tuto: Add ci tuto building.	2024-01-23 16:08:35 +01:00
Theophile Terraz	ab10970025	add png to tuto1	2024-01-23 15:24:05 +01:00
Pierre-Antoine Rouby	3c9eccdfab	Solver: Mage: Fix <list>.node error.	2024-01-23 11:30:34 +01:00
Pierre-Antoine Rouby	6c4636917a	README: Update install from source.	2024-01-23 10:31:31 +01:00
Pierre-Antoine Rouby	56b170d767	README: Minor change.	2024-01-23 09:35:03 +01:00
Pierre-Antoine Rouby	318f6e9965	Geometry: Fix pep8.	2024-01-22 16:04:32 +01:00
Pierre-Antoine Rouby	63f7095508	Geometry: Activate export to file.	2024-01-22 15:28:42 +01:00
Pierre-Antoine Rouby	1965782348	Traduction: Update.	2024-01-22 14:44:56 +01:00
Pierre-Antoine Rouby	a54bf30c3d	Traduction: Update.	2024-01-22 11:58:33 +01:00
Pierre-Antoine Rouby	1e245004c9	Translation: Solver parameters: Add translate for mage solver parameters.	2024-01-22 11:03:49 +01:00
Pierre-Antoine Rouby	03c3c37435	Solver, Meshing: Mage: Add some exit condition.	2024-01-22 10:53:00 +01:00
Pierre-Antoine Rouby	19ad9c4d1a	Config: Minor change.	2024-01-19 16:16:26 +01:00
Pierre-Antoine Rouby	c183e5016c	Pamhyr: Fix tests and pep8.	2024-01-19 15:54:28 +01:00
Pierre-Antoine Rouby	4790b9c071	River: Fix node and edges artefact deletions at data saves.	2024-01-19 15:49:54 +01:00
Pierre-Antoine Rouby	770bb5f96f	Config: Fix version updater.	2024-01-19 14:22:38 +01:00
Pierre-Antoine Rouby	6319ac9310	Geometry: Handle exception for meshing tool.	2024-01-19 11:51:48 +01:00
Pierre-Antoine Rouby	b6f0c6f49a	tests: Add a mage meshingtool test.	2024-01-19 11:20:53 +01:00
Pierre-Antoine Rouby	486ff5c239	Mainwindow: Minor change.	2024-01-19 10:35:36 +01:00
Pierre-Antoine Rouby	73475220e9	Mainwindow: Add action to open results from a file.	2024-01-19 10:08:30 +01:00
Pierre-Antoine Rouby	852a3f58ff	Checker: Mage: Add guidelines checker.	2024-01-17 15:26:21 +01:00
Pierre-Antoine Rouby	8b8aff7df1	Frictions: Fix none assiciated stricklers at save/load.	2024-01-17 14:42:20 +01:00
Pierre-Antoine Rouby	e86111bd7a	Solver: Mage: Fix empty HS error and space in input param.	2024-01-17 11:23:49 +01:00
Pierre-Antoine Rouby	870cba5005	Geometry: Fix width_approximation when rg and rd is missing.	2024-01-17 11:02:44 +01:00
Pierre-Antoine Rouby	c5df959210	doc: wiki: Add annotation.	2024-01-16 15:43:15 +01:00
Pierre-Antoine Rouby	631e52b486	doc: wiki: Results add image.	2024-01-16 15:33:52 +01:00
Pierre-Antoine Rouby	5e32082fcf	doc: wiki: Running solver images.	2024-01-16 14:57:17 +01:00
Pierre-Antoine Rouby	8834afa4f3	Geometry: Allow to copy point with floating point string format ','.	2024-01-16 14:20:48 +01:00
Pierre-Antoine Rouby	0d88b954d8	pep8: Minor change.	2024-01-16 14:12:30 +01:00
Pierre-Antoine Rouby	46602227af	Results: Fix play button image file path.	2024-01-16 14:10:56 +01:00
Pierre-Antoine Rouby	99fe5e8f74	Results: Fix results reading before solver running... (again)	2024-01-16 14:05:29 +01:00
Pierre-Antoine Rouby	9e9f56ee65	HS: Resize window and add screenshot for wiki.	2024-01-16 11:06:57 +01:00
Pierre-Antoine Rouby	cf53985fed	Geometry: Remove some warning when profile not fully defined.	2024-01-16 09:05:27 +01:00
Pierre-Antoine Rouby	0ace259d2d	Meshing: Mage: Fix libbief extention under windows system.	2024-01-15 17:08:46 +01:00
Pierre-Antoine Rouby	f73b9b06c0	HS: Basic: Translate minor change.	2024-01-15 16:37:29 +01:00
Pierre-Antoine Rouby	906ed801c7	translate: Update HS and minor change.	2024-01-15 16:35:19 +01:00
Pierre-Antoine Rouby	975f2027ed	HS: Basic: Rename all HS to english and add translation.	2024-01-15 15:15:05 +01:00
Pierre-Antoine Rouby	22f3823699	pep8: Minor change.	2024-01-15 14:09:00 +01:00
Pierre-Antoine Rouby	c81dfb3ccc	windows: Fix posix color on windows terminal.	2024-01-15 14:04:30 +01:00
Pierre-Antoine Rouby	2c8c2699ef	Geometry: Fix point paste command.	2024-01-15 13:56:58 +01:00
Pierre-Antoine Rouby	7fd570c5a7	Network: Add tests and minor change.	2024-01-12 15:01:23 +01:00
Pierre-Antoine Rouby	76ab3114f0	doc: wiki: Add numerical params window image.	2024-01-10 15:30:42 +01:00
Pierre-Antoine Rouby	76975a85e0	doc: wiki: Add reservoir images.	2024-01-10 15:09:43 +01:00
Pierre-Antoine Rouby	7b9c725f04	doc: wiki: Add sediment images.	2024-01-10 10:48:33 +01:00
Pierre-Antoine Rouby	6fea7baea2	Geometry: Minor change.	2024-01-10 10:15:30 +01:00
Pierre-Antoine Rouby	9c2b2033ec	doc: wiki: Add IC window images.	2024-01-10 09:41:16 +01:00
Pierre-Antoine Rouby	f67b7c6f60	doc: wiki: Add BC images.	2024-01-09 16:41:04 +01:00
Pierre-Antoine Rouby	fb0f1ad866	doc: wiki: Add frictions windows images.	2024-01-09 16:01:05 +01:00
Pierre-Antoine Rouby	2b1fa93ebe	doc: wiki: Add geometry window.	2024-01-09 15:09:15 +01:00
Pierre-Antoine Rouby	e3140763ba	doc: wiki: Update network image.	2024-01-09 14:50:44 +01:00
Pierre-Antoine Rouby	e60b388930	doc: wiki: Add network window image.	2024-01-09 14:20:57 +01:00
Pierre-Antoine Rouby	f4914934f2	doc: wiki: Add new study window image.	2024-01-09 14:03:40 +01:00
Pierre-Antoine Rouby	7115632d30	ci: Fix images copy command.	2024-01-09 11:59:14 +01:00
Pierre-Antoine Rouby	52112a5413	doc: wiki: Add images for the wiki documentation.	2024-01-09 11:44:41 +01:00
Pierre-Antoine Rouby	07798bbf46	Config: Disable meshing tools tab and add some self documentation for solver command line.	2024-01-09 10:53:49 +01:00
Pierre-Antoine Rouby	134c66d51c	Geometry: Fix pep8.	2024-01-09 10:20:34 +01:00
Pierre-Antoine Rouby	84cf693528	HS: Add HS name on BHS edit window title.	2024-01-09 09:20:08 +01:00
Pierre-Antoine Rouby	7ef2df8535	Geometry: Window update minor change.	2024-01-08 17:27:12 +01:00
Pierre-Antoine Rouby	4d95e42d20	Geometry: Make import button an undo command.	2024-01-08 17:11:10 +01:00
Pierre-Antoine Rouby	30702cb118	Geometry: Fixed #29 with a hacky solution.	2024-01-08 16:30:56 +01:00
Pierre-Antoine Rouby	e930bcaa91	Package: Add windows 'libbief.dll'.	2024-01-08 15:46:47 +01:00
Pierre-Antoine Rouby	1e2432e298	Package: Update mage version.	2024-01-08 15:35:58 +01:00
Pierre-Antoine Rouby	1243b2dc88	Meshing: Mage: Fix pep8.	2024-01-08 15:27:23 +01:00
Pierre-Antoine Rouby	f2b97b68bd	Merge branch 'master' of gitlab-ssh.irstea.fr:theophile.terraz/pamhyr	2024-01-08 15:20:06 +01:00
Pierre-Antoine Rouby	2149fa0dcb	IC: Change generate button text.	2024-01-08 15:15:50 +01:00
Pierre-Antoine Rouby	6293c6206c	IC: Generator dialog text and size.	2024-01-08 15:13:24 +01:00
Theophile Terraz	f451731877	add point number in profiles table for geometry	2023-12-21 15:57:36 +01:00
Theophile Terraz	d74c78eff5	get GL order for meshing	2023-12-21 15:56:59 +01:00
Theophile Terraz	af347349e1	add purge after interpolation	2023-12-21 14:56:56 +01:00
Theophile Terraz	2f47b190ac	improve interpolation	2023-12-20 17:56:43 +01:00
Pierre-Antoine Rouby	655982e908	Geometry: Make meshing method to undo command.	2023-12-20 14:36:41 +01:00
Theophile Terraz	82eba020ac	Merge branch 'master' of gitlab-ssh.irstea.fr:theophile.terraz/pamhyr	2023-12-20 14:11:26 +01:00
Pierre-Antoine Rouby	eb65ce4c1b	Meshing: Mage: Fix so file path for packages.	2023-12-20 12:13:28 +01:00
Pierre-Antoine Rouby	691ec4f3bd	pep8: Minor fix.	2023-12-20 12:05:37 +01:00
Pierre-Antoine Rouby	c1069adc2f	packages: Add libbief.	2023-12-20 11:59:04 +01:00
Pierre-Antoine Rouby	097b5eb7fc	Geometry: Add meshing action with mage internal meshing functions.	2023-12-20 11:36:46 +01:00
Pierre-Antoine Rouby	e965e2b4c1	Script: Meshing: Minor change.	2023-12-20 10:53:48 +01:00